Wall clock time and date at job start Tue Mar 31 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48496 * 109.46948 * 269.99554 * 3 2 1 5 5 H 1.48499 * 109.47008 * 29.99774 * 3 2 1 6 6 H 1.48502 * 109.46960 * 149.99593 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99893 * 170.15629 * 7 2 1 9 9 C 1.41544 * 120.00047 * 350.16358 * 7 2 1 10 10 C 1.41178 * 120.99544 * 153.72577 * 9 7 2 11 11 C 1.37585 * 119.01231 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.11109 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23336 * 359.65883 * 12 11 10 14 14 N 1.39475 * 119.58360 * 180.33761 * 13 12 11 15 15 C 1.34775 * 119.99848 * 5.65755 * 14 13 12 16 16 O 1.21276 * 120.00027 * 5.07440 * 15 14 13 17 17 C 1.50692 * 119.99819 * 185.07801 * 15 14 13 18 18 N 1.46498 * 109.47154 * 180.02562 * 17 15 14 19 19 C 1.46774 * 124.34818 * 269.72598 * 18 17 15 20 20 C 1.54653 * 105.38360 * 162.85213 * 19 18 17 21 21 C 1.54630 * 101.68525 * 25.76685 * 20 19 18 22 22 C 1.34416 * 124.35460 * 90.02150 * 18 17 15 23 23 O 1.21280 * 124.93972 * 0.43077 * 22 18 17 24 24 C 1.38601 * 120.83670 * 0.63805 * 13 12 11 25 25 H 0.96997 * 119.99660 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.49233 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.44490 * 180.02562 * 11 10 9 28 28 H 0.97002 * 120.00083 * 185.65667 * 14 13 12 29 29 H 1.09000 * 109.47675 * 299.99969 * 17 15 14 30 30 H 1.09002 * 109.47654 * 59.99742 * 17 15 14 31 31 H 1.08998 * 110.24235 * 281.98108 * 19 18 17 32 32 H 1.09002 * 110.24249 * 43.97782 * 19 18 17 33 33 H 1.08997 * 111.19317 * 267.59663 * 20 19 18 34 34 H 1.09001 * 110.82321 * 143.77310 * 20 19 18 35 35 H 1.09001 * 110.48949 * 216.30952 * 21 20 19 36 36 H 1.08999 * 110.59935 * 93.72065 * 21 20 19 37 37 H 1.08002 * 120.59791 * 179.68084 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3155 -2.4295 0.2105 10 6 1.8136 -3.6470 -0.3019 11 6 1.1073 -4.8056 -0.0740 12 7 -0.0213 -4.7931 0.6118 13 6 -0.5278 -3.6790 1.1187 14 7 -1.7203 -3.7306 1.8402 15 6 -2.2902 -4.9204 2.1157 16 8 -1.7210 -5.9490 1.8177 17 6 -3.6348 -4.9727 2.7942 18 7 -4.0331 -6.3700 2.9817 19 6 -4.8094 -7.1476 2.0085 20 6 -4.6077 -8.6271 2.4111 21 6 -4.2971 -8.5014 3.9207 22 6 -3.7395 -7.1030 4.0695 23 8 -3.1183 -6.7015 5.0306 24 6 0.1091 -2.4616 0.9359 25 1 -0.4849 0.8400 -0.0004 26 1 2.7352 -3.6687 -0.8644 27 1 1.4822 -5.7410 -0.4625 28 1 -2.1396 -2.9101 2.1436 29 1 -3.5717 -4.4800 3.7644 30 1 -4.3740 -4.4637 2.1756 31 1 -5.8640 -6.8785 2.0661 32 1 -4.4302 -6.9769 1.0009 33 1 -3.7681 -9.0702 1.8758 34 1 -5.5198 -9.2011 2.2471 35 1 -3.5554 -9.2417 4.2206 36 1 -5.2071 -8.6140 4.5101 37 1 -0.3099 -1.5548 1.3466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532433945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:39 Heat of formation + Delta-G solvation = -25.758654 kcal Electronic energy + Delta-G solvation = -22252.597759 eV Core-core repulsion = 18802.095954 eV Total energy + Delta-G solvation = -3450.501805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52809 -39.30931 -37.70105 -36.31776 -34.33657 -33.73188 -32.85860 -30.55023 -29.07157 -27.62237 -27.05705 -26.00050 -22.24363 -21.98224 -21.76158 -20.04239 -19.24606 -17.70829 -17.33858 -16.76877 -16.30941 -15.64112 -15.41721 -15.18468 -14.58720 -14.20983 -14.03320 -13.79022 -13.59228 -13.50680 -13.08541 -12.74322 -12.72232 -12.61011 -12.48384 -11.82907 -11.55554 -11.43524 -11.18650 -11.15171 -10.92285 -10.31973 -10.16922 -9.81138 -9.76854 -9.65886 -9.40513 -8.71949 -8.00162 -7.73395 -7.05951 -6.76471 -4.64564 2.52103 2.52805 2.78058 2.89817 3.00487 3.05164 3.17402 3.42516 3.72916 3.84414 4.26213 4.36438 4.67380 4.70505 4.92324 5.01427 5.10321 5.25361 5.35730 5.42615 5.58651 5.66020 5.67486 5.88613 5.95541 6.34719 6.56013 6.63562 6.78381 6.93737 7.06592 7.11250 7.36668 7.44748 7.75406 7.92470 8.15988 8.19809 8.41001 8.68288 8.73851 8.85403 9.66239 10.07841 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.003466 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.282899 B = 8077.386447 C = 8483.065148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.142 3.858 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.554 5.554 13 C 0.335 3.665 14 N -0.658 5.658 15 C 0.480 3.520 16 O -0.472 6.472 17 C 0.107 3.893 18 N -0.602 5.602 19 C 0.104 3.896 20 C -0.129 4.129 21 C -0.152 4.152 22 C 0.522 3.478 23 O -0.532 6.532 24 C -0.238 4.238 25 H 0.281 0.719 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.408 0.592 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 -7.271 3.166 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.273 5.273 13 C 0.111 3.889 14 N -0.305 5.305 15 C 0.262 3.738 16 O -0.341 6.341 17 C -0.020 4.020 18 N -0.335 5.335 19 C -0.018 4.018 20 C -0.167 4.167 21 C -0.192 4.192 22 C 0.310 3.690 23 O -0.408 6.408 24 C -0.263 4.263 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.243 0.757 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.306 -8.431 3.603 15.346 hybrid contribution 0.617 2.169 -0.234 2.267 sum -11.689 -6.263 3.368 13.682 Atomic orbital electron populations 1.69737 1.07577 1.29180 1.35703 1.25950 0.94890 1.01455 0.91969 0.86201 0.80469 0.80135 0.79288 1.19399 1.20040 1.18428 1.19584 0.95849 0.90014 1.43106 0.90058 1.17587 0.90358 0.92275 0.86442 1.21929 1.04126 0.94418 1.10106 1.21741 0.90619 0.96515 0.94847 1.67162 1.15059 1.28091 1.17009 1.18201 0.86573 0.90921 0.93232 1.43423 1.23569 1.08899 1.54588 1.21119 0.87704 0.84424 0.80529 1.90769 1.62395 1.32614 1.48357 1.21224 0.94895 0.82883 1.02980 1.47768 1.54378 1.11605 1.19796 1.22133 0.95238 0.90881 0.93589 1.22602 1.03465 0.95746 0.94917 1.22286 1.03279 0.95529 0.98108 1.20908 0.78419 0.87934 0.81774 1.90726 1.40458 1.76394 1.33245 1.21675 1.00926 0.95547 1.08168 0.90819 0.87954 0.85938 0.75684 0.87296 0.87402 0.90969 0.90029 0.89581 0.89298 0.88043 0.87984 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.41 10.70 55.55 0.59 -18.81 16 2 C 0.08 1.81 5.31 -17.34 -0.09 1.72 16 3 Si 0.91 17.94 29.57 -169.99 -5.03 12.92 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.70 9.14 -37.65 -0.34 -12.04 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.75 5.60 -106.55 -0.60 3.15 16 10 C -0.28 -6.98 9.90 -38.70 -0.38 -7.36 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 12 N -0.55 -14.30 7.89 -12.52 -0.10 -14.40 16 13 C 0.34 8.20 7.40 -154.70 -1.15 7.06 16 14 N -0.66 -12.88 5.39 -11.49 -0.06 -12.94 16 15 C 0.48 9.08 7.85 -10.99 -0.09 8.99 16 16 O -0.47 -10.98 14.72 5.56 0.08 -10.90 16 17 C 0.11 1.42 6.42 -5.20 -0.03 1.38 16 18 N -0.60 -7.98 2.42 -173.67 -0.42 -8.40 16 19 C 0.10 0.99 7.36 -3.02 -0.02 0.97 16 20 C -0.13 -1.04 7.19 -25.00 -0.18 -1.22 16 21 C -0.15 -1.48 6.86 -26.74 -0.18 -1.66 16 22 C 0.52 7.74 8.02 -10.86 -0.09 7.65 16 23 O -0.53 -10.23 17.59 5.56 0.10 -10.13 16 24 C -0.24 -6.05 8.61 -38.48 -0.33 -6.38 16 25 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 26 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 27 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.41 6.43 8.70 -40.82 -0.36 6.08 16 29 H 0.11 1.36 7.92 -51.93 -0.41 0.95 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.13 3.35 6.11 -52.49 -0.32 3.03 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -35.24 322.40 -8.10 -43.33 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.44 Total: 9.57 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -3.68 Total: 4.90 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.01 Total: -54.55 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.18 Total: -21.03 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.24 -8.10 -43.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532433945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.576 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds