Wall clock time and date at job start Tue Mar 31 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48496 * 109.46948 * 269.99554 * 3 2 1 5 5 H 1.48499 * 109.47008 * 29.99774 * 3 2 1 6 6 H 1.48502 * 109.46960 * 149.99593 * 3 2 1 7 7 C 1.40038 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99893 * 170.15629 * 7 2 1 9 9 C 1.41544 * 120.00047 * 350.16358 * 7 2 1 10 10 C 1.41178 * 120.99544 * 153.72577 * 9 7 2 11 11 C 1.37585 * 119.01231 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.11109 * 0.02562 * 11 10 9 13 13 C 1.32467 * 122.23336 * 359.65883 * 12 11 10 14 14 N 1.39475 * 119.58360 * 180.33761 * 13 12 11 15 15 C 1.34775 * 119.99848 * 5.65755 * 14 13 12 16 16 O 1.21276 * 120.00027 * 5.07440 * 15 14 13 17 17 C 1.50692 * 119.99819 * 185.07801 * 15 14 13 18 18 N 1.46498 * 109.47154 * 180.02562 * 17 15 14 19 19 C 1.46774 * 124.34818 * 269.72598 * 18 17 15 20 20 C 1.54653 * 105.38360 * 162.85213 * 19 18 17 21 21 C 1.54630 * 101.68525 * 25.76685 * 20 19 18 22 22 C 1.34416 * 124.35460 * 90.02150 * 18 17 15 23 23 O 1.21280 * 124.93972 * 0.43077 * 22 18 17 24 24 C 1.38601 * 120.83670 * 0.63805 * 13 12 11 25 25 H 0.96997 * 119.99660 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.49233 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.44490 * 180.02562 * 11 10 9 28 28 H 0.97002 * 120.00083 * 185.65667 * 14 13 12 29 29 H 1.09000 * 109.47675 * 299.99969 * 17 15 14 30 30 H 1.09002 * 109.47654 * 59.99742 * 17 15 14 31 31 H 1.08998 * 110.24235 * 281.98108 * 19 18 17 32 32 H 1.09002 * 110.24249 * 43.97782 * 19 18 17 33 33 H 1.08997 * 111.19317 * 267.59663 * 20 19 18 34 34 H 1.09001 * 110.82321 * 143.77310 * 20 19 18 35 35 H 1.09001 * 110.48949 * 216.30952 * 21 20 19 36 36 H 1.08999 * 110.59935 * 93.72065 * 21 20 19 37 37 H 1.08002 * 120.59791 * 179.68084 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0076 -1.2128 0.0005 8 1 3.0756 -1.2197 -0.1594 9 6 1.3155 -2.4295 0.2105 10 6 1.8136 -3.6470 -0.3019 11 6 1.1073 -4.8056 -0.0740 12 7 -0.0213 -4.7931 0.6118 13 6 -0.5278 -3.6790 1.1187 14 7 -1.7203 -3.7306 1.8402 15 6 -2.2902 -4.9204 2.1157 16 8 -1.7210 -5.9490 1.8177 17 6 -3.6348 -4.9727 2.7942 18 7 -4.0331 -6.3700 2.9817 19 6 -4.8094 -7.1476 2.0085 20 6 -4.6077 -8.6271 2.4111 21 6 -4.2971 -8.5014 3.9207 22 6 -3.7395 -7.1030 4.0695 23 8 -3.1183 -6.7015 5.0306 24 6 0.1091 -2.4616 0.9359 25 1 -0.4849 0.8400 -0.0004 26 1 2.7352 -3.6687 -0.8644 27 1 1.4822 -5.7410 -0.4625 28 1 -2.1396 -2.9101 2.1436 29 1 -3.5717 -4.4800 3.7644 30 1 -4.3740 -4.4637 2.1756 31 1 -5.8640 -6.8785 2.0661 32 1 -4.4302 -6.9769 1.0009 33 1 -3.7681 -9.0702 1.8758 34 1 -5.5198 -9.2011 2.2471 35 1 -3.5554 -9.2417 4.2206 36 1 -5.2071 -8.6140 4.5101 37 1 -0.3099 -1.5548 1.3466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532433945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:39 Heat of formation + Delta-G solvation = -49.531829 kcal Electronic energy + Delta-G solvation = -22253.628641 eV Core-core repulsion = 18802.095954 eV Total energy + Delta-G solvation = -3451.532687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70403 -40.87113 -39.43060 -37.43017 -36.13867 -35.49916 -33.84725 -32.46226 -30.74407 -28.46107 -28.33100 -27.90521 -23.91479 -23.60900 -22.76432 -21.64513 -20.44374 -19.49427 -18.73815 -17.98574 -17.40878 -17.25039 -16.89515 -16.55815 -16.08670 -16.00451 -15.70316 -15.12724 -14.75030 -14.68147 -14.54360 -14.39059 -14.27190 -13.80423 -13.38005 -13.22429 -12.99117 -12.87139 -12.71037 -12.29519 -12.13056 -11.92342 -11.88979 -11.52068 -11.22423 -11.18024 -10.92703 -10.00423 -9.89293 -9.53596 -8.90672 -8.59935 -6.59966 0.70195 0.98120 1.39358 1.40886 1.51294 1.55399 1.82066 1.89632 2.19881 2.32842 2.80851 3.42344 3.59314 3.64915 3.71707 4.06943 4.15188 4.18524 4.23057 4.28579 4.65771 4.71588 4.72035 4.82511 4.88406 4.89175 5.07027 5.07774 5.22464 5.24536 5.40314 5.45313 5.61164 5.90368 6.07332 6.12062 6.44695 6.56645 6.76968 6.81992 7.07514 7.25807 7.79796 8.27728 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.003466 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.282899 B = 8077.386447 C = 8483.065148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.484 4.484 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.297 4.297 11 C 0.111 3.889 12 N -0.579 5.579 13 C 0.331 3.669 14 N -0.651 5.651 15 C 0.474 3.526 16 O -0.520 6.520 17 C 0.114 3.886 18 N -0.606 5.606 19 C 0.097 3.903 20 C -0.120 4.120 21 C -0.144 4.144 22 C 0.503 3.497 23 O -0.590 6.590 24 C -0.256 4.256 25 H 0.292 0.708 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.425 0.575 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 -6.827 2.983 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.320 4.320 11 C -0.043 4.043 12 N -0.299 5.299 13 C 0.105 3.895 14 N -0.300 5.300 15 C 0.260 3.740 16 O -0.392 6.392 17 C -0.012 4.012 18 N -0.338 5.338 19 C -0.024 4.024 20 C -0.158 4.158 21 C -0.184 4.184 22 C 0.293 3.707 23 O -0.471 6.471 24 C -0.281 4.281 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.166 0.834 28 H 0.263 0.737 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.117 0.883 36 H 0.152 0.848 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.287 -7.994 3.397 16.720 hybrid contribution 1.180 2.012 -0.212 2.342 sum -13.107 -5.982 3.186 14.755 Atomic orbital electron populations 1.69765 1.08838 1.30849 1.34664 1.26814 0.95751 1.04490 0.90883 0.85078 0.78926 0.75444 0.79517 1.18706 1.18712 1.18473 1.19877 0.96184 0.90979 1.44484 0.89947 1.18026 0.91215 0.93304 0.87046 1.22115 1.04910 0.94291 1.10726 1.22190 0.90309 0.97509 0.94292 1.67294 1.15864 1.28711 1.18012 1.18484 0.87753 0.90361 0.92902 1.43480 1.22244 1.10413 1.53829 1.22225 0.89141 0.83206 0.79421 1.90739 1.64055 1.34061 1.50392 1.21324 0.92336 0.84089 1.03468 1.48077 1.53826 1.11713 1.20149 1.22469 0.96655 0.91293 0.91974 1.22653 1.04787 0.95276 0.93073 1.22351 1.04215 0.91925 0.99900 1.21904 0.77629 0.89915 0.81279 1.90682 1.43095 1.77823 1.35466 1.21667 1.01440 0.95844 1.09176 0.89682 0.86587 0.83418 0.73742 0.86425 0.82804 0.87006 0.91255 0.91296 0.85128 0.88293 0.84801 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.60 10.70 21.84 0.23 -39.36 16 2 C 0.04 1.77 5.31 85.29 0.45 2.22 16 3 Si 0.99 36.05 29.57 68.60 2.03 38.08 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.48 -25.34 9.14 23.52 0.21 -25.12 16 8 H 0.08 4.13 7.87 -2.91 -0.02 4.11 16 9 C 0.11 6.09 5.60 -21.11 -0.12 5.98 16 10 C -0.30 -15.04 9.90 22.84 0.23 -14.81 16 11 C 0.11 5.49 11.15 84.50 0.94 6.43 16 12 N -0.58 -30.54 7.89 -193.53 -1.53 -32.07 16 13 C 0.33 16.54 7.40 132.75 0.98 17.52 16 14 N -0.65 -25.67 5.39 -308.66 -1.66 -27.33 16 15 C 0.47 17.96 7.85 87.65 0.69 18.65 16 16 O -0.52 -24.66 14.72 -3.02 -0.04 -24.70 16 17 C 0.11 2.86 6.42 85.63 0.55 3.41 16 18 N -0.61 -15.08 2.42 -821.97 -1.99 -17.07 16 19 C 0.10 1.57 7.36 86.89 0.64 2.21 16 20 C -0.12 -1.59 7.19 31.71 0.23 -1.37 16 21 C -0.14 -2.51 6.86 30.59 0.21 -2.30 16 22 C 0.50 14.59 8.02 87.90 0.70 15.29 16 23 O -0.59 -23.15 17.59 -3.03 -0.05 -23.21 16 24 C -0.26 -13.37 8.61 22.98 0.20 -13.17 16 25 H 0.29 12.62 8.29 -92.71 -0.77 11.85 16 26 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 27 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 28 H 0.42 13.28 8.70 -92.71 -0.81 12.48 16 29 H 0.12 2.80 7.92 -2.39 -0.02 2.78 16 30 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.13 6.71 6.11 -2.91 -0.02 6.70 16 Total: -1.00 -80.24 322.40 3.21 -77.04 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.30 Total: 33.69 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 5.92 Total: 14.94 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.95 Total: -115.84 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.10 Total: -47.91 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -80.24 3.21 -77.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532433945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.504 kcal (2) G-P(sol) polarization free energy of solvation -80.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds