Wall clock time and date at job start Tue Mar 31 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86802 * 119.99722 * 2 1 4 4 H 1.48502 * 109.46786 * 269.99863 * 3 2 1 5 5 H 1.48492 * 109.47157 * 29.99890 * 3 2 1 6 6 H 1.48496 * 109.47080 * 150.00248 * 3 2 1 7 7 C 1.40032 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.41548 * 120.00052 * 359.91484 * 7 2 1 10 10 C 1.41173 * 120.99454 * 327.50385 * 9 7 2 11 11 C 1.37588 * 119.01140 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.10994 * 359.97438 * 11 10 9 13 13 C 1.32470 * 122.23235 * 0.02562 * 12 11 10 14 14 N 1.39470 * 119.57742 * 180.27775 * 13 12 11 15 15 C 1.34776 * 120.00154 * 353.87994 * 14 13 12 16 16 O 1.21273 * 120.00311 * 355.04886 * 15 14 13 17 17 C 1.50697 * 119.99748 * 175.04918 * 15 14 13 18 18 H 1.08999 * 109.60533 * 300.32411 * 17 15 14 19 19 C 1.53343 * 109.60542 * 180.02562 * 17 15 14 20 20 C 1.53068 * 108.43103 * 172.71481 * 19 17 15 21 21 C 1.50178 * 109.89183 * 48.89526 * 20 19 17 22 22 O 1.21278 * 118.24473 * 162.40028 * 21 20 19 23 23 N 1.33355 * 123.50562 * 342.42197 * 21 20 19 24 24 C 1.45748 * 124.10819 * 2.22422 * 23 21 20 25 25 C 1.38596 * 120.83933 * 0.02562 * 13 12 11 26 26 H 0.96996 * 120.00000 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.49677 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.44530 * 179.97438 * 11 10 9 29 29 H 0.96998 * 119.99746 * 173.88024 * 14 13 12 30 30 H 1.09008 * 109.67427 * 292.44773 * 19 17 15 31 31 H 1.08998 * 109.67503 * 52.97604 * 19 17 15 32 32 H 1.08996 * 109.40080 * 169.03206 * 20 19 17 33 33 H 1.09007 * 109.39422 * 288.85859 * 20 19 17 34 34 H 0.97000 * 117.94078 * 182.21711 * 23 21 20 35 35 H 1.09005 * 109.29916 * 220.61174 * 24 23 21 36 36 H 1.08997 * 109.30123 * 101.23872 * 24 23 21 37 37 H 1.08004 * 120.60356 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.2999 -2.4386 0.0029 10 6 0.0533 -2.5571 0.6548 11 6 -0.5997 -3.7679 0.6311 12 7 -0.0796 -4.8117 0.0109 13 6 1.0862 -4.7528 -0.6153 14 7 1.5809 -5.8878 -1.2574 15 6 0.9371 -7.0655 -1.1354 16 8 -0.0199 -7.1598 -0.3964 17 6 1.4064 -8.2653 -1.9173 18 1 1.3617 -8.0468 -2.9842 19 6 0.5098 -9.4684 -1.6010 20 6 0.8913 -10.6161 -2.5391 21 6 2.3808 -10.8077 -2.5326 22 8 2.8266 -11.8552 -2.9509 23 7 3.2395 -9.8879 -2.0911 24 6 2.8428 -8.6072 -1.5195 25 6 1.8182 -3.5763 -0.6449 26 1 -0.4850 0.8400 0.0004 27 1 -0.3813 -1.7099 1.1646 28 1 -1.5536 -3.8665 1.1279 29 1 2.3883 -5.8295 -1.7918 30 1 0.6593 -9.7754 -0.5658 31 1 -0.5347 -9.1987 -1.7570 32 1 0.4067 -11.5334 -2.2048 33 1 0.5622 -10.3809 -3.5514 34 1 4.1874 -10.0835 -2.1543 35 1 3.5125 -7.8276 -1.8827 36 1 2.9128 -8.6604 -0.4330 37 1 2.7685 -3.5326 -1.1563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531924306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:33 Heat of formation + Delta-G solvation = -42.874944 kcal Electronic energy + Delta-G solvation = -22040.001637 eV Core-core repulsion = 18588.757615 eV Total energy + Delta-G solvation = -3451.244023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.77549 -39.58134 -38.04757 -36.27991 -34.61527 -33.66781 -33.17783 -30.73824 -30.47661 -28.34460 -26.05295 -24.97901 -23.73386 -21.96345 -21.71659 -20.13353 -19.15831 -18.09027 -17.66510 -16.67320 -16.33301 -15.88373 -15.55131 -15.20097 -14.98382 -14.37424 -14.28119 -14.16315 -13.87616 -13.77378 -13.48410 -13.08203 -12.46944 -12.39430 -12.04410 -11.94813 -11.53777 -11.41869 -11.28329 -11.21982 -11.02406 -10.45134 -10.08852 -9.96877 -9.85135 -9.60169 -9.40987 -9.37183 -8.04738 -7.87017 -7.11909 -6.77565 -4.70379 2.38669 2.42603 2.69840 2.96437 2.99436 3.03059 3.08172 3.33733 3.35767 3.83442 4.29568 4.36783 4.45741 4.53740 4.65512 4.99514 5.06116 5.08586 5.19122 5.42659 5.55346 5.57277 5.80198 5.90914 5.98528 6.44712 6.47349 6.48764 6.68738 6.85210 7.02842 7.08996 7.30042 7.41343 7.65407 7.85246 7.95833 8.09118 8.38609 8.55777 8.69915 8.72827 9.56216 10.09775 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038076 B = 0.003088 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.188425 B = 9065.646888 C = 9649.437937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.144 3.856 10 C -0.212 4.212 11 C 0.100 3.900 12 N -0.549 5.549 13 C 0.342 3.658 14 N -0.659 5.659 15 C 0.507 3.493 16 O -0.470 6.470 17 C -0.125 4.125 18 H 0.106 0.894 19 C -0.104 4.104 20 C -0.135 4.135 21 C 0.520 3.480 22 O -0.562 6.562 23 N -0.717 5.717 24 C 0.118 3.882 25 C -0.294 4.294 26 H 0.282 0.718 27 H 0.134 0.866 28 H 0.125 0.875 29 H 0.406 0.594 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 -10.054 -4.017 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.136 3.864 10 C -0.235 4.235 11 C -0.051 4.051 12 N -0.269 5.269 13 C 0.114 3.886 14 N -0.306 5.306 15 C 0.290 3.710 16 O -0.339 6.339 17 C -0.148 4.148 18 H 0.124 0.876 19 C -0.142 4.142 20 C -0.175 4.175 21 C 0.308 3.692 22 O -0.441 6.441 23 N -0.369 5.369 24 C -0.007 4.007 25 C -0.320 4.320 26 H 0.093 0.907 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.240 0.760 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.926 -11.308 -3.670 12.244 hybrid contribution 1.632 1.832 -0.432 2.491 sum 4.558 -9.477 -4.102 11.288 Atomic orbital electron populations 1.69714 1.07460 1.29281 1.36140 1.25934 0.94952 1.01406 0.92090 0.86149 0.80220 0.80134 0.79247 1.19414 1.20087 1.18533 1.19528 0.94611 0.89631 1.45373 0.90197 1.17630 0.91304 0.91353 0.86114 1.22408 0.98915 0.97741 1.04482 1.21952 0.98025 0.88705 0.96443 1.67168 1.11832 1.31975 1.15877 1.17996 0.91655 0.84662 0.94263 1.43482 1.28742 1.07717 1.50629 1.20190 0.84221 0.83403 0.83154 1.90810 1.25187 1.83041 1.34870 1.21706 0.95707 0.95250 1.02100 0.87601 1.21500 1.00769 0.91846 1.00094 1.21699 0.91581 1.01452 1.02771 1.20288 0.89967 0.82790 0.76198 1.90758 1.79120 1.26417 1.47774 1.45423 1.10368 1.17846 1.63307 1.21340 0.94832 0.85243 0.99275 1.21320 1.03527 0.94237 1.12905 0.90720 0.84854 0.85749 0.75963 0.90289 0.89091 0.87674 0.87985 0.76315 0.89744 0.90631 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.66 10.68 55.55 0.59 -19.07 16 2 C 0.07 1.75 5.41 -17.34 -0.09 1.66 16 3 Si 0.92 17.69 29.56 -169.99 -5.02 12.66 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.46 -11.42 9.12 -37.65 -0.34 -11.76 16 8 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 9 C 0.14 3.64 5.57 -106.55 -0.59 3.04 16 10 C -0.21 -5.32 8.76 -38.71 -0.34 -5.66 16 11 C 0.10 2.39 11.15 -17.68 -0.20 2.19 16 12 N -0.55 -13.23 7.90 -12.52 -0.10 -13.32 16 13 C 0.34 7.42 7.40 -154.70 -1.14 6.28 16 14 N -0.66 -10.58 5.32 -11.49 -0.06 -10.64 16 15 C 0.51 7.82 7.08 -10.99 -0.08 7.74 16 16 O -0.47 -9.46 14.19 5.56 0.08 -9.38 16 17 C -0.13 -1.26 2.61 -91.64 -0.24 -1.50 16 18 H 0.11 0.89 8.12 -51.93 -0.42 0.47 16 19 C -0.10 -1.03 4.71 -26.52 -0.12 -1.16 16 20 C -0.14 -1.19 6.03 -28.10 -0.17 -1.36 16 21 C 0.52 5.71 7.71 -11.87 -0.09 5.62 16 22 O -0.56 -8.36 17.78 5.56 0.10 -8.26 16 23 N -0.72 -6.21 5.45 -61.39 -0.33 -6.55 16 24 C 0.12 0.95 6.31 -4.49 -0.03 0.92 16 25 C -0.29 -6.63 9.73 -38.48 -0.37 -7.00 16 26 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 27 H 0.13 3.42 6.24 -52.49 -0.33 3.09 16 28 H 0.13 2.67 8.06 -52.49 -0.42 2.24 16 29 H 0.41 4.79 8.24 -40.82 -0.34 4.45 16 30 H 0.08 0.84 8.13 -51.92 -0.42 0.42 16 31 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.40 3.01 8.80 -40.82 -0.36 2.65 16 35 H 0.08 0.50 7.78 -51.93 -0.40 0.09 16 36 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -32.69 315.65 -8.15 -40.84 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.34 Total: 9.95 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.82 Total: -0.99 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.10 Total: -49.58 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.18 Total: -17.64 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.02 Total: 12.66 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.69 -8.15 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.036 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds