Wall clock time and date at job start Tue Mar 31 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34424 * 124.34755 * 2 1 4 4 O 1.21279 * 124.94194 * 0.40294 * 3 2 1 5 5 C 1.51282 * 110.11009 * 180.43071 * 3 2 1 6 6 C 1.54855 * 104.21386 * 16.26473 * 5 3 2 7 7 C 1.46762 * 124.34987 * 180.02562 * 2 1 3 8 8 H 1.09000 * 110.24118 * 43.87960 * 7 2 1 9 9 C 1.50694 * 110.24844 * 281.96355 * 7 2 1 10 10 O 1.21282 * 120.00078 * 342.62811 * 9 7 2 11 11 N 1.34778 * 119.99986 * 162.62712 * 9 7 2 12 12 C 1.39473 * 119.99740 * 175.17968 * 11 9 7 13 13 C 1.38599 * 119.57643 * 184.97425 * 12 11 9 14 14 C 1.40818 * 118.79399 * 180.20156 * 13 12 11 15 15 C 1.41537 * 120.99370 * 179.79966 * 14 13 12 16 16 H 1.08000 * 119.99741 * 156.34274 * 15 14 13 17 17 C 1.40025 * 120.00549 * 336.34144 * 15 14 13 18 18 N 1.30748 * 119.99870 * 342.79349 * 17 15 14 19 19 Si 1.86804 * 120.00485 * 162.79285 * 17 15 14 20 20 H 1.48496 * 109.46834 * 90.00088 * 19 17 15 21 21 H 1.48502 * 109.47078 * 210.00140 * 19 17 15 22 22 H 1.48497 * 109.46897 * 330.00245 * 19 17 15 23 23 C 1.41174 * 118.00446 * 359.52948 * 14 13 12 24 24 C 1.37587 * 119.01612 * 0.24626 * 23 14 13 25 25 N 1.32084 * 121.11245 * 359.97438 * 24 23 14 26 26 H 1.09000 * 109.46804 * 269.97639 * 1 2 3 27 27 H 1.08995 * 109.46968 * 29.97176 * 1 2 3 28 28 H 1.08991 * 109.47028 * 149.97685 * 1 2 3 29 29 H 1.09007 * 110.48581 * 134.93161 * 5 3 2 30 30 H 1.09005 * 110.48325 * 257.43565 * 5 3 2 31 31 H 1.09004 * 111.03986 * 217.10147 * 6 5 3 32 32 H 1.08994 * 110.99612 * 93.26211 * 6 5 3 33 33 H 0.97002 * 120.00158 * 355.18190 * 11 9 7 34 34 H 1.08004 * 120.60358 * 359.97438 * 13 12 11 35 35 H 0.97004 * 120.00406 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.48958 * 180.23008 * 23 14 13 37 37 H 1.07997 * 119.44331 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2443 0.0070 5 6 3.6898 0.7378 -0.0107 6 6 3.7013 -0.7507 -0.4375 7 6 2.2931 -1.2117 -0.0005 8 1 1.8973 -1.9386 -0.7097 9 6 2.3455 -1.8082 1.3823 10 8 2.0298 -1.1395 2.3436 11 7 2.7431 -3.0850 1.5508 12 6 2.8881 -3.6062 2.8363 13 6 3.3959 -4.8851 3.0027 14 6 3.5313 -5.3966 4.3077 15 6 4.0406 -6.6981 4.5311 16 1 4.4939 -6.9451 5.4798 17 6 3.9569 -7.6656 3.5223 18 7 3.1326 -7.4968 2.5215 19 14 5.0229 -9.1973 3.6061 20 1 4.3001 -10.2635 4.3450 21 1 5.3247 -9.6662 2.2298 22 1 6.2912 -8.8797 4.3102 23 6 3.1494 -4.5701 5.3866 24 6 2.6598 -3.3117 5.1225 25 7 2.5441 -2.8706 3.8829 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 4.2325 1.3461 -0.7344 30 1 4.1203 0.8551 0.9839 31 1 4.4754 -1.3043 0.0940 32 1 3.8259 -0.8468 -1.5160 33 1 2.9284 -3.6413 0.7781 34 1 3.6791 -5.4799 2.1469 35 1 3.0747 -8.1668 1.8224 36 1 3.2399 -4.9206 6.4041 37 1 2.3659 -2.6735 5.9427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588649433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:29 Heat of formation + Delta-G solvation = -46.379081 kcal Electronic energy + Delta-G solvation = -22559.915785 eV Core-core repulsion = 19108.519811 eV Total energy + Delta-G solvation = -3451.395973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06081 -40.74519 -39.39660 -37.29874 -36.10659 -35.51136 -33.77271 -32.46664 -30.88210 -28.89431 -27.89671 -27.65591 -24.38182 -23.83138 -22.88358 -21.53091 -20.49490 -19.47061 -18.92609 -17.93527 -17.45839 -17.09168 -16.64409 -16.40470 -16.10124 -16.04468 -15.69395 -15.05534 -14.77790 -14.69729 -14.57235 -14.32762 -14.12647 -13.77609 -13.56947 -13.23671 -13.19098 -12.90797 -12.65202 -12.39648 -12.28568 -12.02740 -11.93235 -11.49138 -11.19004 -11.13104 -10.97638 -10.02197 -9.91874 -9.49329 -8.87688 -8.63963 -6.55324 0.73063 1.00552 1.37860 1.43789 1.52363 1.58678 1.77382 1.86272 2.21869 2.27148 2.80413 3.26632 3.43570 3.55593 3.76361 3.88675 4.15126 4.21851 4.30605 4.36317 4.54625 4.73372 4.77179 4.78587 4.86619 4.92347 4.92906 5.02071 5.09689 5.23201 5.35614 5.48153 5.63385 5.90478 5.95566 6.16294 6.48091 6.60162 6.79615 6.83932 7.01573 7.29328 7.84598 8.26439 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.003814 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.837005 B = 7340.465961 C = 7778.751397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.602 5.602 3 C 0.512 3.488 4 O -0.581 6.581 5 C -0.153 4.153 6 C -0.105 4.105 7 C 0.119 3.881 8 H 0.156 0.844 9 C 0.483 3.517 10 O -0.520 6.520 11 N -0.643 5.643 12 C 0.335 3.665 13 C -0.258 4.258 14 C 0.114 3.886 15 C -0.486 4.486 16 H 0.081 0.919 17 C 0.045 3.955 18 N -0.807 5.807 19 Si 0.984 3.016 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.261 1.261 23 C -0.300 4.300 24 C 0.112 3.888 25 N -0.582 5.582 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.427 0.573 34 H 0.129 0.871 35 H 0.294 0.706 36 H 0.112 0.888 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 2.863 -12.207 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.334 5.334 3 C 0.302 3.698 4 O -0.461 6.461 5 C -0.193 4.193 6 C -0.143 4.143 7 C 0.011 3.989 8 H 0.174 0.826 9 C 0.268 3.732 10 O -0.392 6.392 11 N -0.292 5.292 12 C 0.109 3.891 13 C -0.283 4.283 14 C 0.106 3.894 15 C -0.516 4.516 16 H 0.099 0.901 17 C -0.174 4.174 18 N -0.432 5.432 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.184 1.184 22 H -0.184 1.184 23 C -0.324 4.324 24 C -0.042 4.042 25 N -0.302 5.302 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.150 0.850 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.266 0.734 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.196 4.758 -11.945 12.914 hybrid contribution 0.313 -1.729 0.616 1.862 sum 1.509 3.029 -11.330 11.824 Atomic orbital electron populations 1.21681 0.77269 1.04530 1.01464 1.48018 1.07125 1.06385 1.71822 1.21521 0.91017 0.83763 0.73492 1.90665 1.79917 1.22748 1.52816 1.22439 0.92260 0.99240 1.05341 1.22759 0.92439 0.93482 1.05626 1.21914 0.95473 0.88802 0.92697 0.82632 1.21954 0.77028 0.81466 0.92789 1.90801 1.44670 1.60468 1.43287 1.43401 1.66490 1.13146 1.06134 1.18420 0.95213 0.89816 0.85650 1.21531 1.13147 0.94528 0.99121 1.17984 0.87062 0.93096 0.91253 1.19858 1.35259 0.95172 1.01312 0.90070 1.26749 0.94392 1.02916 0.93298 1.69786 1.27717 1.35971 1.09728 0.85168 0.78859 0.76329 0.79182 1.19004 1.18435 1.18442 1.22063 1.13154 0.97972 0.99207 1.22132 0.95446 0.93603 0.92992 1.67344 1.26856 1.37182 0.98793 0.94667 0.90256 0.87772 0.84984 0.88920 0.88015 0.84050 0.73433 0.85324 0.89469 0.86994 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.15 10.95 127.77 1.40 3.55 16 2 N -0.60 -15.40 2.55 -823.09 -2.10 -17.50 16 3 C 0.51 14.92 8.02 87.90 0.71 15.63 16 4 O -0.58 -21.69 17.59 -3.03 -0.05 -21.75 16 5 C -0.15 -3.10 6.86 30.67 0.21 -2.89 16 6 C -0.11 -1.50 6.71 31.73 0.21 -1.28 16 7 C 0.12 2.43 3.49 44.70 0.16 2.58 16 8 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 9 C 0.48 15.86 6.95 87.65 0.61 16.47 16 10 O -0.52 -23.14 14.82 -3.04 -0.05 -23.18 16 11 N -0.64 -21.82 5.39 -308.66 -1.66 -23.49 16 12 C 0.33 15.37 7.42 132.75 0.98 16.36 16 13 C -0.26 -12.49 8.62 22.99 0.20 -12.29 16 14 C 0.11 5.90 5.60 -21.11 -0.12 5.78 16 15 C -0.49 -24.32 9.12 23.52 0.21 -24.11 16 16 H 0.08 3.93 7.90 -2.91 -0.02 3.91 16 17 C 0.04 2.02 5.19 85.29 0.44 2.46 16 18 N -0.81 -37.14 10.93 21.84 0.24 -36.90 16 19 Si 0.98 34.03 29.59 68.60 2.03 36.06 16 20 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 21 H -0.26 -8.34 7.11 99.48 0.71 -7.64 16 22 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 23 C -0.30 -14.70 9.90 22.84 0.23 -14.48 16 24 C 0.11 5.36 11.15 84.50 0.94 6.31 16 25 N -0.58 -29.17 7.85 -193.53 -1.52 -30.68 16 26 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.79 7.93 -2.39 -0.02 1.77 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.10 1.46 7.89 -2.39 -0.02 1.44 16 32 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.43 10.73 8.70 -92.71 -0.81 9.93 16 34 H 0.13 6.06 6.20 -2.91 -0.02 6.04 16 35 H 0.29 11.95 8.29 -92.71 -0.77 11.18 16 36 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 37 H 0.14 6.01 8.06 -2.91 -0.02 5.99 16 Total: -1.00 -76.33 321.92 3.37 -72.96 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.30 Total: 30.41 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.18 Total: 14.09 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -5.05 Total: -108.58 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.10 Total: -44.93 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Total: -76.33 3.37 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588649433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.577 kcal (2) G-P(sol) polarization free energy of solvation -76.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds