Wall clock time and date at job start Tue Mar 31 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00023 * 2 1 4 4 C 1.53002 * 109.46763 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47165 * 64.99679 * 4 3 2 6 6 C 1.46499 * 120.00087 * 262.79363 * 5 4 3 7 7 C 1.50697 * 109.47567 * 270.00642 * 6 5 4 8 8 H 1.08008 * 119.99871 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00305 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00070 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00375 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47265 * 89.99667 * 11 9 7 13 13 H 1.48497 * 109.47049 * 209.99915 * 11 9 7 14 14 H 1.48507 * 109.46712 * 329.99352 * 11 9 7 15 15 C 1.34772 * 119.99840 * 82.80418 * 5 4 3 16 16 O 1.21511 * 120.00131 * 183.10483 * 15 5 4 17 17 C 1.48222 * 120.00376 * 3.09609 * 15 5 4 18 18 C 1.39536 * 119.64682 * 173.18874 * 17 15 5 19 19 C 1.38618 * 119.27253 * 180.02562 * 18 17 15 20 20 C 1.38491 * 118.57552 * 359.71792 * 19 18 17 21 21 C 1.39741 * 119.23800 * 0.52487 * 20 19 18 22 22 C 1.43200 * 119.66683 * 179.74711 * 21 20 19 23 23 N 5.78635 * 98.79944 * 11.09711 * 2 1 3 24 24 N 1.32423 * 119.64614 * 353.16850 * 17 15 5 25 25 H 1.09001 * 109.47738 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47589 * 300.00996 * 1 2 3 27 27 H 1.09008 * 109.46974 * 60.00037 * 1 2 3 28 28 H 1.08998 * 109.47567 * 59.99693 * 3 2 1 29 29 H 1.09000 * 109.47108 * 299.99224 * 3 2 1 30 30 H 1.09000 * 109.46797 * 304.99438 * 4 3 2 31 31 H 1.09001 * 109.46487 * 185.00056 * 4 3 2 32 32 H 1.09004 * 109.46920 * 30.00443 * 6 5 4 33 33 H 1.08999 * 109.47064 * 149.99894 * 6 5 4 34 34 H 0.96998 * 120.00491 * 180.02562 * 10 9 7 35 35 H 1.07993 * 120.36620 * 359.97438 * 18 17 15 36 36 H 1.07995 * 120.71469 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.38339 * 180.28620 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5637 -1.2508 6 6 4.2582 -0.8732 -1.2962 7 6 5.7078 -1.1120 -0.9607 8 1 6.3549 -0.2768 -0.7364 9 6 6.2084 -2.3965 -0.9410 10 7 5.4206 -3.4135 -1.2146 11 14 8.0051 -2.6926 -0.5243 12 1 8.1489 -2.8797 0.9417 13 1 8.4822 -3.9102 -1.2279 14 1 8.8124 -1.5232 -0.9558 15 6 4.1237 1.3146 -2.3602 16 8 4.4349 0.7909 -3.4116 17 6 3.9056 2.7794 -2.2981 18 6 4.1971 3.5685 -3.4114 19 6 3.9907 4.9376 -3.3446 20 6 3.4938 5.4760 -2.1694 21 6 3.2277 4.6296 -1.0898 22 6 2.7188 5.1773 0.1316 23 7 2.3142 5.6113 1.1006 24 7 3.4359 3.3252 -1.1868 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.8507 0.5684 0.8428 31 1 3.9784 2.1764 0.0902 32 1 3.6279 -1.3900 -0.5725 33 1 4.0494 -1.2529 -2.2964 34 1 5.7726 -4.3173 -1.2003 35 1 4.5800 3.1176 -4.3150 36 1 4.2080 5.5702 -4.1925 37 1 3.3176 6.5383 -2.0869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589431842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:41 Heat of formation + Delta-G solvation = 15.827632 kcal Electronic energy + Delta-G solvation = -22855.396934 eV Core-core repulsion = 19406.698446 eV Total energy + Delta-G solvation = -3448.698488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92207 -38.67217 -37.42014 -36.68850 -35.02637 -33.17267 -32.46686 -31.80252 -29.46665 -27.29952 -25.94284 -25.02438 -24.71191 -22.65637 -22.50258 -20.13220 -18.53746 -17.18004 -16.58156 -16.42584 -16.12918 -15.98862 -15.36525 -15.21345 -14.95360 -14.52643 -14.18315 -14.04637 -13.83165 -13.45479 -13.14426 -13.01187 -12.86877 -12.46509 -12.17770 -12.04024 -11.73316 -11.52879 -11.20566 -10.89303 -10.82491 -10.46642 -10.26544 -10.13657 -9.86554 -9.53422 -9.38804 -9.28334 -8.99776 -8.36501 -7.63865 -5.97774 -4.02616 0.24831 0.68164 2.25078 2.44443 3.20357 3.26835 3.34482 3.40467 3.44220 3.68873 3.94804 4.20287 4.30787 4.48416 4.57157 4.66890 4.71910 5.09107 5.13925 5.36550 5.43276 5.51206 5.62232 5.68634 5.71093 5.79179 5.84588 5.88464 6.08335 6.17731 6.56792 7.07729 7.15287 7.36179 7.47960 7.57419 7.60371 7.98679 8.29100 8.39277 8.83194 9.04266 9.61367 11.10212 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.005391 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.844240 B = 5192.469745 C = 6011.709032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.059 3.941 4 C 0.109 3.891 5 N -0.559 5.559 6 C 0.247 3.753 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.551 3.449 16 O -0.530 6.530 17 C 0.106 3.894 18 C -0.088 4.088 19 C -0.078 4.078 20 C -0.109 4.109 21 C 0.177 3.823 22 C 0.269 3.731 23 N -0.390 5.390 24 N -0.422 5.422 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 17.455 -2.014 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.018 4.018 4 C -0.015 4.015 5 N -0.287 5.287 6 C 0.128 3.872 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.334 3.666 16 O -0.408 6.408 17 C -0.035 4.035 18 C -0.110 4.110 19 C -0.103 4.103 20 C -0.132 4.132 21 C 0.037 3.963 22 C -0.048 4.048 23 N -0.066 5.066 24 N -0.136 5.136 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.306 16.849 -0.370 18.369 hybrid contribution 1.035 0.391 -0.683 1.301 sum -6.270 17.240 -1.054 18.376 Atomic orbital electron populations 1.22663 0.82301 1.02341 0.99012 1.88058 1.18536 1.27894 1.95163 1.22934 0.95153 0.84312 0.99417 1.22008 0.91455 1.00356 0.87714 1.48121 1.61172 1.11502 1.07954 1.19434 0.96006 0.72409 0.99317 1.21439 0.95107 0.92560 1.47573 0.92501 1.24908 0.97903 0.95896 0.95250 1.69945 1.35419 0.98911 1.48811 0.86518 0.84999 0.77730 0.78274 1.20675 1.21135 1.19953 1.17700 0.79929 0.83806 0.85124 1.90779 1.48874 1.71787 1.29318 1.21834 0.96326 0.96359 0.88953 1.22453 0.95117 0.93634 0.99757 1.21611 0.96020 0.94897 0.97786 1.22127 0.97445 1.01110 0.92532 1.16486 1.00849 0.90096 0.88822 1.24973 0.93952 0.93654 0.92247 1.81278 1.07844 1.08296 1.09232 1.68247 1.10038 1.10315 1.25037 0.89900 0.94814 0.94816 0.93606 0.93654 0.89878 0.86870 0.93593 0.93811 0.92767 0.82370 0.82993 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.95 10.41 -35.23 -0.37 -7.32 16 3 C 0.06 0.97 5.51 37.16 0.20 1.18 16 4 C 0.11 1.97 5.37 -4.04 -0.02 1.95 16 5 N -0.56 -12.23 2.42 -176.04 -0.43 -12.65 16 6 C 0.25 6.60 5.15 -5.20 -0.03 6.57 16 7 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 11 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.55 11.32 7.59 -12.16 -0.09 11.23 16 16 O -0.53 -12.65 15.90 5.36 0.09 -12.57 16 17 C 0.11 1.59 6.49 -83.03 -0.54 1.05 16 18 C -0.09 -0.99 9.63 -38.96 -0.38 -1.37 16 19 C -0.08 -0.56 10.16 -39.35 -0.40 -0.96 16 20 C -0.11 -0.80 9.80 -38.93 -0.38 -1.18 16 21 C 0.18 1.86 6.58 -85.11 -0.56 1.30 16 22 C 0.27 3.03 15.53 -22.46 -0.35 2.68 16 23 N -0.39 -5.03 18.54 41.85 0.78 -4.25 16 24 N -0.42 -5.68 4.33 -7.73 -0.03 -5.72 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.73 6.90 -51.93 -0.36 0.37 16 30 H 0.08 1.59 8.02 -51.93 -0.42 1.18 16 31 H 0.11 1.85 5.25 -52.22 -0.27 1.58 16 32 H 0.05 1.29 7.83 -51.93 -0.41 0.88 16 33 H 0.04 1.30 7.38 -51.93 -0.38 0.92 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.16 1.75 7.65 -52.49 -0.40 1.34 16 36 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -34.15 331.24 -5.43 -39.58 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.32 Total: -3.33 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -1.85 Total: 10.36 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 1.05 Total: -48.64 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.28 Total: -19.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.15 -5.43 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589431842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.408 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds