Wall clock time and date at job start Tue Mar 31 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34778 * 120.00267 * 2 1 4 4 O 1.21279 * 119.99456 * 355.00278 * 3 2 1 5 5 C 1.50701 * 120.00380 * 175.28264 * 3 2 1 6 6 C 1.50695 * 115.54806 * 302.29476 * 5 3 2 7 7 O 1.21277 * 120.00563 * 113.76573 * 6 5 3 8 8 N 1.34782 * 119.99722 * 293.76655 * 6 5 3 9 9 C 1.39469 * 119.99752 * 175.00344 * 8 6 5 10 10 C 1.38602 * 119.58153 * 185.14574 * 9 8 6 11 11 C 1.40805 * 118.80088 * 179.97438 * 10 9 8 12 12 C 1.41539 * 121.00107 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00146 * 152.64068 * 12 11 10 14 14 C 1.40035 * 119.99952 * 332.65449 * 12 11 10 15 15 N 1.30735 * 120.00350 * 163.47941 * 14 12 11 16 16 Si 1.86806 * 119.99547 * 343.47153 * 14 12 11 17 17 H 1.48499 * 109.46880 * 89.12863 * 16 14 12 18 18 H 1.48498 * 109.46938 * 209.12596 * 16 14 12 19 19 H 1.48498 * 109.47172 * 329.12575 * 16 14 12 20 20 C 1.41183 * 118.00508 * 359.97438 * 11 10 9 21 21 C 1.37590 * 119.01446 * 0.02562 * 20 11 10 22 22 N 1.32085 * 121.10957 * 359.74633 * 21 20 11 23 23 C 1.53000 * 117.49724 * 156.62310 * 5 3 2 24 24 C 1.52993 * 117.49643 * 87.96068 * 5 3 2 25 25 H 1.09006 * 109.47383 * 299.99928 * 1 2 3 26 26 H 1.09000 * 109.47596 * 60.00428 * 1 2 3 27 27 H 1.09006 * 109.47180 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99914 * 179.97438 * 2 1 3 29 29 H 0.96995 * 120.00250 * 354.99366 * 8 6 5 30 30 H 1.08001 * 120.59346 * 359.95319 * 10 9 8 31 31 H 0.96997 * 120.00163 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.48942 * 179.97438 * 20 11 10 33 33 H 1.08003 * 119.44202 * 180.02562 * 21 20 11 34 34 H 1.08994 * 117.49885 * 359.97438 * 23 5 3 35 35 H 1.08999 * 117.49285 * 145.02261 * 23 5 3 36 36 H 1.09010 * 117.49814 * 214.97843 * 24 5 3 37 37 H 1.08995 * 117.50491 * 359.97438 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5359 2.2155 -0.0915 5 6 3.6421 1.1694 0.1073 6 6 4.2074 0.4919 1.3289 7 8 4.8623 -0.5221 1.2115 8 7 3.9851 1.0127 2.5519 9 6 4.4183 0.3315 3.6892 10 6 4.0923 0.8195 4.9448 11 6 4.5377 0.1184 6.0818 12 6 4.2322 0.5753 7.3861 13 1 4.1691 -0.1276 8.2036 14 6 4.0113 1.9388 7.6165 15 7 3.4227 2.3290 8.7167 16 14 4.5582 3.2002 6.3518 17 1 3.4654 3.4241 5.3715 18 1 4.8798 4.4788 7.0351 19 1 5.7639 2.7005 5.6435 20 6 5.2983 -1.0541 5.8818 21 6 5.5719 -1.4609 4.5962 22 7 5.1315 -0.7769 3.5556 23 6 4.3868 2.3930 -0.4303 24 6 4.4431 1.0664 -1.1920 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9499 -0.8401 0.0004 29 1 3.5241 1.8614 2.6412 30 1 3.5075 1.7215 5.0492 31 1 3.2701 3.2735 8.8764 32 1 5.6606 -1.6228 6.7254 33 1 6.1528 -2.3571 4.4352 34 1 3.7896 3.1961 -0.8619 35 1 5.2860 2.7076 0.0995 36 1 5.3795 0.5090 -1.1632 37 1 3.8831 0.9966 -2.1245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532181150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:57 Heat of formation + Delta-G solvation = -25.059408 kcal Electronic energy + Delta-G solvation = -22695.940784 eV Core-core repulsion = 19245.469301 eV Total energy + Delta-G solvation = -3450.471483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01510 -40.82387 -39.65142 -37.16531 -36.19625 -35.72077 -35.60922 -33.25066 -30.86349 -28.67651 -27.96659 -25.98185 -24.25313 -23.60361 -23.41484 -22.14040 -20.95769 -19.70517 -19.55276 -18.05067 -17.37525 -17.30262 -17.05880 -16.61915 -16.31087 -16.10956 -15.88974 -15.64954 -15.27758 -14.89235 -14.78702 -14.33739 -14.17836 -13.90477 -13.52638 -13.19438 -12.80063 -12.72646 -12.67407 -12.63601 -12.23407 -11.89838 -11.74682 -11.61276 -11.37473 -11.22582 -10.91068 -10.27925 -10.20915 -9.74206 -9.08913 -9.02141 -6.76604 0.43764 0.71444 1.17486 1.21004 1.32377 1.43019 1.56076 1.77692 2.01820 2.03540 2.58659 2.68828 3.31194 3.47478 3.51696 3.65177 3.74091 4.01867 4.35445 4.43579 4.54640 4.55965 4.57223 4.59318 4.63412 4.71629 4.81873 4.86212 5.07961 5.08634 5.24942 5.26139 5.44340 5.64291 5.94499 6.13253 6.28056 6.32369 6.47760 6.64780 6.95951 7.01727 7.58921 8.03594 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.005093 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.882582 B = 5496.598884 C = 5905.007018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.559 3.441 4 O -0.559 6.559 5 C -0.217 4.217 6 C 0.548 3.452 7 O -0.493 6.493 8 N -0.653 5.653 9 C 0.367 3.633 10 C -0.336 4.336 11 C 0.114 3.886 12 C -0.466 4.466 13 H 0.070 0.930 14 C 0.055 3.945 15 N -0.827 5.827 16 Si 0.966 3.034 17 H -0.252 1.252 18 H -0.273 1.273 19 H -0.263 1.263 20 C -0.282 4.282 21 C 0.131 3.869 22 N -0.569 5.569 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.413 0.587 29 H 0.419 0.581 30 H 0.115 0.885 31 H 0.299 0.701 32 H 0.123 0.877 33 H 0.165 0.835 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 0.052 -17.717 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.344 3.656 4 O -0.437 6.437 5 C -0.223 4.223 6 C 0.333 3.667 7 O -0.363 6.363 8 N -0.299 5.299 9 C 0.139 3.861 10 C -0.362 4.362 11 C 0.105 3.895 12 C -0.496 4.496 13 H 0.088 0.912 14 C -0.163 4.163 15 N -0.452 5.452 16 Si 0.790 3.210 17 H -0.177 1.177 18 H -0.199 1.199 19 H -0.187 1.187 20 C -0.305 4.305 21 C -0.021 4.021 22 N -0.289 5.289 23 C -0.158 4.158 24 C -0.140 4.140 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.248 0.752 29 H 0.256 0.744 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.182 0.818 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.944 -0.113 -18.543 18.645 hybrid contribution -0.294 0.732 1.440 1.642 sum -2.238 0.619 -17.103 17.260 Atomic orbital electron populations 1.21764 0.77775 1.04485 1.02003 1.45808 1.08924 1.08482 1.73924 1.19145 0.87024 0.83932 0.75542 1.90696 1.69835 1.32416 1.50775 1.21446 0.92680 1.10913 0.97288 1.19616 0.79957 0.84238 0.82876 1.90786 1.36628 1.23554 1.85367 1.43549 1.57588 1.24555 1.04238 1.18174 0.92451 0.90628 0.84822 1.21409 1.15361 1.07689 0.91711 1.17874 0.87577 0.91659 0.92355 1.19528 1.41705 0.94157 0.94200 0.91193 1.26810 0.90798 1.01157 0.97549 1.69634 1.29001 1.20275 1.26320 0.85531 0.80579 0.76558 0.78309 1.17716 1.19940 1.18685 1.22108 1.07875 1.02387 0.98116 1.22428 0.94987 0.97309 0.87329 1.67446 1.18114 1.08863 1.34489 1.23245 1.00693 0.91213 1.00674 1.23216 1.00593 0.98806 0.91393 0.93275 0.91546 0.87379 0.75211 0.74411 0.86785 0.88958 0.85890 0.81774 0.85744 0.86811 0.86621 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.71 127.77 1.37 2.80 16 2 N -0.72 -15.55 5.69 -484.52 -2.76 -18.31 16 3 C 0.56 14.58 7.12 87.66 0.62 15.20 16 4 O -0.56 -17.44 16.52 -3.03 -0.05 -17.49 16 5 C -0.22 -5.37 2.29 -53.68 -0.12 -5.50 16 6 C 0.55 18.23 7.01 87.65 0.61 18.84 16 7 O -0.49 -19.34 14.97 -3.02 -0.05 -19.39 16 8 N -0.65 -23.88 5.39 -308.65 -1.66 -25.54 16 9 C 0.37 16.32 7.42 132.75 0.98 17.31 16 10 C -0.34 -15.88 7.18 22.98 0.17 -15.71 16 11 C 0.11 5.71 5.20 -21.11 -0.11 5.60 16 12 C -0.47 -25.01 9.65 23.52 0.23 -24.78 16 13 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 14 C 0.06 2.82 5.45 85.29 0.47 3.29 16 15 N -0.83 -42.87 13.92 21.84 0.30 -42.56 16 16 Si 0.97 41.15 24.49 68.60 1.68 42.83 16 17 H -0.25 -9.95 6.40 99.48 0.64 -9.32 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.26 -11.75 6.97 99.48 0.69 -11.06 16 20 C -0.28 -12.80 9.90 22.84 0.23 -12.58 16 21 C 0.13 5.58 11.15 84.50 0.94 6.52 16 22 N -0.57 -25.94 7.85 -193.52 -1.52 -27.46 16 23 C -0.12 -2.37 9.75 30.62 0.30 -2.07 16 24 C -0.10 -1.86 9.76 30.62 0.30 -1.56 16 25 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.41 8.04 8.83 -92.71 -0.82 7.23 16 29 H 0.42 13.61 8.70 -92.71 -0.81 12.80 16 30 H 0.11 5.22 4.20 -2.91 -0.01 5.21 16 31 H 0.30 13.84 8.29 -92.71 -0.77 13.07 16 32 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 33 H 0.17 5.73 8.06 -2.91 -0.02 5.71 16 34 H 0.12 2.27 7.86 -2.39 -0.02 2.25 16 35 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.12 2.17 8.01 -2.38 -0.02 2.15 16 37 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.77 322.69 1.36 -66.41 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.57 Total: 34.14 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.98 Total: 7.36 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -5.64 Total: -113.88 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.10 Total: -36.87 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.68 Total: 42.83 kcal Total: -67.77 1.36 -66.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532181150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.354 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds