Wall clock time and date at job start Tue Mar 31 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34424 * 124.34755 * 2 1 4 4 O 1.21279 * 124.94194 * 0.40294 * 3 2 1 5 5 C 1.51282 * 110.11009 * 180.43071 * 3 2 1 6 6 C 1.54855 * 104.21386 * 16.26473 * 5 3 2 7 7 C 1.46762 * 124.34987 * 180.02562 * 2 1 3 8 8 H 1.09000 * 110.24118 * 43.87960 * 7 2 1 9 9 C 1.50694 * 110.24844 * 281.96355 * 7 2 1 10 10 O 1.21282 * 120.00078 * 342.62811 * 9 7 2 11 11 N 1.34778 * 119.99986 * 162.62712 * 9 7 2 12 12 C 1.39473 * 119.99740 * 175.17968 * 11 9 7 13 13 C 1.38599 * 119.57643 * 184.97425 * 12 11 9 14 14 C 1.40818 * 118.79399 * 180.20156 * 13 12 11 15 15 C 1.41537 * 120.99370 * 179.79966 * 14 13 12 16 16 H 1.08000 * 119.99741 * 156.34274 * 15 14 13 17 17 C 1.40025 * 120.00549 * 336.34144 * 15 14 13 18 18 N 1.30748 * 119.99870 * 342.79349 * 17 15 14 19 19 Si 1.86804 * 120.00485 * 162.79285 * 17 15 14 20 20 H 1.48496 * 109.46834 * 90.00088 * 19 17 15 21 21 H 1.48502 * 109.47078 * 210.00140 * 19 17 15 22 22 H 1.48497 * 109.46897 * 330.00245 * 19 17 15 23 23 C 1.41174 * 118.00446 * 359.52948 * 14 13 12 24 24 C 1.37587 * 119.01612 * 0.24626 * 23 14 13 25 25 N 1.32084 * 121.11245 * 359.97438 * 24 23 14 26 26 H 1.09000 * 109.46804 * 269.97639 * 1 2 3 27 27 H 1.08995 * 109.46968 * 29.97176 * 1 2 3 28 28 H 1.08991 * 109.47028 * 149.97685 * 1 2 3 29 29 H 1.09007 * 110.48581 * 134.93161 * 5 3 2 30 30 H 1.09005 * 110.48325 * 257.43565 * 5 3 2 31 31 H 1.09004 * 111.03986 * 217.10147 * 6 5 3 32 32 H 1.08994 * 110.99612 * 93.26211 * 6 5 3 33 33 H 0.97002 * 120.00158 * 355.18190 * 11 9 7 34 34 H 1.08004 * 120.60358 * 359.97438 * 13 12 11 35 35 H 0.97004 * 120.00406 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.48958 * 180.23008 * 23 14 13 37 37 H 1.07997 * 119.44331 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2443 0.0070 5 6 3.6898 0.7378 -0.0107 6 6 3.7013 -0.7507 -0.4375 7 6 2.2931 -1.2117 -0.0005 8 1 1.8973 -1.9386 -0.7097 9 6 2.3455 -1.8082 1.3823 10 8 2.0298 -1.1395 2.3436 11 7 2.7431 -3.0850 1.5508 12 6 2.8881 -3.6062 2.8363 13 6 3.3959 -4.8851 3.0027 14 6 3.5313 -5.3966 4.3077 15 6 4.0406 -6.6981 4.5311 16 1 4.4939 -6.9451 5.4798 17 6 3.9569 -7.6656 3.5223 18 7 3.1326 -7.4968 2.5215 19 14 5.0229 -9.1973 3.6061 20 1 4.3001 -10.2635 4.3450 21 1 5.3247 -9.6662 2.2298 22 1 6.2912 -8.8797 4.3102 23 6 3.1494 -4.5701 5.3866 24 6 2.6598 -3.3117 5.1225 25 7 2.5441 -2.8706 3.8829 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 4.2325 1.3461 -0.7344 30 1 4.1203 0.8551 0.9839 31 1 4.4754 -1.3043 0.0940 32 1 3.8259 -0.8468 -1.5160 33 1 2.9284 -3.6413 0.7781 34 1 3.6791 -5.4799 2.1469 35 1 3.0747 -8.1668 1.8224 36 1 3.2399 -4.9206 6.4041 37 1 2.3659 -2.6735 5.9427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588649433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:30 Heat of formation + Delta-G solvation = -24.040489 kcal Electronic energy + Delta-G solvation = -22558.947111 eV Core-core repulsion = 19108.519811 eV Total energy + Delta-G solvation = -3450.427299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89100 -39.23205 -37.80692 -36.06560 -34.41622 -33.85851 -32.83339 -30.64321 -29.33887 -27.61556 -26.69880 -26.06790 -23.16971 -22.05805 -21.52767 -20.06633 -19.32772 -17.78013 -17.64077 -16.77610 -15.95603 -15.63776 -15.31327 -15.10926 -14.70596 -14.28555 -14.04785 -13.84276 -13.58224 -13.52742 -13.03851 -12.80871 -12.66907 -12.58959 -12.37695 -12.29739 -11.57550 -11.45463 -11.39618 -11.26208 -10.96183 -10.38191 -10.24962 -9.88064 -9.85009 -9.70030 -9.41608 -8.73354 -8.08573 -7.78011 -7.13652 -6.89380 -4.68750 2.40706 2.55356 2.71780 2.85724 2.96096 3.00217 3.10075 3.30459 3.55002 3.78497 4.21289 4.31374 4.57866 4.63194 4.82822 5.00191 5.17375 5.22519 5.48095 5.52066 5.60633 5.65449 5.74645 5.78171 5.91404 6.34840 6.49303 6.55960 6.73441 6.86125 7.01511 7.02024 7.30362 7.36736 7.67391 7.83478 8.11415 8.13774 8.33443 8.60996 8.66438 8.75963 9.60689 9.97777 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.003814 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.837005 B = 7340.465961 C = 7778.751397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.599 5.599 3 C 0.526 3.474 4 O -0.535 6.535 5 C -0.155 4.155 6 C -0.119 4.119 7 C 0.112 3.888 8 H 0.109 0.891 9 C 0.484 3.516 10 O -0.465 6.465 11 N -0.655 5.655 12 C 0.336 3.664 13 C -0.243 4.243 14 C 0.144 3.856 15 C -0.455 4.455 16 H 0.083 0.917 17 C 0.080 3.920 18 N -0.787 5.787 19 Si 0.910 3.090 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.284 4.284 24 C 0.120 3.880 25 N -0.556 5.556 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.408 0.592 34 H 0.128 0.872 35 H 0.282 0.718 36 H 0.102 0.898 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 4.372 -9.804 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.332 5.332 3 C 0.315 3.685 4 O -0.412 6.412 5 C -0.195 4.195 6 C -0.157 4.157 7 C 0.003 3.997 8 H 0.127 0.873 9 C 0.266 3.734 10 O -0.334 6.334 11 N -0.301 5.301 12 C 0.111 3.889 13 C -0.269 4.269 14 C 0.135 3.865 15 C -0.486 4.486 16 H 0.101 0.899 17 C -0.140 4.140 18 N -0.412 5.412 19 Si 0.734 3.266 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.308 4.308 24 C -0.035 4.035 25 N -0.275 5.275 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.243 0.757 34 H 0.146 0.854 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.190 6.293 -9.499 11.396 hybrid contribution 0.696 -2.213 -0.153 2.325 sum 0.886 4.081 -9.652 10.517 Atomic orbital electron populations 1.21579 0.77597 1.02698 1.02627 1.47786 1.06495 1.05986 1.72975 1.20784 0.89226 0.84115 0.74411 1.90701 1.78799 1.20959 1.50779 1.22384 0.94871 0.97016 1.05221 1.22614 0.94511 0.95719 1.02852 1.21671 0.93441 0.88788 0.95775 0.87338 1.20900 0.79128 0.82410 0.91003 1.90817 1.42422 1.59363 1.40756 1.43417 1.66955 1.12393 1.07373 1.18162 0.96534 0.90110 0.84078 1.21529 1.11957 0.93910 0.99490 1.17558 0.86468 0.92273 0.90181 1.19583 1.34156 0.94518 1.00315 0.89938 1.25956 0.93681 1.00218 0.94139 1.69777 1.27482 1.34607 1.09350 0.86271 0.81106 0.80554 0.78634 1.19338 1.19952 1.18297 1.21901 1.12406 0.97637 0.98809 1.21756 0.95923 0.93376 0.92401 1.67211 1.25811 1.36436 0.98062 0.92009 0.90533 0.91093 0.87745 0.87371 0.88415 0.88663 0.75685 0.85436 0.90666 0.87963 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 10.95 59.85 0.66 1.83 16 2 N -0.60 -8.17 2.55 -174.03 -0.44 -8.61 16 3 C 0.53 7.90 8.02 -10.86 -0.09 7.81 16 4 O -0.54 -9.88 17.59 5.56 0.10 -9.78 16 5 C -0.15 -1.73 6.86 -26.62 -0.18 -1.91 16 6 C -0.12 -1.09 6.71 -24.98 -0.17 -1.25 16 7 C 0.11 1.32 3.49 -68.17 -0.24 1.08 16 8 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 9 C 0.48 8.26 6.95 -10.99 -0.08 8.19 16 10 O -0.47 -10.25 14.82 5.56 0.08 -10.17 16 11 N -0.65 -11.54 5.39 -11.49 -0.06 -11.61 16 12 C 0.34 7.69 7.42 -154.70 -1.15 6.54 16 13 C -0.24 -5.85 8.62 -38.47 -0.33 -6.18 16 14 C 0.14 3.64 5.60 -106.55 -0.60 3.04 16 15 C -0.45 -11.29 9.12 -37.66 -0.34 -11.63 16 16 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 17 C 0.08 1.84 5.19 -17.34 -0.09 1.75 16 18 N -0.79 -18.47 10.93 55.55 0.61 -17.86 16 19 Si 0.91 17.14 29.59 -169.99 -5.03 12.11 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 C -0.28 -6.79 9.90 -38.71 -0.38 -7.17 16 24 C 0.12 2.81 11.15 -17.68 -0.20 2.61 16 25 N -0.56 -13.72 7.85 -12.52 -0.10 -13.82 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.10 0.89 7.89 -51.93 -0.41 0.48 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.41 5.63 8.70 -40.82 -0.35 5.27 16 34 H 0.13 3.01 6.20 -52.48 -0.33 2.69 16 35 H 0.28 5.96 8.29 -40.82 -0.34 5.62 16 36 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -33.53 321.92 -7.62 -41.15 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.43 Total: 9.04 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.19 Total: 4.70 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.00 Total: -51.90 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.18 Total: -19.95 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.53 -7.62 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588649433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.107 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds