Wall clock time and date at job start Tue Mar 31 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34618 * 124.46568 * 2 1 4 4 O 1.21286 * 124.91169 * 359.55430 * 3 2 1 5 5 C 1.51281 * 110.15293 * 179.53901 * 3 2 1 6 6 C 1.54637 * 104.19127 * 343.76753 * 5 3 2 7 7 C 1.46766 * 124.35164 * 179.97438 * 2 1 3 8 8 H 1.09002 * 110.24413 * 316.12100 * 7 2 1 9 9 C 1.50700 * 110.24457 * 78.03222 * 7 2 1 10 10 O 1.21279 * 119.99894 * 17.36996 * 9 7 2 11 11 N 1.34773 * 119.99816 * 197.36636 * 9 7 2 12 12 C 1.39478 * 119.99836 * 185.04018 * 11 9 7 13 13 C 1.38593 * 119.57879 * 174.43068 * 12 11 9 14 14 C 1.40809 * 118.79499 * 180.02562 * 13 12 11 15 15 C 1.41541 * 120.99409 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00015 * 24.00147 * 15 14 13 17 17 C 1.40033 * 119.99998 * 203.99253 * 15 14 13 18 18 N 1.30744 * 120.00175 * 202.97329 * 17 15 14 19 19 Si 1.86796 * 119.99749 * 22.97972 * 17 15 14 20 20 H 1.48504 * 109.47168 * 269.99518 * 19 17 15 21 21 H 1.48500 * 109.47371 * 29.99418 * 19 17 15 22 22 H 1.48502 * 109.47213 * 149.99932 * 19 17 15 23 23 C 1.41168 * 118.00669 * 0.24888 * 14 13 12 24 24 C 1.37586 * 119.01799 * 359.50269 * 23 14 13 25 25 N 1.32093 * 121.10603 * 0.51074 * 24 23 14 26 26 H 1.09000 * 109.47041 * 270.02322 * 1 2 3 27 27 H 1.09001 * 109.47645 * 30.02582 * 1 2 3 28 28 H 1.09004 * 109.46835 * 150.02973 * 1 2 3 29 29 H 1.08993 * 110.48997 * 225.09223 * 5 3 2 30 30 H 1.08997 * 110.60389 * 102.49605 * 5 3 2 31 31 H 1.09006 * 110.96682 * 266.67768 * 6 5 3 32 32 H 1.08993 * 110.97133 * 142.91888 * 6 5 3 33 33 H 0.96998 * 120.00306 * 5.04312 * 11 9 7 34 34 H 1.08007 * 120.60206 * 0.04477 * 13 12 11 35 35 H 0.97002 * 119.99571 * 354.97800 * 18 17 15 36 36 H 1.08006 * 120.49324 * 179.74657 * 23 14 13 37 37 H 1.08003 * 119.45044 * 180.22934 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2268 1.1099 0.0000 4 8 1.7996 2.2450 -0.0077 5 6 3.6926 0.7359 0.0114 6 6 3.7013 -0.7506 0.4373 7 6 2.2931 -1.2117 0.0005 8 1 1.8974 -1.9387 0.7097 9 6 2.3453 -1.8083 -1.3824 10 8 2.0295 -1.1395 -2.3436 11 7 2.7430 -3.0849 -1.5509 12 6 2.8924 -3.6048 -2.8365 13 6 3.4119 -4.8788 -3.0031 14 6 3.5560 -5.3872 -4.3083 15 6 4.0819 -6.6821 -4.5323 16 1 4.0201 -7.4315 -3.7570 17 6 4.6820 -6.9916 -5.7590 18 7 4.7603 -8.2358 -6.1531 19 14 5.3709 -5.6268 -6.8324 20 1 4.3134 -5.1410 -7.7549 21 1 5.8315 -4.5063 -5.9736 22 1 6.5153 -6.1480 -7.6222 23 6 3.1659 -4.5643 -5.3870 24 6 2.6555 -3.3144 -5.1224 25 7 2.5363 -2.8744 -3.8826 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 4.2357 1.3433 0.7354 30 1 4.1254 0.8505 -0.9823 31 1 3.8261 -0.8466 1.5160 32 1 4.4753 -1.3041 -0.0941 33 1 2.9254 -3.6422 -0.7782 34 1 3.7006 -5.4712 -2.1474 35 1 4.4692 -8.9500 -5.5648 36 1 3.2630 -4.9124 -6.4049 37 1 2.3514 -2.6805 -5.9423 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588649438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:32 Heat of formation + Delta-G solvation = -49.496334 kcal Electronic energy + Delta-G solvation = -22498.317334 eV Core-core repulsion = 19046.786187 eV Total energy + Delta-G solvation = -3451.531148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10084 -40.87662 -39.53551 -37.33760 -36.30397 -35.51237 -33.78725 -33.06656 -31.10197 -28.99678 -27.66089 -27.59916 -24.57654 -23.70131 -23.01216 -21.52030 -20.48838 -20.33846 -18.90595 -18.13747 -17.60000 -17.14878 -16.91430 -16.45259 -16.36534 -16.04761 -15.52347 -15.10659 -14.86922 -14.78274 -14.73991 -14.50808 -14.19530 -13.79993 -13.72717 -13.57962 -13.26769 -12.95812 -12.64060 -12.42753 -12.25542 -12.09629 -11.55350 -11.39905 -11.19765 -11.09323 -10.99256 -10.28174 -10.00813 -9.60908 -9.38153 -9.00734 -6.79646 0.51923 0.79383 1.36132 1.38736 1.55101 1.67042 1.77867 1.80769 2.13598 2.20204 2.66155 3.25606 3.41750 3.48299 3.55244 3.87758 4.08000 4.16816 4.25605 4.36450 4.49921 4.59011 4.65344 4.67868 4.76760 4.77833 4.82010 4.92707 5.01843 5.24435 5.34233 5.35827 5.46318 5.62120 5.87829 5.96186 6.25353 6.43496 6.47712 6.65250 7.00874 7.20425 7.69219 7.88173 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034110 B = 0.003657 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.670466 B = 7653.919060 C = 7739.228978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.604 5.604 3 C 0.512 3.488 4 O -0.581 6.581 5 C -0.154 4.154 6 C -0.106 4.106 7 C 0.120 3.880 8 H 0.159 0.841 9 C 0.484 3.516 10 O -0.515 6.515 11 N -0.643 5.643 12 C 0.362 3.638 13 C -0.305 4.305 14 C 0.115 3.885 15 C -0.532 4.532 16 H 0.062 0.938 17 C 0.022 3.978 18 N -0.820 5.820 19 Si 1.103 2.897 20 H -0.256 1.256 21 H -0.269 1.269 22 H -0.277 1.277 23 C -0.323 4.323 24 C 0.136 3.864 25 N -0.578 5.578 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.103 0.897 33 H 0.431 0.569 34 H 0.127 0.873 35 H 0.285 0.715 36 H 0.117 0.883 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 8.325 14.954 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.336 5.336 3 C 0.302 3.698 4 O -0.461 6.461 5 C -0.194 4.194 6 C -0.144 4.144 7 C 0.012 3.988 8 H 0.176 0.824 9 C 0.268 3.732 10 O -0.386 6.386 11 N -0.292 5.292 12 C 0.135 3.865 13 C -0.330 4.330 14 C 0.106 3.894 15 C -0.562 4.562 16 H 0.081 0.919 17 C -0.196 4.196 18 N -0.443 5.443 19 Si 0.925 3.075 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.204 1.204 23 C -0.347 4.347 24 C -0.018 4.018 25 N -0.298 5.298 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.159 0.841 32 H 0.122 0.878 33 H 0.271 0.729 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.939 10.471 13.052 16.759 hybrid contribution -0.687 -2.060 1.163 2.464 sum -1.626 8.411 14.215 16.597 Atomic orbital electron populations 1.21644 0.77205 1.02758 1.03026 1.48076 1.07084 1.06382 1.72048 1.21593 0.90988 0.83781 0.73469 1.90673 1.79989 1.22784 1.52671 1.22401 0.92205 0.99386 1.05390 1.22728 0.92522 0.93430 1.05682 1.21911 0.95376 0.88894 0.92612 0.82375 1.21986 0.76906 0.81420 0.92844 1.90824 1.44203 1.60370 1.43236 1.43431 1.66543 1.13317 1.05936 1.18315 0.92914 0.89348 0.85911 1.21366 1.17132 0.96629 0.97892 1.17898 0.87725 0.91919 0.91810 1.20646 1.36182 0.97269 1.02119 0.91942 1.28233 0.92113 1.01795 0.97502 1.70577 1.35788 1.01630 1.36256 0.83211 0.76824 0.72136 0.75319 1.18220 1.19404 1.20352 1.22158 1.14251 0.98817 0.99443 1.22242 0.93315 0.92959 0.93260 1.67458 1.26807 1.36841 0.98731 0.89440 0.92657 0.90824 0.85139 0.88839 0.84110 0.87805 0.72904 0.85546 0.90403 0.86537 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.96 10.96 127.77 1.40 3.36 16 2 N -0.60 -13.69 2.56 -822.77 -2.11 -15.80 16 3 C 0.51 13.72 8.03 87.87 0.71 14.43 16 4 O -0.58 -20.63 17.60 -3.05 -0.05 -20.68 16 5 C -0.15 -2.75 6.85 30.59 0.21 -2.54 16 6 C -0.11 -1.18 6.69 31.65 0.21 -0.97 16 7 C 0.12 2.00 3.49 44.70 0.16 2.15 16 8 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 9 C 0.48 13.64 6.95 87.66 0.61 14.25 16 10 O -0.52 -20.65 14.83 -3.03 -0.04 -20.69 16 11 N -0.64 -17.99 5.39 -308.66 -1.66 -19.65 16 12 C 0.36 14.56 7.41 132.75 0.98 15.54 16 13 C -0.30 -12.94 9.73 22.98 0.22 -12.72 16 14 C 0.11 5.57 5.23 -21.12 -0.11 5.46 16 15 C -0.53 -27.32 9.47 23.52 0.22 -27.10 16 16 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 17 C 0.02 1.08 5.39 85.29 0.46 1.54 16 18 N -0.82 -42.13 13.65 21.84 0.30 -41.83 16 19 Si 1.10 46.44 25.04 68.60 1.72 48.15 16 20 H -0.26 -10.06 6.32 99.48 0.63 -9.43 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 23 C -0.32 -15.07 7.54 22.84 0.17 -14.89 16 24 C 0.14 6.02 11.15 84.50 0.94 6.96 16 25 N -0.58 -26.29 7.85 -193.53 -1.52 -27.81 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.37 7.93 -2.39 -0.02 1.35 16 28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.10 1.13 7.89 -2.39 -0.02 1.11 16 33 H 0.43 7.73 8.70 -92.71 -0.81 6.92 16 34 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 35 H 0.28 14.32 8.73 -92.71 -0.81 13.51 16 36 H 0.12 5.29 4.22 -2.91 -0.01 5.27 16 37 H 0.15 5.86 8.06 -2.91 -0.02 5.83 16 Total: -1.00 -76.46 316.86 3.01 -73.45 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.19 Total: 19.40 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.19 Total: 5.47 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.99 Total: -105.10 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.10 Total: -41.37 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.72 Total: 48.15 kcal Total: -76.46 3.01 -73.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588649438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.955 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds