Wall clock time and date at job start Tue Mar 31 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47136 * 300.00165 * 3 2 1 6 6 H 1.48498 * 109.46917 * 59.99798 * 3 2 1 7 7 C 1.40030 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00256 * 189.82609 * 7 2 1 9 9 C 1.41546 * 120.00191 * 9.83744 * 7 2 1 10 10 C 1.41177 * 120.99454 * 26.22718 * 9 7 2 11 11 C 1.37593 * 119.01450 * 180.02562 * 10 9 7 12 12 N 1.32079 * 121.11109 * 359.97438 * 11 10 9 13 13 C 1.32473 * 122.23080 * 0.02562 * 12 11 10 14 14 N 1.39466 * 119.57940 * 179.72504 * 13 12 11 15 15 C 1.34774 * 120.00239 * 354.93391 * 14 13 12 16 16 O 1.21274 * 119.99828 * 354.90815 * 15 14 13 17 17 C 1.50700 * 119.99955 * 174.90980 * 15 14 13 18 18 H 1.08999 * 109.60509 * 60.00085 * 17 15 14 19 19 C 1.53347 * 109.60135 * 180.32355 * 17 15 14 20 20 C 1.53032 * 108.44108 * 187.14123 * 19 17 15 21 21 C 1.50178 * 109.99782 * 311.34003 * 20 19 17 22 22 O 1.21282 * 118.24103 * 197.44132 * 21 20 19 23 23 N 1.33348 * 123.51238 * 17.46996 * 21 20 19 24 24 C 1.45757 * 124.10615 * 357.79466 * 23 21 20 25 25 C 1.38602 * 120.83946 * 0.02562 * 13 12 11 26 26 H 0.96999 * 120.00250 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.49633 * 0.05078 * 10 9 7 28 28 H 1.07994 * 119.44402 * 180.02562 * 11 10 9 29 29 H 0.97009 * 119.99744 * 174.93199 * 14 13 12 30 30 H 1.08997 * 109.67848 * 307.02237 * 19 17 15 31 31 H 1.09005 * 109.67516 * 67.55156 * 19 17 15 32 32 H 1.09002 * 109.44134 * 191.12164 * 20 19 17 33 33 H 1.08998 * 109.25155 * 71.43993 * 20 19 17 34 34 H 0.97000 * 117.95250 * 177.77215 * 23 21 20 35 35 H 1.08995 * 109.30052 * 258.74574 * 24 23 21 36 36 H 1.08997 * 109.30040 * 139.36821 * 24 23 21 37 37 H 1.07999 * 120.59994 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0756 -1.2195 0.1602 9 6 1.3154 -2.4296 -0.2083 10 6 0.1059 -2.4625 -0.9356 11 6 -0.5332 -3.6679 -1.1137 12 7 -0.0333 -4.7852 -0.6176 13 6 1.0977 -4.8083 0.0717 14 7 1.5723 -6.0191 0.5756 15 6 0.8320 -7.1382 0.4490 16 8 -0.2849 -7.0766 -0.0194 17 6 1.3922 -8.4660 0.8895 18 1 1.6298 -8.4282 1.9526 19 6 0.3603 -9.5707 0.6320 20 6 0.8795 -10.8714 1.2487 21 6 2.3041 -11.1036 0.8341 22 8 2.7635 -12.2192 0.9583 23 7 3.0913 -10.1487 0.3373 24 6 2.6588 -8.7787 0.0916 25 6 1.8122 -3.6435 0.3039 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3115 -1.5550 -1.3464 28 1 -1.4587 -3.7011 -1.6693 29 1 2.4353 -6.0557 1.0172 30 1 -0.5905 -9.2988 1.0903 31 1 0.2258 -9.7042 -0.4415 32 1 0.2636 -11.7046 0.9102 33 1 0.8255 -10.8008 2.3350 34 1 4.0093 -10.3803 0.1264 35 1 2.4557 -8.6501 -0.9715 36 1 3.4510 -8.0919 0.3895 37 1 2.7336 -3.6667 0.8667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531924305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:30 Heat of formation + Delta-G solvation = -43.159929 kcal Electronic energy + Delta-G solvation = -22051.020405 eV Core-core repulsion = 18599.764025 eV Total energy + Delta-G solvation = -3451.256381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.75998 -39.56508 -38.02742 -36.26701 -34.63266 -33.68137 -33.17122 -30.74663 -30.45970 -28.32576 -26.07150 -24.96479 -23.72768 -21.94986 -21.71085 -20.12219 -19.15325 -18.06244 -17.67453 -16.66518 -16.31796 -15.90551 -15.55490 -15.23546 -14.94250 -14.33609 -14.28104 -14.11726 -13.86927 -13.77916 -13.48725 -13.07948 -12.48537 -12.39069 -12.03147 -11.93155 -11.52697 -11.42126 -11.27655 -11.21419 -11.04885 -10.43605 -10.08053 -9.96192 -9.85116 -9.51677 -9.47686 -9.36345 -8.09424 -7.84000 -7.13088 -6.82461 -4.69913 2.39987 2.43381 2.68186 2.96879 2.98672 3.03005 3.09813 3.34946 3.37285 3.80638 4.31513 4.38101 4.46598 4.54508 4.63543 5.00899 5.07423 5.09572 5.20732 5.44721 5.56110 5.60518 5.80548 5.92563 5.99560 6.46686 6.49191 6.50014 6.70117 6.84610 7.04218 7.07034 7.31602 7.41709 7.66659 7.82650 7.96872 8.09356 8.38611 8.56450 8.67980 8.73461 9.59327 10.03668 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.003066 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.824238 B = 9129.938394 C = 9634.980298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.220 4.220 11 C 0.102 3.898 12 N -0.554 5.554 13 C 0.345 3.655 14 N -0.659 5.659 15 C 0.507 3.493 16 O -0.470 6.470 17 C -0.125 4.125 18 H 0.105 0.895 19 C -0.104 4.104 20 C -0.135 4.135 21 C 0.520 3.480 22 O -0.562 6.562 23 N -0.717 5.717 24 C 0.119 3.881 25 C -0.300 4.300 26 H 0.282 0.718 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.406 0.594 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -10.372 2.040 11.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.243 4.243 11 C -0.049 4.049 12 N -0.273 5.273 13 C 0.117 3.883 14 N -0.306 5.306 15 C 0.290 3.710 16 O -0.338 6.338 17 C -0.148 4.148 18 H 0.123 0.877 19 C -0.142 4.142 20 C -0.175 4.175 21 C 0.308 3.692 22 O -0.441 6.441 23 N -0.369 5.369 24 C -0.006 4.006 25 C -0.326 4.326 26 H 0.094 0.906 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.240 0.760 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.237 0.763 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.037 -11.538 1.662 12.046 hybrid contribution 1.651 1.747 0.407 2.438 sum 4.688 -9.791 2.069 11.051 Atomic orbital electron populations 1.69749 1.07597 1.29371 1.34849 1.25971 0.94881 1.01558 0.91996 0.86140 0.80735 0.80464 0.78696 1.18351 1.19597 1.19833 1.19607 0.95821 0.89992 1.43141 0.90084 1.17612 0.90895 0.91531 0.86418 1.22348 0.99526 0.98140 1.04284 1.21915 0.97927 0.88020 0.97049 1.67172 1.12843 1.30443 1.16834 1.17986 0.92228 0.83547 0.94503 1.43479 1.22004 1.07008 1.58082 1.20193 0.86316 0.84528 0.79977 1.90812 1.17697 1.85454 1.39870 1.21690 0.96444 0.94443 1.02174 0.87715 1.21488 0.98624 0.91273 1.02801 1.21685 0.92474 1.00147 1.03200 1.20276 0.88806 0.83929 0.76228 1.90758 1.75194 1.22811 1.55350 1.45431 1.15413 1.10597 1.65488 1.21326 0.96099 0.82643 1.00530 1.21226 1.05064 0.92503 1.13848 0.90638 0.85013 0.85841 0.75965 0.89118 0.90273 0.87684 0.88021 0.76320 0.90621 0.89719 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.33 10.70 55.55 0.59 -18.74 16 2 C 0.07 1.76 5.31 -17.35 -0.09 1.67 16 3 Si 0.92 17.51 29.57 -169.99 -5.03 12.48 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.45 -11.26 9.13 -37.65 -0.34 -11.60 16 8 H 0.08 1.91 7.87 -52.49 -0.41 1.49 16 9 C 0.14 3.63 5.60 -106.55 -0.60 3.03 16 10 C -0.22 -5.51 8.77 -38.70 -0.34 -5.85 16 11 C 0.10 2.44 11.15 -17.68 -0.20 2.24 16 12 N -0.55 -13.37 7.88 -12.52 -0.10 -13.46 16 13 C 0.34 7.52 7.41 -154.70 -1.15 6.37 16 14 N -0.66 -10.62 5.28 -11.49 -0.06 -10.68 16 15 C 0.51 7.86 7.09 -10.99 -0.08 7.78 16 16 O -0.47 -9.52 14.18 5.56 0.08 -9.44 16 17 C -0.13 -1.27 2.59 -91.63 -0.24 -1.50 16 18 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 19 C -0.10 -1.04 4.72 -26.53 -0.13 -1.16 16 20 C -0.14 -1.20 6.03 -28.12 -0.17 -1.37 16 21 C 0.52 5.76 7.72 -11.87 -0.09 5.67 16 22 O -0.56 -8.41 17.78 5.56 0.10 -8.32 16 23 N -0.72 -6.35 5.45 -61.39 -0.33 -6.68 16 24 C 0.12 1.00 6.37 -4.48 -0.03 0.97 16 25 C -0.30 -6.80 9.73 -38.48 -0.37 -7.17 16 26 H 0.28 6.25 8.29 -40.82 -0.34 5.92 16 27 H 0.13 3.37 6.11 -52.49 -0.32 3.05 16 28 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 29 H 0.41 4.82 8.53 -40.82 -0.35 4.47 16 30 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 31 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.40 3.09 8.80 -40.82 -0.36 2.73 16 35 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 36 H 0.08 0.54 7.99 -51.93 -0.42 0.12 16 37 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 316.04 15.07 4.76 4.76 Total: -1.00 -32.70 316.04 -8.16 -40.86 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.36 Total: 10.15 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.82 Total: -0.93 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.10 Total: -49.57 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.18 Total: -17.76 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.70 -8.16 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.301 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds