Wall clock time and date at job start Tue Mar 31 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34778 * 120.00267 * 2 1 4 4 O 1.21279 * 119.99456 * 355.00278 * 3 2 1 5 5 C 1.50701 * 120.00380 * 175.28264 * 3 2 1 6 6 C 1.50695 * 115.54806 * 302.29476 * 5 3 2 7 7 O 1.21277 * 120.00563 * 113.76573 * 6 5 3 8 8 N 1.34782 * 119.99722 * 293.76655 * 6 5 3 9 9 C 1.39469 * 119.99752 * 175.00344 * 8 6 5 10 10 C 1.38602 * 119.58153 * 185.14574 * 9 8 6 11 11 C 1.40805 * 118.80088 * 179.97438 * 10 9 8 12 12 C 1.41539 * 121.00107 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00146 * 152.64068 * 12 11 10 14 14 C 1.40035 * 119.99952 * 332.65449 * 12 11 10 15 15 N 1.30735 * 120.00350 * 163.47941 * 14 12 11 16 16 Si 1.86806 * 119.99547 * 343.47153 * 14 12 11 17 17 H 1.48499 * 109.46880 * 89.12863 * 16 14 12 18 18 H 1.48498 * 109.46938 * 209.12596 * 16 14 12 19 19 H 1.48498 * 109.47172 * 329.12575 * 16 14 12 20 20 C 1.41183 * 118.00508 * 359.97438 * 11 10 9 21 21 C 1.37590 * 119.01446 * 0.02562 * 20 11 10 22 22 N 1.32085 * 121.10957 * 359.74633 * 21 20 11 23 23 C 1.53000 * 117.49724 * 156.62310 * 5 3 2 24 24 C 1.52993 * 117.49643 * 87.96068 * 5 3 2 25 25 H 1.09006 * 109.47383 * 299.99928 * 1 2 3 26 26 H 1.09000 * 109.47596 * 60.00428 * 1 2 3 27 27 H 1.09006 * 109.47180 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99914 * 179.97438 * 2 1 3 29 29 H 0.96995 * 120.00250 * 354.99366 * 8 6 5 30 30 H 1.08001 * 120.59346 * 359.95319 * 10 9 8 31 31 H 0.96997 * 120.00163 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.48942 * 179.97438 * 20 11 10 33 33 H 1.08003 * 119.44202 * 180.02562 * 21 20 11 34 34 H 1.08994 * 117.49885 * 359.97438 * 23 5 3 35 35 H 1.08999 * 117.49285 * 145.02261 * 23 5 3 36 36 H 1.09010 * 117.49814 * 214.97843 * 24 5 3 37 37 H 1.08995 * 117.50491 * 359.97438 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5359 2.2155 -0.0915 5 6 3.6421 1.1694 0.1073 6 6 4.2074 0.4919 1.3289 7 8 4.8623 -0.5221 1.2115 8 7 3.9851 1.0127 2.5519 9 6 4.4183 0.3315 3.6892 10 6 4.0923 0.8195 4.9448 11 6 4.5377 0.1184 6.0818 12 6 4.2322 0.5753 7.3861 13 1 4.1691 -0.1276 8.2036 14 6 4.0113 1.9388 7.6165 15 7 3.4227 2.3290 8.7167 16 14 4.5582 3.2002 6.3518 17 1 3.4654 3.4241 5.3715 18 1 4.8798 4.4788 7.0351 19 1 5.7639 2.7005 5.6435 20 6 5.2983 -1.0541 5.8818 21 6 5.5719 -1.4609 4.5962 22 7 5.1315 -0.7769 3.5556 23 6 4.3868 2.3930 -0.4303 24 6 4.4431 1.0664 -1.1920 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9499 -0.8401 0.0004 29 1 3.5241 1.8614 2.6412 30 1 3.5075 1.7215 5.0492 31 1 3.2701 3.2735 8.8764 32 1 5.6606 -1.6228 6.7254 33 1 6.1528 -2.3571 4.4352 34 1 3.7896 3.1961 -0.8619 35 1 5.2860 2.7076 0.0995 36 1 5.3795 0.5090 -1.1632 37 1 3.8831 0.9966 -2.1245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532181150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:58 Heat of formation + Delta-G solvation = -2.494538 kcal Electronic energy + Delta-G solvation = -22694.962298 eV Core-core repulsion = 19245.469301 eV Total energy + Delta-G solvation = -3449.492997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76248 -39.37724 -38.12617 -36.08246 -34.74355 -34.47141 -33.85165 -31.36929 -29.18131 -27.74032 -26.08971 -24.78552 -22.66424 -22.45581 -22.18772 -20.62819 -19.65412 -18.39595 -17.81481 -16.52005 -16.18562 -15.83760 -15.63598 -15.28047 -15.01681 -14.61883 -14.41799 -14.08558 -14.05084 -13.30959 -13.00850 -12.98286 -12.95239 -12.62270 -12.46737 -11.82067 -11.70025 -11.23544 -11.02251 -10.90292 -10.79485 -10.72432 -10.24090 -10.09908 -9.88297 -9.62522 -9.37528 -9.32184 -8.31953 -7.96175 -7.35278 -7.12907 -4.79668 2.10616 2.31057 2.56195 2.84638 2.93286 3.00470 3.10247 3.18778 3.22349 3.68974 3.82943 4.45376 4.49386 4.55524 4.62761 4.72268 5.04944 5.32076 5.34703 5.36831 5.46737 5.60000 5.64404 5.70138 5.90412 6.17265 6.24396 6.29387 6.36656 6.50465 6.88362 7.04957 7.15749 7.23826 7.48159 7.64600 7.92489 7.98435 8.13428 8.33973 8.51494 8.59391 9.36126 9.88059 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.005093 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.882582 B = 5496.598884 C = 5905.007018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.726 5.726 3 C 0.559 3.441 4 O -0.530 6.530 5 C -0.203 4.203 6 C 0.543 3.457 7 O -0.463 6.463 8 N -0.654 5.654 9 C 0.368 3.632 10 C -0.326 4.326 11 C 0.127 3.873 12 C -0.434 4.434 13 H 0.096 0.904 14 C 0.086 3.914 15 N -0.796 5.796 16 Si 0.920 3.080 17 H -0.268 1.268 18 H -0.290 1.290 19 H -0.248 1.248 20 C -0.271 4.271 21 C 0.128 3.872 22 N -0.558 5.558 23 C -0.130 4.130 24 C -0.124 4.124 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.408 0.592 29 H 0.410 0.590 30 H 0.112 0.888 31 H 0.289 0.711 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 -0.244 -15.217 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.377 5.377 3 C 0.344 3.656 4 O -0.407 6.407 5 C -0.209 4.209 6 C 0.326 3.674 7 O -0.332 6.332 8 N -0.300 5.300 9 C 0.142 3.858 10 C -0.351 4.351 11 C 0.119 3.881 12 C -0.464 4.464 13 H 0.114 0.886 14 C -0.136 4.136 15 N -0.419 5.419 16 Si 0.747 3.253 17 H -0.195 1.195 18 H -0.217 1.217 19 H -0.171 1.171 20 C -0.295 4.295 21 C -0.023 4.023 22 N -0.278 5.278 23 C -0.168 4.168 24 C -0.161 4.161 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.242 0.758 29 H 0.246 0.754 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.053 -0.403 -16.037 16.173 hybrid contribution -0.266 0.960 0.729 1.234 sum -2.319 0.558 -15.308 15.493 Atomic orbital electron populations 1.21590 0.79042 1.02573 1.02440 1.45726 1.07971 1.08828 1.75213 1.19085 0.86950 0.83808 0.75735 1.90709 1.69386 1.31451 1.49118 1.21604 0.92676 1.08760 0.97888 1.19086 0.80952 0.84793 0.82598 1.90809 1.35290 1.22230 1.84885 1.43463 1.57678 1.24315 1.04513 1.17977 0.93169 0.90835 0.83866 1.21339 1.14982 1.07388 0.91407 1.17674 0.87304 0.90676 0.92457 1.19530 1.39086 0.93663 0.94144 0.88593 1.26216 0.91105 1.00183 0.96058 1.69625 1.28027 1.19178 1.25088 0.86248 0.81253 0.77952 0.79875 1.19471 1.21736 1.17104 1.21896 1.07903 1.02689 0.96987 1.21892 0.95687 0.96706 0.88056 1.67292 1.17975 1.08560 1.33949 1.23113 1.01101 0.91203 1.01333 1.23058 1.01226 0.99852 0.92009 0.91951 0.92033 0.90375 0.75806 0.75443 0.87097 0.90033 0.87148 0.85190 0.86673 0.87246 0.86608 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.71 59.84 0.64 1.48 16 2 N -0.73 -8.56 5.69 -67.08 -0.38 -8.94 16 3 C 0.56 7.85 7.12 -10.98 -0.08 7.77 16 4 O -0.53 -8.72 16.52 5.56 0.09 -8.63 16 5 C -0.20 -2.74 2.29 -156.82 -0.36 -3.10 16 6 C 0.54 9.51 7.01 -10.99 -0.08 9.43 16 7 O -0.46 -9.48 14.97 5.56 0.08 -9.40 16 8 N -0.65 -12.44 5.39 -11.49 -0.06 -12.50 16 9 C 0.37 8.38 7.42 -154.70 -1.15 7.24 16 10 C -0.33 -7.76 7.18 -38.48 -0.28 -8.04 16 11 C 0.13 3.17 5.20 -106.55 -0.55 2.62 16 12 C -0.43 -11.33 9.65 -37.65 -0.36 -11.69 16 13 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 14 C 0.09 2.16 5.45 -17.35 -0.09 2.07 16 15 N -0.80 -20.30 13.92 55.55 0.77 -19.53 16 16 Si 0.92 20.23 24.49 -169.99 -4.16 16.07 16 17 H -0.27 -5.63 6.40 56.52 0.36 -5.27 16 18 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.25 -5.67 6.97 56.52 0.39 -5.28 16 20 C -0.27 -6.21 9.90 -38.70 -0.38 -6.60 16 21 C 0.13 2.83 11.15 -17.68 -0.20 2.63 16 22 N -0.56 -13.12 7.85 -12.52 -0.10 -13.22 16 23 C -0.13 -1.46 9.75 -26.69 -0.26 -1.72 16 24 C -0.12 -1.32 9.76 -26.69 -0.26 -1.58 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.41 4.40 8.83 -40.82 -0.36 4.04 16 29 H 0.41 6.97 8.70 -40.82 -0.36 6.61 16 30 H 0.11 2.58 4.20 -52.49 -0.22 2.36 16 31 H 0.29 6.65 8.29 -40.82 -0.34 6.32 16 32 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 33 H 0.13 2.44 8.06 -52.48 -0.42 2.02 16 34 H 0.12 1.22 7.86 -51.93 -0.41 0.81 16 35 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.12 1.26 8.01 -51.92 -0.42 0.84 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -31.57 322.69 -6.63 -38.20 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.32 Total: 12.57 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -3.41 Total: 0.51 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.23 Total: -54.18 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.18 Total: -18.03 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.16 Total: 16.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.57 -6.63 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532181150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.701 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds