Wall clock time and date at job start Tue Mar 31 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48140 * 111.00002 * 2 1 4 4 C 1.54795 * 101.87917 * 264.52582 * 3 2 1 5 5 H 1.08997 * 110.85083 * 94.17900 * 4 3 2 6 6 N 1.46496 * 111.02816 * 217.73526 * 4 3 2 7 7 C 1.34773 * 119.99897 * 199.36310 * 6 4 3 8 8 O 1.21551 * 120.00482 * 359.97438 * 7 6 4 9 9 C 1.47886 * 119.99800 * 179.97438 * 7 6 4 10 10 C 1.39917 * 120.02786 * 359.72597 * 9 7 6 11 11 C 1.38326 * 120.35935 * 179.78910 * 10 9 7 12 12 C 1.37759 * 120.41078 * 0.46487 * 11 10 9 13 13 C 1.40743 * 120.04034 * 359.79121 * 12 11 10 14 14 C 1.41440 * 120.17879 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99558 * 24.46472 * 14 13 12 16 16 C 1.39936 * 120.00010 * 204.46572 * 14 13 12 17 17 N 1.30826 * 119.99660 * 17.88258 * 16 14 13 18 18 Si 1.86798 * 119.99822 * 197.88145 * 16 14 13 19 19 H 1.48504 * 109.47255 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47144 * 119.99987 * 18 16 14 21 21 H 1.48503 * 109.47012 * 240.00119 * 18 16 14 22 22 C 1.39000 * 120.02338 * 179.97438 * 9 7 6 23 23 C 1.51810 * 102.22827 * 336.00236 * 4 3 2 24 24 O 1.21289 * 126.03557 * 194.82596 * 23 4 3 25 25 N 1.34589 * 107.92697 * 15.08248 * 23 4 3 26 26 H 1.08999 * 109.47309 * 60.00265 * 1 2 3 27 27 H 1.09006 * 109.46913 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47436 * 299.99482 * 1 2 3 29 29 H 1.08996 * 110.95058 * 146.37851 * 3 2 1 30 30 H 1.09001 * 110.97867 * 22.68315 * 3 2 1 31 31 H 0.96999 * 119.99852 * 19.36230 * 6 4 3 32 32 H 1.07999 * 119.81928 * 359.97438 * 10 9 7 33 33 H 1.08002 * 119.79568 * 180.21291 * 11 10 9 34 34 H 1.08005 * 119.97623 * 179.77199 * 12 11 10 35 35 H 0.97003 * 119.99230 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.20515 * 359.95924 * 22 9 7 37 37 H 0.96997 * 123.52880 * 181.32987 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3830 0.0000 4 6 2.2489 1.6287 -1.5079 5 1 1.3920 2.1210 -1.9675 6 7 3.4707 2.4092 -1.7185 7 6 3.6638 3.0571 -2.8844 8 8 2.8245 2.9936 -3.7614 9 6 4.8968 3.8454 -3.0968 10 6 5.8607 3.9237 -2.0856 11 6 7.0186 4.6555 -2.2786 12 6 7.2319 5.3234 -3.4644 13 6 6.2712 5.2607 -4.4910 14 6 6.4870 5.9458 -5.7095 15 1 7.4926 6.1777 -6.0278 16 6 5.3974 6.3232 -6.5024 17 7 4.1966 6.3686 -5.9852 18 14 5.6577 6.7621 -8.2994 19 1 7.0981 6.6330 -8.6369 20 1 4.8643 5.8423 -9.1536 21 1 5.2179 8.1606 -8.5360 22 6 5.0967 4.5134 -4.2993 23 6 2.4110 0.2167 -2.0413 24 8 2.8683 -0.0897 -3.1221 25 7 1.9522 -0.6349 -1.1054 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 2.9308 1.4431 0.5636 30 1 1.2630 2.0839 0.3925 31 1 4.1406 2.4596 -1.0189 32 1 5.7012 3.4074 -1.1505 33 1 7.7581 4.7069 -1.4932 34 1 8.1368 5.8958 -3.6061 35 1 3.4415 6.6305 -6.5348 36 1 4.3539 4.4586 -5.0813 37 1 1.9666 -1.5996 -1.2056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539780764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:01 Heat of formation + Delta-G solvation = -2.252030 kcal Electronic energy + Delta-G solvation = -22431.438649 eV Core-core repulsion = 18981.956169 eV Total energy + Delta-G solvation = -3449.482481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35979 -38.99959 -37.44170 -36.97943 -34.41588 -33.69897 -31.52819 -30.71744 -29.48455 -29.15855 -25.91771 -25.25540 -23.12828 -22.65820 -21.06902 -20.71441 -19.66390 -18.07379 -17.58522 -16.93581 -16.40128 -15.81048 -15.35730 -15.05396 -14.68933 -14.45781 -14.24093 -14.00437 -13.69183 -13.39546 -13.32274 -13.10069 -12.69234 -12.50412 -12.35178 -12.06433 -11.66055 -11.17060 -11.08066 -10.75788 -10.66815 -10.47992 -10.22750 -10.03750 -9.69474 -9.21886 -9.09294 -8.88526 -8.52484 -7.64327 -7.52370 -6.80487 -4.41159 2.17004 2.33736 2.57545 2.81037 3.08950 3.14057 3.15645 3.40586 3.73965 3.92520 4.01423 4.17826 4.31386 4.65376 4.70433 5.00659 5.08945 5.22552 5.38301 5.43653 5.60824 5.75099 5.90739 6.06378 6.25429 6.60084 6.70839 6.73189 6.97588 7.00356 7.20752 7.34115 7.37455 7.67009 7.72367 7.90170 8.01685 8.09871 8.17699 8.50199 8.79858 8.82959 8.88181 10.14386 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.003923 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.658979 B = 7136.190750 C = 7774.344539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.288 5.288 3 C 0.026 3.974 4 C 0.090 3.910 5 H 0.123 0.877 6 N -0.717 5.717 7 C 0.569 3.431 8 O -0.531 6.531 9 C -0.125 4.125 10 C -0.219 4.219 11 C -0.097 4.097 12 C -0.212 4.212 13 C 0.099 3.901 14 C -0.459 4.459 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.783 5.783 18 Si 0.910 3.090 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.274 1.274 22 C -0.090 4.090 23 C 0.488 3.512 24 O -0.490 6.490 25 N -0.582 5.582 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.405 0.595 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.284 0.716 36 H 0.134 0.866 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 -8.385 12.796 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 N -0.106 5.106 3 C -0.102 4.102 4 C -0.021 4.021 5 H 0.140 0.860 6 N -0.373 5.373 7 C 0.360 3.640 8 O -0.407 6.407 9 C -0.129 4.129 10 C -0.239 4.239 11 C -0.115 4.115 12 C -0.232 4.232 13 C 0.096 3.904 14 C -0.487 4.487 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.199 1.199 22 C -0.110 4.110 23 C 0.270 3.730 24 O -0.358 6.358 25 N -0.334 5.334 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.242 0.758 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.152 0.848 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.984 -8.670 11.891 16.289 hybrid contribution -0.129 0.253 -0.979 1.020 sum -7.113 -8.417 10.912 15.508 Atomic orbital electron populations 1.23274 0.87480 1.03555 1.02330 1.64928 1.08125 1.14611 1.22964 1.23881 1.03575 0.88338 0.94436 1.21974 0.92500 0.90956 0.96687 0.85963 1.45614 1.20699 1.51747 1.19272 1.18908 0.87112 0.77598 0.80369 1.90717 1.45501 1.62199 1.42280 1.19377 0.93636 1.02345 0.97516 1.20311 0.96935 1.08570 0.98064 1.20427 0.96202 0.98057 0.96799 1.21103 1.01727 1.06126 0.94213 1.17600 0.90739 0.89839 0.92195 1.19630 0.94164 1.31984 1.02969 0.89980 1.25971 0.94552 0.93343 1.00737 1.69796 1.00423 1.33056 1.37445 0.86233 0.79951 0.78592 0.81835 1.18302 1.19529 1.19909 1.21645 0.99116 0.94737 0.95509 1.22008 0.77774 0.89234 0.83969 1.90828 1.43156 1.81887 1.19936 1.45911 1.63303 1.09105 1.15072 0.94084 0.90304 0.89285 0.87207 0.87475 0.75820 0.89271 0.88831 0.88566 0.90488 0.84823 0.72879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.11 9.72 60.06 0.58 0.47 16 2 N -0.29 -2.48 5.89 -119.14 -0.70 -3.19 16 3 C 0.03 0.22 6.87 -2.19 -0.02 0.20 16 4 C 0.09 1.25 3.33 -67.59 -0.23 1.02 16 5 H 0.12 1.81 7.71 -51.93 -0.40 1.41 16 6 N -0.72 -11.81 5.15 -54.41 -0.28 -12.09 16 7 C 0.57 12.74 7.77 -12.31 -0.10 12.65 16 8 O -0.53 -13.79 16.07 5.32 0.09 -13.70 16 9 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 10 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 11 C -0.10 -2.06 10.01 -39.72 -0.40 -2.45 16 12 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 13 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 14 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 15 H 0.08 2.07 7.91 -52.49 -0.42 1.65 16 16 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 17 N -0.78 -20.91 10.96 55.55 0.61 -20.30 16 18 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 C -0.09 -2.44 8.24 -38.44 -0.32 -2.76 16 23 C 0.49 7.60 8.28 -10.52 -0.09 7.52 16 24 O -0.49 -10.23 18.03 5.55 0.10 -10.13 16 25 N -0.58 -6.29 5.95 31.48 0.19 -6.11 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.11 0.82 7.81 -51.93 -0.41 0.42 16 30 H 0.11 0.66 7.77 -51.93 -0.40 0.26 16 31 H 0.40 5.55 6.42 -40.82 -0.26 5.29 16 32 H 0.09 1.51 6.38 -52.49 -0.33 1.17 16 33 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 35 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 36 H 0.13 3.95 5.74 -52.49 -0.30 3.65 16 37 H 0.43 3.83 8.96 -185.35 -1.66 2.17 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -34.03 319.65 -8.59 -42.62 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.43 Total: 10.13 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.95 Total: -6.05 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.19 Total: -41.69 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.19 Total: -23.83 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.03 -8.59 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539780764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.366 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds