Wall clock time and date at job start Tue Mar 31 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86800 * 119.99699 * 2 1 4 4 H 1.48498 * 109.46814 * 239.99919 * 3 2 1 5 5 H 1.48497 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47099 * 120.00140 * 3 2 1 7 7 C 1.40030 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00037 * 189.77329 * 7 2 1 9 9 C 1.41546 * 120.00152 * 9.49389 * 7 2 1 10 10 C 1.41174 * 120.99140 * 28.53968 * 9 7 2 11 11 C 1.37592 * 119.01185 * 179.97438 * 10 9 7 12 12 N 1.32081 * 121.10968 * 359.97438 * 11 10 9 13 13 C 1.32469 * 122.23152 * 0.03044 * 12 11 10 14 14 N 1.39470 * 119.58043 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99522 * 5.08292 * 14 13 12 16 16 O 1.21275 * 120.00689 * 354.98216 * 15 14 13 17 17 C 1.50706 * 119.99383 * 174.97855 * 15 14 13 18 18 H 1.08996 * 109.30207 * 320.00254 * 17 15 14 19 19 C 1.52920 * 109.30138 * 79.59023 * 17 15 14 20 20 C 1.53343 * 108.67579 * 171.06235 * 19 17 15 21 21 C 1.53070 * 108.42464 * 292.46599 * 20 19 17 22 22 C 1.50178 * 109.88976 * 48.90153 * 21 20 19 23 23 O 1.21280 * 118.24003 * 162.44159 * 22 21 20 24 24 N 1.33088 * 123.42893 * 342.22760 * 22 21 20 25 25 C 1.38591 * 120.83967 * 359.73062 * 13 12 11 26 26 H 0.97002 * 120.00503 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.49964 * 359.95916 * 10 9 7 28 28 H 1.08008 * 119.44419 * 180.02562 * 11 10 9 29 29 H 0.96998 * 120.00036 * 185.08499 * 14 13 12 30 30 H 1.09003 * 109.59781 * 290.81606 * 19 17 15 31 31 H 1.09002 * 109.60326 * 51.13816 * 19 17 15 32 32 H 1.09002 * 109.67414 * 52.20322 * 20 19 17 33 33 H 1.09002 * 109.67209 * 172.69802 * 20 19 17 34 34 H 1.09001 * 109.39904 * 169.03153 * 21 20 19 35 35 H 1.08998 * 109.39710 * 288.85604 * 21 20 19 36 36 H 0.96993 * 117.74616 * 182.38507 * 24 22 21 37 37 H 1.08004 * 120.60275 * 180.26809 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0758 -1.2195 0.1582 9 6 1.3144 -2.4300 -0.2033 10 6 0.1266 -2.4721 -0.9651 11 6 -0.5138 -3.6777 -1.1367 12 7 -0.0351 -4.7868 -0.6026 13 6 1.0750 -4.8010 0.1202 14 7 1.5311 -6.0043 0.6580 15 6 0.9025 -7.1580 0.3572 16 8 -0.1125 -7.1405 -0.3063 17 6 1.4610 -8.4698 0.8454 18 1 2.5475 -8.4527 0.7604 19 6 1.0717 -8.6710 2.3105 20 6 1.4490 -10.0977 2.7273 21 6 0.5513 -11.0771 1.9672 22 6 0.5429 -10.7334 0.5053 23 8 0.1589 -11.5743 -0.2797 24 7 0.9307 -9.5534 0.0273 25 6 1.7921 -3.6363 0.3438 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2736 -1.5713 -1.4065 28 1 -1.4228 -3.7180 -1.7185 29 1 2.3006 -6.0109 1.2484 30 1 1.6076 -7.9544 2.9329 31 1 -0.0022 -8.5253 2.4268 32 1 2.4931 -10.2885 2.4792 33 1 1.2988 -10.2183 3.8002 34 1 0.9290 -12.0911 2.0986 35 1 -0.4643 -11.0156 2.3583 36 1 0.8582 -9.4076 -0.9288 37 1 2.6990 -3.6530 0.9302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554619379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:14 Heat of formation + Delta-G solvation = -40.844768 kcal Electronic energy + Delta-G solvation = -22122.528228 eV Core-core repulsion = 18671.372240 eV Total energy + Delta-G solvation = -3451.155988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80732 -39.44049 -37.96718 -36.27310 -34.62747 -33.69271 -33.15600 -30.75338 -30.37789 -28.45318 -26.08192 -25.44391 -23.03419 -22.11712 -21.82282 -19.94614 -19.33822 -18.17878 -17.46527 -16.98486 -16.36258 -15.76975 -15.35681 -15.13705 -14.82520 -14.33181 -14.26593 -14.09892 -13.97435 -13.77974 -13.59123 -13.02542 -12.49310 -12.40939 -12.20722 -11.73878 -11.47288 -11.37929 -11.31899 -11.28989 -11.04652 -10.46511 -10.19347 -9.99100 -9.88494 -9.65728 -9.46022 -9.11609 -8.08987 -7.83254 -7.14162 -6.83942 -4.69960 2.36420 2.51798 2.70325 2.94077 2.98413 3.00523 3.09254 3.33127 3.45693 3.81216 4.31927 4.40349 4.43808 4.49984 4.62876 4.83290 4.94506 5.13702 5.40203 5.43651 5.52753 5.54343 5.59162 5.83852 5.88788 6.44020 6.46202 6.64003 6.69103 6.83939 7.05710 7.20659 7.30219 7.38413 7.63175 7.81111 8.07289 8.10952 8.36515 8.52523 8.67640 8.70972 9.57605 10.05085 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.041285 B = 0.003125 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.054858 B = 8957.984045 C = 9353.298343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.216 4.216 11 C 0.102 3.898 12 N -0.552 5.552 13 C 0.344 3.656 14 N -0.655 5.655 15 C 0.486 3.514 16 O -0.464 6.464 17 C 0.125 3.875 18 H 0.098 0.902 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.137 4.137 22 C 0.524 3.476 23 O -0.560 6.560 24 N -0.696 5.696 25 C -0.299 4.299 26 H 0.284 0.716 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.407 0.593 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.405 0.595 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -10.977 7.085 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.138 3.862 10 C -0.239 4.239 11 C -0.049 4.049 12 N -0.271 5.271 13 C 0.116 3.884 14 N -0.302 5.302 15 C 0.268 3.732 16 O -0.333 6.333 17 C 0.015 3.985 18 H 0.116 0.884 19 C -0.168 4.168 20 C -0.158 4.158 21 C -0.177 4.177 22 C 0.311 3.689 23 O -0.438 6.438 24 N -0.349 5.349 25 C -0.325 4.325 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.242 0.758 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.242 0.758 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.142 -12.143 6.280 14.284 hybrid contribution 1.183 1.905 0.203 2.252 sum 5.324 -10.237 6.483 13.236 Atomic orbital electron populations 1.69734 1.07584 1.29629 1.34799 1.25952 0.94878 1.01483 0.91996 0.86236 0.79961 0.79753 0.80020 1.18738 1.20197 1.18902 1.19525 0.95742 0.89979 1.43663 0.90125 1.17591 0.90716 0.91492 0.86409 1.22280 0.99896 0.97944 1.03816 1.21922 0.97917 0.88048 0.97035 1.67200 1.13404 1.30530 1.16011 1.17987 0.92228 0.83574 0.94571 1.43376 1.32752 1.05269 1.48755 1.20726 0.85399 0.85015 0.82057 1.90848 1.21416 1.85985 1.35015 1.20938 0.99015 0.85953 0.92545 0.88449 1.21885 1.03859 0.98410 0.92629 1.21662 0.99980 0.93267 1.00915 1.21688 1.03055 1.01577 0.91390 1.20051 0.76075 0.81205 0.91575 1.90766 1.47830 1.46790 1.58457 1.45171 1.64679 1.12993 1.12020 1.21236 1.05140 0.92787 1.13287 0.90520 0.85321 0.85808 0.75781 0.88887 0.89948 0.90707 0.89888 0.88045 0.88050 0.75766 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.48 10.83 55.55 0.60 -18.88 16 2 C 0.08 1.80 5.31 -17.34 -0.09 1.70 16 3 Si 0.92 17.58 29.57 -169.99 -5.03 12.55 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.46 -11.38 9.12 -37.65 -0.34 -11.72 16 8 H 0.08 1.89 7.87 -52.49 -0.41 1.48 16 9 C 0.15 3.71 5.58 -106.55 -0.59 3.11 16 10 C -0.22 -5.47 8.75 -38.70 -0.34 -5.80 16 11 C 0.10 2.47 11.15 -17.68 -0.20 2.28 16 12 N -0.55 -13.57 7.85 -12.52 -0.10 -13.66 16 13 C 0.34 7.58 7.42 -154.70 -1.15 6.43 16 14 N -0.65 -10.68 5.39 -11.49 -0.06 -10.74 16 15 C 0.49 7.80 6.94 -10.98 -0.08 7.73 16 16 O -0.46 -9.85 14.64 5.56 0.08 -9.77 16 17 C 0.13 1.34 3.47 -69.52 -0.24 1.10 16 18 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.13 -1.07 5.28 -26.59 -0.14 -1.21 16 20 C -0.12 -0.76 6.03 -26.52 -0.16 -0.92 16 21 C -0.14 -1.17 6.03 -28.10 -0.17 -1.34 16 22 C 0.52 6.81 7.71 -11.99 -0.09 6.72 16 23 O -0.56 -9.61 17.78 5.56 0.10 -9.52 16 24 N -0.70 -8.80 4.77 -56.04 -0.27 -9.07 16 25 C -0.30 -6.78 9.73 -38.48 -0.37 -7.15 16 26 H 0.28 6.36 8.29 -40.82 -0.34 6.03 16 27 H 0.13 3.31 6.27 -52.49 -0.33 2.98 16 28 H 0.12 2.72 8.06 -52.48 -0.42 2.30 16 29 H 0.41 4.80 8.70 -40.82 -0.36 4.44 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 5.68 8.44 -40.82 -0.34 5.34 16 37 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -33.41 317.31 -8.24 -41.65 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.38 Total: 11.73 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.97 Total: 0.92 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.17 Total: -52.35 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.41 -8.24 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554619379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.805 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds