Wall clock time and date at job start Tue Mar 31 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86802 * 119.99722 * 2 1 4 4 H 1.48502 * 109.46786 * 269.99863 * 3 2 1 5 5 H 1.48492 * 109.47157 * 29.99890 * 3 2 1 6 6 H 1.48496 * 109.47080 * 150.00248 * 3 2 1 7 7 C 1.40032 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.41548 * 120.00052 * 359.91484 * 7 2 1 10 10 C 1.41173 * 120.99454 * 327.50385 * 9 7 2 11 11 C 1.37588 * 119.01140 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.10994 * 359.97438 * 11 10 9 13 13 C 1.32470 * 122.23235 * 0.02562 * 12 11 10 14 14 N 1.39470 * 119.57742 * 180.27775 * 13 12 11 15 15 C 1.34776 * 120.00154 * 353.87994 * 14 13 12 16 16 O 1.21273 * 120.00311 * 355.04886 * 15 14 13 17 17 C 1.50697 * 119.99748 * 175.04918 * 15 14 13 18 18 H 1.08999 * 109.60533 * 300.32411 * 17 15 14 19 19 C 1.53343 * 109.60542 * 180.02562 * 17 15 14 20 20 C 1.53068 * 108.43103 * 172.71481 * 19 17 15 21 21 C 1.50178 * 109.89183 * 48.89526 * 20 19 17 22 22 O 1.21278 * 118.24473 * 162.40028 * 21 20 19 23 23 N 1.33355 * 123.50562 * 342.42197 * 21 20 19 24 24 C 1.45748 * 124.10819 * 2.22422 * 23 21 20 25 25 C 1.38596 * 120.83933 * 0.02562 * 13 12 11 26 26 H 0.96996 * 120.00000 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.49677 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.44530 * 179.97438 * 11 10 9 29 29 H 0.96998 * 119.99746 * 173.88024 * 14 13 12 30 30 H 1.09008 * 109.67427 * 292.44773 * 19 17 15 31 31 H 1.08998 * 109.67503 * 52.97604 * 19 17 15 32 32 H 1.08996 * 109.40080 * 169.03206 * 20 19 17 33 33 H 1.09007 * 109.39422 * 288.85859 * 20 19 17 34 34 H 0.97000 * 117.94078 * 182.21711 * 23 21 20 35 35 H 1.09005 * 109.29916 * 220.61174 * 24 23 21 36 36 H 1.08997 * 109.30123 * 101.23872 * 24 23 21 37 37 H 1.08004 * 120.60356 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.2999 -2.4386 0.0029 10 6 0.0533 -2.5571 0.6548 11 6 -0.5997 -3.7679 0.6311 12 7 -0.0796 -4.8117 0.0109 13 6 1.0862 -4.7528 -0.6153 14 7 1.5809 -5.8878 -1.2574 15 6 0.9371 -7.0655 -1.1354 16 8 -0.0199 -7.1598 -0.3964 17 6 1.4064 -8.2653 -1.9173 18 1 1.3617 -8.0468 -2.9842 19 6 0.5098 -9.4684 -1.6010 20 6 0.8913 -10.6161 -2.5391 21 6 2.3808 -10.8077 -2.5326 22 8 2.8266 -11.8552 -2.9509 23 7 3.2395 -9.8879 -2.0911 24 6 2.8428 -8.6072 -1.5195 25 6 1.8182 -3.5763 -0.6449 26 1 -0.4850 0.8400 0.0004 27 1 -0.3813 -1.7099 1.1646 28 1 -1.5536 -3.8665 1.1279 29 1 2.3883 -5.8295 -1.7918 30 1 0.6593 -9.7754 -0.5658 31 1 -0.5347 -9.1987 -1.7570 32 1 0.4067 -11.5334 -2.2048 33 1 0.5622 -10.3809 -3.5514 34 1 4.1874 -10.0835 -2.1543 35 1 3.5125 -7.8276 -1.8827 36 1 2.9128 -8.6604 -0.4330 37 1 2.7685 -3.5326 -1.1563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531924306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:32 Heat of formation + Delta-G solvation = -65.863702 kcal Electronic energy + Delta-G solvation = -22040.998505 eV Core-core repulsion = 18588.757615 eV Total energy + Delta-G solvation = -3452.240890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80118 -40.85591 -39.61176 -37.27890 -36.23011 -35.31241 -33.98316 -32.56556 -31.54713 -29.86074 -27.88597 -25.76803 -24.82312 -23.68646 -23.13415 -21.44606 -20.12363 -19.64350 -18.77433 -17.76494 -17.65740 -17.13272 -16.77502 -16.46932 -16.13370 -16.01524 -15.80221 -15.20851 -15.05969 -14.92387 -14.66250 -14.41851 -14.16386 -13.96395 -13.19393 -12.97902 -12.89433 -12.80189 -12.76645 -12.26221 -12.10370 -11.99217 -11.81993 -11.45454 -11.19726 -10.94452 -10.84560 -10.15317 -9.89734 -9.64051 -8.83831 -8.54510 -6.58411 0.75037 0.97298 1.42662 1.53221 1.56139 1.58232 1.85109 2.03463 2.22327 2.32016 2.85503 3.41893 3.51568 3.65776 3.70128 3.75115 4.06478 4.22499 4.33515 4.39589 4.53427 4.70736 4.75461 4.84686 4.90363 4.95565 5.02275 5.05652 5.19635 5.29148 5.47020 5.65837 5.79515 6.00732 6.13940 6.25315 6.46213 6.62857 6.81759 6.86377 7.16661 7.29505 7.82226 8.34367 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038076 B = 0.003088 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.188425 B = 9065.646888 C = 9649.437937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.487 4.487 8 H 0.087 0.913 9 C 0.116 3.884 10 C -0.235 4.235 11 C 0.095 3.905 12 N -0.571 5.571 13 C 0.343 3.657 14 N -0.647 5.647 15 C 0.509 3.491 16 O -0.519 6.519 17 C -0.111 4.111 18 H 0.134 0.866 19 C -0.101 4.101 20 C -0.126 4.126 21 C 0.517 3.483 22 O -0.605 6.605 23 N -0.705 5.705 24 C 0.121 3.879 25 C -0.301 4.301 26 H 0.288 0.712 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.427 0.573 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.409 0.591 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 -10.045 -5.245 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.518 4.518 8 H 0.105 0.895 9 C 0.108 3.892 10 C -0.258 4.258 11 C -0.057 4.057 12 N -0.290 5.290 13 C 0.114 3.886 14 N -0.295 5.295 15 C 0.295 3.705 16 O -0.391 6.391 17 C -0.133 4.133 18 H 0.152 0.848 19 C -0.139 4.139 20 C -0.165 4.165 21 C 0.306 3.694 22 O -0.488 6.488 23 N -0.356 5.356 24 C -0.004 4.004 25 C -0.326 4.326 26 H 0.099 0.901 27 H 0.137 0.863 28 H 0.156 0.844 29 H 0.266 0.734 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.246 0.754 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.584 -11.310 -4.917 13.157 hybrid contribution 1.101 1.764 -0.038 2.080 sum 5.685 -9.546 -4.955 12.166 Atomic orbital electron populations 1.69797 1.08974 1.30552 1.36387 1.26848 0.95692 1.04684 0.91055 0.85044 0.78865 0.75422 0.79421 1.18771 1.19547 1.17905 1.19843 0.95100 0.90362 1.46528 0.89539 1.18038 0.91739 0.92720 0.86729 1.22340 0.99810 0.97789 1.05884 1.22193 0.98572 0.88509 0.96393 1.67292 1.13117 1.31893 1.16743 1.18292 0.90745 0.86282 0.93260 1.43451 1.29494 1.06462 1.50122 1.21058 0.83090 0.84058 0.82317 1.90799 1.27404 1.83858 1.37037 1.21642 0.96747 0.92377 1.02501 0.84835 1.21443 1.00362 0.92189 0.99877 1.21660 0.90244 1.01146 1.03473 1.20616 0.90839 0.82360 0.75616 1.90748 1.79848 1.28168 1.50022 1.45335 1.10663 1.17488 1.62122 1.21406 0.94021 0.85694 0.99264 1.21532 1.04483 0.93827 1.12744 0.90106 0.86328 0.84371 0.73354 0.91359 0.89917 0.87054 0.86102 0.75398 0.86520 0.90946 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.46 10.68 21.84 0.23 -41.22 16 2 C 0.03 1.51 5.41 85.29 0.46 1.97 16 3 Si 0.99 35.67 29.56 68.60 2.03 37.70 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 7 C -0.49 -24.29 9.12 23.52 0.21 -24.07 16 8 H 0.09 4.04 7.85 -2.91 -0.02 4.02 16 9 C 0.12 5.92 5.57 -21.11 -0.12 5.80 16 10 C -0.23 -12.12 8.76 22.84 0.20 -11.92 16 11 C 0.09 4.63 11.15 84.50 0.94 5.57 16 12 N -0.57 -27.60 7.90 -193.53 -1.53 -29.13 16 13 C 0.34 14.62 7.40 132.75 0.98 15.60 16 14 N -0.65 -19.32 5.32 -308.67 -1.64 -20.96 16 15 C 0.51 14.73 7.08 87.66 0.62 15.35 16 16 O -0.52 -20.63 14.19 -3.01 -0.04 -20.68 16 17 C -0.11 -1.90 2.61 -11.45 -0.03 -1.93 16 18 H 0.13 1.67 8.12 -2.39 -0.02 1.65 16 19 C -0.10 -1.81 4.71 30.73 0.14 -1.66 16 20 C -0.13 -1.92 6.03 29.71 0.18 -1.74 16 21 C 0.52 10.22 7.71 87.71 0.68 10.90 16 22 O -0.61 -17.23 17.78 -3.02 -0.05 -17.28 16 23 N -0.71 -10.17 5.45 -467.33 -2.55 -12.72 16 24 C 0.12 1.53 6.31 86.49 0.55 2.07 16 25 C -0.30 -13.33 9.73 22.98 0.22 -13.11 16 26 H 0.29 13.05 8.29 -92.71 -0.77 12.29 16 27 H 0.12 6.36 6.24 -2.91 -0.02 6.34 16 28 H 0.14 6.10 8.06 -2.91 -0.02 6.08 16 29 H 0.43 8.61 8.24 -92.71 -0.76 7.84 16 30 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 31 H 0.08 1.67 7.90 -2.39 -0.02 1.65 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.41 4.99 8.80 -92.71 -0.82 4.17 16 35 H 0.12 0.82 7.78 -2.38 -0.02 0.80 16 36 H 0.07 1.04 8.11 -2.39 -0.02 1.03 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -72.74 315.65 1.04 -71.70 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.45 Total: 29.76 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.04 Total: 2.84 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -5.48 Total: -104.03 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.10 Total: -37.96 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -72.74 1.04 -71.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.832 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds