Wall clock time and date at job start Tue Mar 31 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86802 * 120.00198 * 2 1 4 4 H 1.48501 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47154 * 299.99536 * 3 2 1 6 6 H 1.48499 * 109.47084 * 59.99638 * 3 2 1 7 7 C 1.40038 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00183 * 190.73071 * 7 2 1 9 9 C 1.41541 * 119.99680 * 10.73609 * 7 2 1 10 10 C 1.41178 * 120.99244 * 206.51572 * 9 7 2 11 11 C 1.37590 * 119.01465 * 179.97438 * 10 9 7 12 12 N 1.32088 * 121.10866 * 0.02562 * 11 10 9 13 13 C 1.32466 * 122.22953 * 359.97438 * 12 11 10 14 14 N 1.39474 * 119.57716 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99759 * 201.24831 * 14 13 12 16 16 O 1.21271 * 119.99961 * 354.34764 * 15 14 13 17 17 C 1.50704 * 119.99797 * 174.34611 * 15 14 13 18 18 C 1.50701 * 112.84976 * 57.09625 * 17 15 14 19 19 N 1.34776 * 119.99602 * 56.77267 * 18 17 15 20 20 O 1.21278 * 119.99859 * 236.76891 * 18 17 15 21 21 C 1.53786 * 113.61094 * 285.90285 * 17 15 14 22 22 C 1.53961 * 87.01425 * 220.04676 * 21 17 15 23 23 C 1.53774 * 113.61362 * 188.29783 * 17 15 14 24 24 C 1.38597 * 120.84350 * 0.25592 * 13 12 11 25 25 H 0.96998 * 120.00077 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.49285 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.44879 * 180.02562 * 11 10 9 28 28 H 0.96996 * 120.00210 * 21.52658 * 14 13 12 29 29 H 0.97000 * 120.00354 * 4.43501 * 19 18 17 30 30 H 0.97003 * 119.99624 * 184.43293 * 19 18 17 31 31 H 1.08996 * 113.61441 * 334.56284 * 21 17 15 32 32 H 1.09006 * 113.61478 * 105.47276 * 21 17 15 33 33 H 1.08994 * 113.54069 * 270.80854 * 22 21 17 34 34 H 1.09005 * 113.73778 * 139.94840 * 22 21 17 35 35 H 1.09004 * 113.61503 * 254.52613 * 23 17 15 36 36 H 1.08997 * 113.61723 * 25.34216 * 23 17 15 37 37 H 1.07998 * 120.60056 * 179.72610 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0733 -1.2209 0.1747 9 6 1.3184 -2.4279 -0.2273 10 6 1.8069 -3.6483 0.2877 11 6 1.1040 -4.8053 0.0420 12 7 -0.0122 -4.7888 -0.6640 13 6 -0.5124 -3.6710 -1.1689 14 7 -1.6951 -3.7176 -1.9066 15 6 -1.9919 -2.7239 -2.7675 16 8 -1.2841 -1.7409 -2.8262 17 6 -3.2034 -2.8344 -3.6571 18 6 -4.4810 -3.0353 -2.8835 19 7 -4.8461 -2.1427 -1.9420 20 8 -5.1807 -4.0000 -3.1084 21 6 -3.0252 -3.8246 -4.8201 22 6 -3.7762 -2.8057 -5.6966 23 6 -3.2928 -1.7237 -4.7167 24 6 0.1276 -2.4565 -0.9783 25 1 -0.4850 0.8400 -0.0004 26 1 2.7182 -3.6731 0.8665 27 1 1.4711 -5.7427 0.4330 28 1 -2.3059 -4.4631 -1.7973 29 1 -4.3210 -1.3384 -1.8066 30 1 -5.6339 -2.3046 -1.3998 31 1 -1.9858 -3.9708 -5.1138 32 1 -3.5629 -4.7626 -4.6813 33 1 -4.8574 -2.9441 -5.6958 34 1 -3.3636 -2.7019 -6.7002 35 1 -4.0463 -0.9679 -4.4946 36 1 -2.3269 -1.2934 -4.9810 37 1 -0.2813 -1.5481 -1.3954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531925397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:05 Heat of formation + Delta-G solvation = -16.749062 kcal Electronic energy + Delta-G solvation = -23177.762607 eV Core-core repulsion = 19727.651488 eV Total energy + Delta-G solvation = -3450.111119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.19039 -39.22789 -37.89051 -36.79155 -34.48032 -33.72269 -33.63582 -30.56130 -29.10718 -27.02244 -25.91391 -25.72962 -22.61879 -22.15284 -21.49309 -20.24943 -19.05884 -18.18932 -17.42680 -17.19402 -16.13972 -15.89405 -15.31043 -15.16313 -14.86412 -14.52162 -14.25573 -14.10003 -13.68177 -13.28338 -12.84929 -12.62742 -12.51882 -12.45363 -12.02767 -11.51476 -11.37300 -11.10409 -11.06199 -10.88595 -10.52166 -10.43853 -10.18449 -10.05279 -9.79113 -9.76113 -9.36527 -8.79636 -8.11727 -7.90935 -7.07804 -6.75138 -4.57154 2.33968 2.48775 2.82539 3.04131 3.05259 3.10277 3.26544 3.40878 3.41912 3.89399 4.38714 4.43330 4.66540 4.69284 4.76678 4.90191 5.32722 5.57978 5.66866 5.73756 5.82591 5.87260 5.91374 5.95207 6.27474 6.49937 6.65904 6.71337 6.78128 7.00962 7.12967 7.20497 7.35969 7.57728 7.82325 7.88133 8.11127 8.30663 8.46375 8.67641 8.78484 8.87566 9.52047 10.13806 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.005592 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.065145 B = 5006.277569 C = 5906.450396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.451 4.451 8 H 0.081 0.919 9 C 0.131 3.869 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.599 5.599 13 C 0.310 3.690 14 N -0.642 5.642 15 C 0.524 3.476 16 O -0.489 6.489 17 C -0.138 4.138 18 C 0.550 3.450 19 N -0.845 5.845 20 O -0.535 6.535 21 C -0.107 4.107 22 C -0.140 4.140 23 C -0.101 4.101 24 C -0.215 4.215 25 H 0.281 0.719 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.401 0.599 29 H 0.408 0.592 30 H 0.404 0.596 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.951 0.142 -6.551 10.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.122 3.878 10 C -0.309 4.309 11 C -0.036 4.036 12 N -0.319 5.319 13 C 0.089 3.911 14 N -0.286 5.286 15 C 0.308 3.692 16 O -0.362 6.362 17 C -0.145 4.145 18 C 0.333 3.667 19 N -0.408 5.408 20 O -0.411 6.411 21 C -0.145 4.145 22 C -0.178 4.178 23 C -0.139 4.139 24 C -0.239 4.239 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.142 0.858 28 H 0.235 0.765 29 H 0.237 0.763 30 H 0.236 0.764 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.451 -0.447 -7.060 11.021 hybrid contribution 0.481 1.355 0.831 1.661 sum -7.971 0.909 -6.229 10.157 Atomic orbital electron populations 1.69736 1.07573 1.29154 1.34001 1.25954 0.94867 1.01440 0.92144 0.86182 0.80825 0.80671 0.78590 1.18367 1.19573 1.19911 1.19614 0.95972 0.90120 1.42502 0.90050 1.17846 0.90945 0.92295 0.86673 1.21888 1.04409 0.94554 1.10097 1.21511 0.90360 0.96661 0.95072 1.66574 1.16748 1.28961 1.19662 1.18165 0.87397 0.90897 0.94649 1.43083 1.21126 1.24443 1.39920 1.19749 0.86126 0.83236 0.80069 1.90695 1.49839 1.29718 1.65958 1.22400 0.92339 1.04021 0.95691 1.19531 0.85566 0.82185 0.79409 1.43781 1.32721 1.25476 1.38857 1.90733 1.53795 1.30088 1.66486 1.22845 1.02052 0.97756 0.91862 1.22901 1.00707 0.95718 0.98452 1.22843 1.03672 0.94923 0.92493 1.23092 0.99692 0.97861 1.03287 0.90842 0.88001 0.85817 0.76485 0.76259 0.76437 0.88739 0.89070 0.89718 0.90419 0.90649 0.87427 0.80328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.92 10.78 55.55 0.60 -19.32 16 2 C 0.08 1.89 5.29 -17.34 -0.09 1.79 16 3 Si 0.91 18.53 29.57 -169.99 -5.03 13.51 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.45 -11.93 9.13 -37.65 -0.34 -12.28 16 8 H 0.08 2.05 7.87 -52.49 -0.41 1.64 16 9 C 0.13 3.54 5.59 -106.55 -0.60 2.95 16 10 C -0.29 -7.01 9.90 -38.70 -0.38 -7.40 16 11 C 0.12 2.75 11.15 -17.68 -0.20 2.55 16 12 N -0.60 -14.48 10.36 -12.52 -0.13 -14.61 16 13 C 0.31 7.58 7.51 -154.70 -1.16 6.41 16 14 N -0.64 -12.86 5.37 -11.49 -0.06 -12.92 16 15 C 0.52 9.73 6.62 -10.98 -0.07 9.65 16 16 O -0.49 -10.76 12.64 5.56 0.07 -10.69 16 17 C -0.14 -1.96 1.06 -156.00 -0.17 -2.12 16 18 C 0.55 7.69 6.58 -10.99 -0.07 7.62 16 19 N -0.85 -9.63 8.79 31.22 0.27 -9.35 16 20 O -0.53 -8.68 16.72 5.56 0.09 -8.59 16 21 C -0.11 -1.36 7.05 -25.82 -0.18 -1.54 16 22 C -0.14 -1.50 7.81 -25.83 -0.20 -1.70 16 23 C -0.10 -1.23 6.94 -25.93 -0.18 -1.41 16 24 C -0.22 -5.76 7.56 -38.48 -0.29 -6.05 16 25 H 0.28 6.49 8.29 -40.82 -0.34 6.16 16 26 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 28 H 0.40 7.27 8.65 -40.82 -0.35 6.92 16 29 H 0.41 4.49 8.79 -40.82 -0.36 4.13 16 30 H 0.40 3.82 8.93 -40.82 -0.36 3.46 16 31 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 32 H 0.09 1.18 7.36 -51.93 -0.38 0.79 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.11 1.41 7.55 -51.93 -0.39 1.02 16 37 H 0.18 4.90 3.25 -53.08 -0.17 4.73 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -31.52 317.04 -7.45 -38.96 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -4.10 Total: 19.75 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -3.94 Total: -1.52 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.68 Total: -56.20 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.16 Total: -19.28 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.52 -7.45 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531925397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.212 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds