Wall clock time and date at job start Tue Mar 31 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 119.99731 * 2 1 4 4 N 1.34779 * 120.00293 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.05467 * 359.62430 * 4 2 1 6 6 C 1.53754 * 87.88627 * 152.96543 * 5 4 2 7 7 C 1.50701 * 114.26449 * 139.79044 * 6 5 4 8 8 O 1.21273 * 120.00054 * 266.47352 * 7 6 5 9 9 N 1.34780 * 119.99960 * 86.47652 * 7 6 5 10 10 C 1.39464 * 120.00131 * 175.30581 * 9 7 6 11 11 C 1.38595 * 119.58077 * 186.38069 * 10 9 7 12 12 C 1.40810 * 118.79567 * 180.02562 * 11 10 9 13 13 C 1.41545 * 120.99490 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99873 * 201.18766 * 13 12 11 15 15 C 1.40034 * 119.99981 * 21.19666 * 13 12 11 16 16 N 1.30740 * 119.99992 * 12.73434 * 15 13 12 17 17 Si 1.86798 * 119.99824 * 192.73792 * 15 13 12 18 18 H 1.48494 * 109.47377 * 59.99583 * 17 15 13 19 19 H 1.48499 * 109.47094 * 179.97438 * 17 15 13 20 20 H 1.48510 * 109.47111 * 299.99642 * 17 15 13 21 21 C 1.41167 * 118.00811 * 0.02562 * 12 11 10 22 22 C 1.37590 * 119.01443 * 359.97438 * 21 12 11 23 23 N 1.32075 * 121.10779 * 359.71993 * 22 21 12 24 24 C 1.47061 * 136.06189 * 180.02562 * 4 2 1 25 25 H 1.08997 * 109.46798 * 90.00364 * 1 2 3 26 26 H 1.09001 * 109.47031 * 330.00275 * 1 2 3 27 27 H 1.08999 * 109.47180 * 210.00043 * 1 2 3 28 28 H 1.08997 * 113.46727 * 267.69855 * 5 4 2 29 29 H 1.09000 * 113.46788 * 38.14085 * 5 4 2 30 30 H 1.08997 * 114.39954 * 272.67851 * 6 5 4 31 31 H 0.96998 * 119.99608 * 355.31577 * 9 7 6 32 32 H 1.08002 * 120.60441 * 0.02816 * 11 10 9 33 33 H 0.96998 * 119.99860 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.49532 * 179.97438 * 21 12 11 35 35 H 1.08002 * 119.44480 * 180.02562 * 22 21 12 36 36 H 1.09007 * 113.46900 * 321.86612 * 24 4 2 37 37 H 1.09003 * 113.46852 * 92.29715 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8266 -2.5945 0.0055 6 6 3.1646 -2.8712 -0.6997 7 6 3.8800 -4.1036 -0.2091 8 8 4.7143 -4.0123 0.6663 9 7 3.5926 -5.3071 -0.7433 10 6 4.3221 -6.4323 -0.3600 11 6 4.1107 -7.6385 -1.0091 12 6 4.8559 -8.7641 -0.6084 13 6 4.6771 -10.0187 -1.2389 14 1 4.9736 -10.9250 -0.7317 15 6 4.1160 -10.0848 -2.5202 16 7 3.9873 -8.9973 -3.2344 17 14 3.5513 -11.7268 -3.2088 18 1 2.5018 -12.2987 -2.3276 19 1 2.9977 -11.5277 -4.5723 20 1 4.7052 -12.6595 -3.2739 21 6 5.7858 -8.6040 0.4416 22 6 5.9261 -7.3662 1.0258 23 7 5.2118 -6.3335 0.6164 24 6 3.5942 -1.5740 -0.0002 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.7667 -3.0226 1.0061 29 1 0.9553 -2.8281 -0.6064 30 1 3.1237 -2.8008 -1.7866 31 1 2.8785 -5.3907 -1.3944 32 1 3.3876 -7.7138 -1.8078 33 1 3.5990 -9.0432 -4.1220 34 1 6.3783 -9.4406 0.7813 35 1 6.6358 -7.2358 1.8294 36 1 4.2291 -0.9379 -0.6170 37 1 3.9999 -1.7333 0.9989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530463181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:06 Heat of formation + Delta-G solvation = -14.519194 kcal Electronic energy + Delta-G solvation = -21879.959076 eV Core-core repulsion = 18429.944651 eV Total energy + Delta-G solvation = -3450.014425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00082 -40.75853 -39.61120 -38.40151 -36.11926 -35.46905 -32.48726 -32.23161 -30.68852 -29.35881 -27.90508 -27.00402 -25.23508 -23.79558 -22.72256 -21.09781 -20.03684 -19.45218 -18.83916 -17.97451 -17.58244 -17.07117 -16.81313 -16.46487 -16.12876 -16.00128 -15.63490 -15.37633 -14.88500 -14.37941 -14.31431 -14.15706 -13.93763 -13.60403 -13.42851 -13.25235 -13.12515 -12.95541 -12.84870 -12.66213 -12.04010 -11.92693 -11.83981 -11.48551 -11.22125 -11.15490 -10.87515 -9.93266 -9.90516 -9.57763 -8.83026 -8.57544 -6.55699 0.75394 1.03499 1.43950 1.49332 1.54124 1.57849 1.66620 1.81094 2.21682 2.25373 2.83291 3.12580 3.46371 3.66467 3.79133 3.88032 4.10436 4.27403 4.31520 4.44250 4.48919 4.57411 4.64430 4.70459 4.78126 4.89296 4.95137 4.98892 5.07347 5.13854 5.28718 5.51881 5.66751 5.95629 6.17920 6.49595 6.60874 6.65081 6.82119 6.86187 7.01332 7.31101 7.87067 8.27866 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025436 B = 0.003296 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.524583 B = 8492.326673 C = 9335.473162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.532 3.468 3 O -0.603 6.603 4 N -0.648 5.648 5 C 0.129 3.871 6 C -0.135 4.135 7 C 0.513 3.487 8 O -0.523 6.523 9 N -0.644 5.644 10 C 0.331 3.669 11 C -0.261 4.261 12 C 0.108 3.892 13 C -0.480 4.480 14 H 0.081 0.919 15 C 0.039 3.961 16 N -0.809 5.809 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.264 1.264 21 C -0.301 4.301 22 C 0.112 3.888 23 N -0.580 5.580 24 C 0.115 3.885 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.426 0.574 32 H 0.139 0.861 33 H 0.293 0.707 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.079 0.921 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 7.158 -1.336 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.326 3.674 3 O -0.485 6.485 4 N -0.383 5.383 5 C 0.006 3.994 6 C -0.157 4.157 7 C 0.299 3.701 8 O -0.396 6.396 9 N -0.291 5.291 10 C 0.105 3.895 11 C -0.287 4.287 12 C 0.100 3.900 13 C -0.511 4.511 14 H 0.099 0.901 15 C -0.178 4.178 16 N -0.435 5.435 17 Si 0.809 3.191 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.188 1.188 21 C -0.324 4.324 22 C -0.042 4.042 23 N -0.300 5.300 24 C -0.009 4.009 25 H 0.135 0.865 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.265 0.735 32 H 0.156 0.844 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.164 0.836 36 H 0.098 0.902 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.564 9.007 -0.541 13.893 hybrid contribution 0.060 -1.573 -0.824 1.777 sum -10.504 7.434 -1.365 12.940 Atomic orbital electron populations 1.21869 0.86829 1.06189 1.06606 1.21378 0.91993 0.80344 0.73728 1.90710 1.72302 1.32238 1.53215 1.49760 1.09276 1.06479 1.72798 1.23094 0.96996 0.77486 1.01786 1.23160 0.98161 0.90483 1.03915 1.20865 0.83028 0.84390 0.81820 1.90788 1.33157 1.85765 1.29859 1.43401 1.36049 1.05435 1.44208 1.18473 0.92149 0.86576 0.92281 1.21809 1.07745 0.92049 1.07077 1.18027 0.88195 0.93774 0.89998 1.19877 1.36751 0.93499 1.00924 0.90052 1.26793 0.92394 1.02279 0.96344 1.69740 1.31764 1.31369 1.10587 0.85151 0.79339 0.76843 0.77798 1.18384 1.18847 1.18827 1.22065 1.05891 0.98622 1.05868 1.22157 0.96257 0.88215 0.97574 1.67325 1.12186 1.33148 1.17331 1.22797 0.84881 0.91994 1.01217 0.86543 0.88473 0.87803 0.88972 0.84750 0.82531 0.73516 0.84371 0.89592 0.86945 0.83617 0.90211 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.19 71.24 0.73 -1.02 16 2 C 0.53 12.03 8.19 87.66 0.72 12.75 16 3 O -0.60 -19.98 17.88 -3.03 -0.05 -20.03 16 4 N -0.65 -13.37 3.69 -857.86 -3.16 -16.54 16 5 C 0.13 1.91 7.83 83.26 0.65 2.56 16 6 C -0.14 -2.75 4.51 -11.11 -0.05 -2.80 16 7 C 0.51 16.54 7.36 87.66 0.65 17.19 16 8 O -0.52 -22.23 14.21 -3.01 -0.04 -22.28 16 9 N -0.64 -21.96 5.39 -308.67 -1.66 -23.62 16 10 C 0.33 15.18 7.41 132.75 0.98 16.16 16 11 C -0.26 -12.73 8.66 22.98 0.20 -12.53 16 12 C 0.11 5.59 5.65 -21.12 -0.12 5.47 16 13 C -0.48 -24.00 9.15 23.52 0.22 -23.78 16 14 H 0.08 3.91 7.88 -2.91 -0.02 3.88 16 15 C 0.04 1.77 5.30 85.29 0.45 2.22 16 16 N -0.81 -37.34 10.53 21.84 0.23 -37.11 16 17 Si 0.99 34.22 29.58 68.60 2.03 36.25 16 18 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 19 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 21 C -0.30 -14.58 9.90 22.84 0.23 -14.35 16 22 C 0.11 5.26 11.15 84.50 0.94 6.20 16 23 N -0.58 -28.66 7.86 -193.54 -1.52 -30.18 16 24 C 0.11 2.78 7.96 83.18 0.66 3.44 16 25 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.10 0.69 7.93 -2.39 -0.02 0.67 16 28 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 29 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.16 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.43 10.99 8.70 -92.71 -0.81 10.19 16 32 H 0.14 6.60 5.83 -2.91 -0.02 6.58 16 33 H 0.29 12.01 8.29 -92.71 -0.77 11.24 16 34 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 35 H 0.15 5.95 8.06 -2.91 -0.02 5.93 16 36 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.08 2.35 7.46 -2.39 -0.02 2.33 16 Total: -1.00 -74.36 324.71 2.37 -71.99 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.31 Total: 30.01 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.25 Total: 11.51 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -6.12 Total: -107.45 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.10 Total: -42.31 kcal Atomic # 14 Polarization: 34.22 SS G_CDS: 2.03 Total: 36.25 kcal Total: -74.36 2.37 -71.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530463181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.468 kcal (2) G-P(sol) polarization free energy of solvation -74.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds