Wall clock time and date at job start Tue Mar 31 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34618 * 124.46568 * 2 1 4 4 O 1.21286 * 124.91169 * 359.55430 * 3 2 1 5 5 C 1.51281 * 110.15293 * 179.53901 * 3 2 1 6 6 C 1.54637 * 104.19127 * 343.76753 * 5 3 2 7 7 C 1.46766 * 124.35164 * 179.97438 * 2 1 3 8 8 H 1.09002 * 110.24413 * 316.12100 * 7 2 1 9 9 C 1.50700 * 110.24457 * 78.03222 * 7 2 1 10 10 O 1.21279 * 119.99894 * 17.36996 * 9 7 2 11 11 N 1.34773 * 119.99816 * 197.36636 * 9 7 2 12 12 C 1.39478 * 119.99836 * 185.04018 * 11 9 7 13 13 C 1.38593 * 119.57879 * 174.43068 * 12 11 9 14 14 C 1.40809 * 118.79499 * 180.02562 * 13 12 11 15 15 C 1.41541 * 120.99409 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00015 * 24.00147 * 15 14 13 17 17 C 1.40033 * 119.99998 * 203.99253 * 15 14 13 18 18 N 1.30744 * 120.00175 * 202.97329 * 17 15 14 19 19 Si 1.86796 * 119.99749 * 22.97972 * 17 15 14 20 20 H 1.48504 * 109.47168 * 269.99518 * 19 17 15 21 21 H 1.48500 * 109.47371 * 29.99418 * 19 17 15 22 22 H 1.48502 * 109.47213 * 149.99932 * 19 17 15 23 23 C 1.41168 * 118.00669 * 0.24888 * 14 13 12 24 24 C 1.37586 * 119.01799 * 359.50269 * 23 14 13 25 25 N 1.32093 * 121.10603 * 0.51074 * 24 23 14 26 26 H 1.09000 * 109.47041 * 270.02322 * 1 2 3 27 27 H 1.09001 * 109.47645 * 30.02582 * 1 2 3 28 28 H 1.09004 * 109.46835 * 150.02973 * 1 2 3 29 29 H 1.08993 * 110.48997 * 225.09223 * 5 3 2 30 30 H 1.08997 * 110.60389 * 102.49605 * 5 3 2 31 31 H 1.09006 * 110.96682 * 266.67768 * 6 5 3 32 32 H 1.08993 * 110.97133 * 142.91888 * 6 5 3 33 33 H 0.96998 * 120.00306 * 5.04312 * 11 9 7 34 34 H 1.08007 * 120.60206 * 0.04477 * 13 12 11 35 35 H 0.97002 * 119.99571 * 354.97800 * 18 17 15 36 36 H 1.08006 * 120.49324 * 179.74657 * 23 14 13 37 37 H 1.08003 * 119.45044 * 180.22934 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2268 1.1099 0.0000 4 8 1.7996 2.2450 -0.0077 5 6 3.6926 0.7359 0.0114 6 6 3.7013 -0.7506 0.4373 7 6 2.2931 -1.2117 0.0005 8 1 1.8974 -1.9387 0.7097 9 6 2.3453 -1.8083 -1.3824 10 8 2.0295 -1.1395 -2.3436 11 7 2.7430 -3.0849 -1.5509 12 6 2.8924 -3.6048 -2.8365 13 6 3.4119 -4.8788 -3.0031 14 6 3.5560 -5.3872 -4.3083 15 6 4.0819 -6.6821 -4.5323 16 1 4.0201 -7.4315 -3.7570 17 6 4.6820 -6.9916 -5.7590 18 7 4.7603 -8.2358 -6.1531 19 14 5.3709 -5.6268 -6.8324 20 1 4.3134 -5.1410 -7.7549 21 1 5.8315 -4.5063 -5.9736 22 1 6.5153 -6.1480 -7.6222 23 6 3.1659 -4.5643 -5.3870 24 6 2.6555 -3.3144 -5.1224 25 7 2.5363 -2.8744 -3.8826 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 4.2357 1.3433 0.7354 30 1 4.1254 0.8505 -0.9823 31 1 3.8261 -0.8466 1.5160 32 1 4.4753 -1.3041 -0.0941 33 1 2.9254 -3.6422 -0.7782 34 1 3.7006 -5.4712 -2.1474 35 1 4.4692 -8.9500 -5.5648 36 1 3.2630 -4.9124 -6.4049 37 1 2.3514 -2.6805 -5.9423 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588649438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:33 Heat of formation + Delta-G solvation = -25.669015 kcal Electronic energy + Delta-G solvation = -22497.284104 eV Core-core repulsion = 19046.786187 eV Total energy + Delta-G solvation = -3450.497918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01886 -39.43648 -38.03257 -36.19602 -34.66546 -33.86683 -32.94161 -31.23725 -29.61031 -27.84013 -26.79430 -25.76141 -23.37847 -22.07160 -21.71311 -20.12987 -19.38345 -18.62865 -17.71248 -16.96449 -16.28238 -15.71586 -15.46499 -15.30119 -14.94341 -14.60434 -13.98591 -13.82629 -13.72213 -13.67144 -13.17456 -12.97222 -12.87368 -12.73540 -12.49685 -12.33450 -11.94037 -11.62880 -11.50290 -11.21784 -10.84014 -10.36389 -10.00375 -9.94849 -9.86557 -9.59163 -9.32156 -8.86394 -8.41691 -7.94838 -7.50714 -7.36428 -4.87247 2.15644 2.44517 2.59390 2.73755 2.99829 3.13985 3.29528 3.35239 3.46303 3.88383 4.11906 4.20169 4.47312 4.52197 4.67399 4.88364 5.06472 5.15840 5.33654 5.37067 5.42853 5.55858 5.63131 5.65450 5.71221 6.21447 6.24909 6.30402 6.39258 6.51200 6.90888 7.02841 7.06711 7.31991 7.45761 7.47719 7.85636 8.03969 8.14264 8.25884 8.51596 8.52896 9.36937 9.78429 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034110 B = 0.003657 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.670466 B = 7653.919060 C = 7739.228978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.601 5.601 3 C 0.526 3.474 4 O -0.533 6.533 5 C -0.155 4.155 6 C -0.119 4.119 7 C 0.113 3.887 8 H 0.109 0.891 9 C 0.484 3.516 10 O -0.460 6.460 11 N -0.658 5.658 12 C 0.361 3.639 13 C -0.301 4.301 14 C 0.132 3.868 15 C -0.506 4.506 16 H 0.079 0.921 17 C 0.047 3.953 18 N -0.798 5.798 19 Si 1.077 2.923 20 H -0.272 1.272 21 H -0.265 1.265 22 H -0.288 1.288 23 C -0.311 4.311 24 C 0.141 3.859 25 N -0.561 5.561 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.408 0.592 34 H 0.105 0.895 35 H 0.289 0.711 36 H 0.115 0.885 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 7.818 12.813 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.335 5.335 3 C 0.315 3.685 4 O -0.409 6.409 5 C -0.195 4.195 6 C -0.157 4.157 7 C 0.004 3.996 8 H 0.127 0.873 9 C 0.266 3.734 10 O -0.327 6.327 11 N -0.305 5.305 12 C 0.135 3.865 13 C -0.327 4.327 14 C 0.123 3.877 15 C -0.535 4.535 16 H 0.097 0.903 17 C -0.175 4.175 18 N -0.420 5.420 19 Si 0.903 3.097 20 H -0.199 1.199 21 H -0.189 1.189 22 H -0.215 1.215 23 C -0.335 4.335 24 C -0.012 4.012 25 N -0.281 5.281 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.243 0.757 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.356 10.024 10.852 14.835 hybrid contribution -0.457 -1.995 1.724 2.676 sum -1.813 8.029 12.577 15.031 Atomic orbital electron populations 1.21544 0.77513 1.03750 1.01395 1.47842 1.06461 1.05915 1.73235 1.20859 0.89194 0.84132 0.74337 1.90709 1.78852 1.20872 1.50478 1.22345 0.94840 0.97000 1.05326 1.22580 0.94383 0.95826 1.02941 1.21646 0.93564 0.88953 0.95446 0.87294 1.20970 0.78988 0.82268 0.91200 1.90835 1.41906 1.59201 1.40778 1.43470 1.67233 1.12656 1.07184 1.18065 0.94368 0.89730 0.84331 1.21146 1.17537 0.95997 0.98004 1.17651 0.87693 0.92029 0.90280 1.20647 1.34177 0.96837 1.01882 0.90251 1.27385 0.92521 1.00901 0.96724 1.70528 1.34138 1.01317 1.35999 0.83550 0.76421 0.73880 0.75868 1.19893 1.18912 1.21531 1.22053 1.13641 0.98400 0.99371 1.21843 0.93939 0.92946 0.92489 1.67314 1.26603 1.36132 0.98011 0.92449 0.90462 0.90996 0.87632 0.87311 0.88584 0.88407 0.75671 0.87657 0.89932 0.86770 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 10.96 59.84 0.66 1.76 16 2 N -0.60 -7.54 2.56 -173.96 -0.45 -7.99 16 3 C 0.53 7.43 8.03 -10.77 -0.09 7.34 16 4 O -0.53 -9.42 17.60 5.55 0.10 -9.32 16 5 C -0.16 -1.60 6.85 -26.74 -0.18 -1.78 16 6 C -0.12 -0.96 6.69 -25.10 -0.17 -1.12 16 7 C 0.11 1.18 3.49 -68.16 -0.24 0.94 16 8 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.48 7.50 6.95 -10.99 -0.08 7.42 16 10 O -0.46 -9.47 14.83 5.56 0.08 -9.39 16 11 N -0.66 -10.26 5.39 -11.49 -0.06 -10.32 16 12 C 0.36 7.59 7.41 -154.70 -1.15 6.45 16 13 C -0.30 -6.61 9.73 -38.48 -0.37 -6.99 16 14 C 0.13 3.22 5.23 -106.55 -0.56 2.66 16 15 C -0.51 -12.82 9.47 -37.65 -0.36 -13.18 16 16 H 0.08 2.05 8.06 -52.48 -0.42 1.62 16 17 C 0.05 1.17 5.39 -17.34 -0.09 1.08 16 18 N -0.80 -20.22 13.65 55.55 0.76 -19.46 16 19 Si 1.08 23.25 25.04 -169.99 -4.26 18.99 16 20 H -0.27 -5.59 6.32 56.52 0.36 -5.23 16 21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.31 -7.36 7.54 -38.71 -0.29 -7.65 16 24 C 0.14 3.20 11.15 -17.68 -0.20 3.00 16 25 N -0.56 -13.10 7.85 -12.52 -0.10 -13.20 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.77 7.89 -51.93 -0.41 0.36 16 33 H 0.41 4.55 8.70 -40.82 -0.36 4.19 16 34 H 0.11 2.07 8.06 -52.48 -0.42 1.65 16 35 H 0.29 7.07 8.73 -40.82 -0.36 6.71 16 36 H 0.11 2.63 4.22 -52.48 -0.22 2.41 16 37 H 0.13 2.58 8.06 -52.48 -0.42 2.16 16 LS Contribution 316.86 15.07 4.78 4.78 Total: -1.00 -33.79 316.86 -6.66 -40.45 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.40 Total: 5.53 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.11 Total: -0.06 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.15 Total: -50.97 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.18 Total: -18.71 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.26 Total: 18.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.79 -6.66 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588649438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.779 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds