Wall clock time and date at job start Tue Mar 31 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46760 * 124.34729 * 2 1 4 4 C 1.54485 * 105.46896 * 197.03905 * 3 2 1 5 5 H 1.08999 * 110.99719 * 216.45119 * 4 3 2 6 6 C 1.50699 * 110.96970 * 92.70764 * 4 3 2 7 7 O 1.21272 * 119.99850 * 6.16480 * 6 4 3 8 8 N 1.34771 * 119.99861 * 186.16284 * 6 4 3 9 9 C 1.39470 * 119.99780 * 175.25308 * 8 6 4 10 10 C 1.38600 * 119.58226 * 186.45706 * 9 8 6 11 11 C 1.40804 * 118.80107 * 180.02562 * 10 9 8 12 12 C 1.41544 * 120.99945 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99700 * 338.93413 * 12 11 10 14 14 C 1.40031 * 120.00176 * 158.93392 * 12 11 10 15 15 N 1.30743 * 119.99909 * 345.88123 * 14 12 11 16 16 Si 1.86799 * 120.00049 * 165.87281 * 14 12 11 17 17 H 1.48504 * 109.46713 * 60.00316 * 16 14 12 18 18 H 1.48497 * 109.47279 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47381 * 300.00656 * 16 14 12 20 20 C 1.41176 * 118.00570 * 0.02562 * 11 10 9 21 21 C 1.37588 * 119.01542 * 359.97438 * 20 11 10 22 22 N 1.32080 * 121.10892 * 359.97438 * 21 20 11 23 23 C 1.54623 * 101.76462 * 334.58501 * 4 3 2 24 24 C 1.34414 * 124.34616 * 180.02562 * 2 1 3 25 25 O 1.21283 * 124.94549 * 359.60126 * 24 2 1 26 26 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46625 * 299.99985 * 1 2 3 28 28 H 1.09002 * 109.46720 * 59.99864 * 1 2 3 29 29 H 1.08994 * 110.24399 * 78.04384 * 3 2 1 30 30 H 1.08997 * 110.24837 * 316.03592 * 3 2 1 31 31 H 0.96998 * 120.00035 * 355.26205 * 8 6 4 32 32 H 1.08006 * 120.59924 * 0.02562 * 10 9 8 33 33 H 0.96993 * 119.99911 * 180.02562 * 15 14 12 34 34 H 1.08005 * 120.49515 * 180.02562 * 20 11 10 35 35 H 1.08001 * 119.44454 * 179.97438 * 21 20 11 36 36 H 1.09005 * 110.48544 * 143.47835 * 23 4 3 37 37 H 1.09005 * 110.48764 * 266.12018 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7487 -0.4363 5 1 4.4759 1.3008 0.0955 6 6 3.8745 0.8819 -1.9273 7 8 3.0102 1.4110 -2.5935 8 7 4.9902 0.4131 -2.5204 9 6 5.1080 0.4465 -3.9097 10 6 6.1964 -0.1580 -4.5188 11 6 6.2992 -0.1140 -5.9224 12 6 7.3913 -0.7154 -6.5925 13 1 8.3101 -0.9115 -6.0598 14 6 7.2804 -1.0563 -7.9462 15 7 6.1058 -1.0807 -8.5200 16 14 8.8105 -1.4757 -8.9321 17 1 9.4869 -2.6482 -8.3212 18 1 8.4258 -1.7995 -10.3294 19 1 9.7352 -0.3139 -8.9293 20 6 5.2810 0.5490 -6.6411 21 6 4.2383 1.1199 -5.9483 22 7 4.1783 1.0555 -4.6304 23 6 3.6898 -0.7378 -0.0110 24 6 2.2235 -1.1098 -0.0005 25 8 1.7946 -2.2442 0.0059 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.3310 1.6426 1.0004 30 1 1.8983 1.9384 -0.7099 31 1 5.7112 0.0524 -1.9810 32 1 6.9520 -0.6539 -3.9274 33 1 6.0290 -1.3172 -9.4576 34 1 5.3194 0.6066 -7.7190 35 1 3.4558 1.6292 -6.4912 36 1 4.2324 -1.3458 -0.7350 37 1 4.1198 -0.8533 0.9840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532181132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:46 Heat of formation + Delta-G solvation = -49.836658 kcal Electronic energy + Delta-G solvation = -22332.629915 eV Core-core repulsion = 18881.084010 eV Total energy + Delta-G solvation = -3451.545905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00102 -40.76385 -39.45549 -37.34147 -36.26966 -35.37930 -33.88155 -32.60381 -30.41121 -28.69911 -27.98379 -27.72536 -24.91773 -23.67936 -22.88346 -20.99452 -20.62482 -19.69484 -18.70637 -17.86455 -17.60748 -16.94712 -16.85818 -16.48875 -16.07911 -15.97556 -15.78811 -15.20459 -14.78380 -14.63332 -14.59261 -14.27681 -14.17834 -13.52497 -13.29697 -13.19662 -13.07231 -12.89307 -12.86618 -12.80608 -12.46670 -12.06848 -11.86691 -11.46181 -11.18608 -11.01808 -10.90467 -10.01132 -9.75993 -9.61726 -8.87434 -8.62687 -6.59583 0.75227 0.96351 1.40342 1.46586 1.52766 1.56051 1.85389 2.02992 2.13064 2.20050 2.80069 3.24390 3.33515 3.56024 3.75018 3.86853 4.17964 4.32554 4.39390 4.46705 4.65153 4.69437 4.74742 4.79602 4.82681 4.86005 4.88909 4.94825 5.03488 5.25360 5.47830 5.47948 5.63776 5.95784 6.05109 6.11471 6.43543 6.63238 6.78313 6.81973 7.05818 7.29727 7.84171 8.23914 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.003458 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.641618 B = 8095.296827 C = 8277.509332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.623 5.623 3 C 0.114 3.886 4 C -0.107 4.107 5 H 0.183 0.817 6 C 0.497 3.503 7 O -0.522 6.522 8 N -0.647 5.647 9 C 0.346 3.654 10 C -0.316 4.316 11 C 0.113 3.887 12 C -0.479 4.479 13 H 0.089 0.911 14 C 0.034 3.966 15 N -0.815 5.815 16 Si 0.993 3.007 17 H -0.256 1.256 18 H -0.269 1.269 19 H -0.257 1.257 20 C -0.250 4.250 21 C 0.094 3.906 22 N -0.579 5.579 23 C -0.137 4.137 24 C 0.497 3.503 25 O -0.588 6.588 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.428 0.572 32 H 0.125 0.875 33 H 0.292 0.708 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 4.144 16.069 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.356 5.356 3 C -0.008 4.008 4 C -0.128 4.128 5 H 0.200 0.800 6 C 0.283 3.717 7 O -0.394 6.394 8 N -0.295 5.295 9 C 0.117 3.883 10 C -0.341 4.341 11 C 0.105 3.895 12 C -0.509 4.509 13 H 0.107 0.893 14 C -0.183 4.183 15 N -0.440 5.440 16 Si 0.812 3.188 17 H -0.180 1.180 18 H -0.193 1.193 19 H -0.181 1.181 20 C -0.273 4.273 21 C -0.057 4.057 22 N -0.299 5.299 23 C -0.177 4.177 24 C 0.287 3.713 25 O -0.470 6.470 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.100 0.900 31 H 0.267 0.733 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.117 0.883 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.293 4.316 15.876 16.611 hybrid contribution 1.137 -0.884 -1.317 1.952 sum -1.156 3.432 14.559 15.003 Atomic orbital electron populations 1.21668 0.77472 1.03020 1.03081 1.48348 1.07517 1.07762 1.71927 1.22274 0.87663 0.86596 1.04269 1.22464 1.01746 0.98444 0.90173 0.80025 1.21399 0.81151 0.77732 0.91405 1.90782 1.41626 1.40728 1.66262 1.43392 1.20684 1.61789 1.03683 1.18306 0.91410 0.93879 0.84715 1.21390 1.02535 1.14857 0.95345 1.18018 0.92277 0.87853 0.91373 1.19928 0.99942 1.35366 0.95677 0.89252 1.26956 1.00527 0.92111 0.98704 1.69812 1.26501 1.33584 1.14098 0.85088 0.77056 0.79848 0.76773 1.18019 1.19342 1.18127 1.22377 0.98623 1.04989 1.01334 1.22162 0.96924 0.97163 0.89412 1.67308 1.29638 1.25265 1.07720 1.22453 0.92827 0.94792 1.07609 1.21599 0.91212 0.84091 0.74433 1.90686 1.79807 1.23131 1.53364 0.91751 0.88674 0.92164 0.85266 0.90040 0.73313 0.85741 0.89693 0.85831 0.84648 0.88305 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.83 11.14 127.77 1.42 3.25 16 2 N -0.62 -14.50 3.33 -842.90 -2.81 -17.30 16 3 C 0.11 1.93 6.73 86.83 0.58 2.51 16 4 C -0.11 -1.79 3.55 -10.48 -0.04 -1.83 16 5 H 0.18 1.12 8.14 -2.39 -0.02 1.10 16 6 C 0.50 15.60 7.12 87.66 0.62 16.22 16 7 O -0.52 -22.01 13.77 -3.00 -0.04 -22.05 16 8 N -0.65 -21.40 5.08 -308.67 -1.57 -22.96 16 9 C 0.35 15.85 7.41 132.75 0.98 16.83 16 10 C -0.32 -14.95 9.73 22.98 0.22 -14.73 16 11 C 0.11 6.02 5.64 -21.11 -0.12 5.90 16 12 C -0.48 -24.55 9.14 23.52 0.21 -24.34 16 13 H 0.09 4.26 7.89 -2.91 -0.02 4.24 16 14 C 0.03 1.64 5.28 85.29 0.45 2.09 16 15 N -0.81 -41.30 10.60 21.84 0.23 -41.07 16 16 Si 0.99 35.94 29.58 68.60 2.03 37.97 16 17 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 18 H -0.27 -9.31 7.11 99.48 0.71 -8.61 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 20 C -0.25 -13.44 8.82 22.84 0.20 -13.24 16 21 C 0.09 4.86 11.15 84.50 0.94 5.80 16 22 N -0.58 -29.78 7.86 -193.53 -1.52 -31.30 16 23 C -0.14 -2.41 6.39 30.59 0.20 -2.21 16 24 C 0.50 13.83 8.02 87.90 0.71 14.53 16 25 O -0.59 -21.97 17.35 -3.04 -0.05 -22.03 16 26 H 0.06 1.53 7.53 -2.39 -0.02 1.51 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.77 6.94 -2.39 -0.02 1.75 16 31 H 0.43 9.92 8.66 -92.71 -0.80 9.12 16 32 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 33 H 0.29 13.34 8.29 -92.71 -0.77 12.57 16 34 H 0.12 6.81 5.88 -2.91 -0.02 6.79 16 35 H 0.14 6.34 8.06 -2.91 -0.02 6.32 16 36 H 0.10 2.01 7.63 -2.38 -0.02 1.99 16 37 H 0.16 1.37 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -80.74 318.67 2.97 -77.76 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.31 Total: 30.20 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.39 Total: 10.79 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -5.67 Total: -112.64 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.09 Total: -44.08 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -80.74 2.97 -77.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532181132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.927 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds