Wall clock time and date at job start Tue Mar 31 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99566 * 2 1 4 4 H 1.48495 * 109.46987 * 269.99676 * 3 2 1 5 5 H 1.48503 * 109.47185 * 29.99822 * 3 2 1 6 6 H 1.48504 * 109.47036 * 149.99892 * 3 2 1 7 7 C 1.38950 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00184 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99545 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99630 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99885 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99736 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.47082 * 180.02562 * 12 10 9 14 14 C 1.39050 * 120.00095 * 180.02562 * 13 12 10 15 15 C 1.39245 * 119.86450 * 359.97438 * 14 13 12 16 16 C 1.37722 * 120.10223 * 179.97438 * 15 14 13 17 17 C 1.39475 * 119.68272 * 0.02562 * 16 15 14 18 18 C 1.39947 * 120.14194 * 0.02562 * 17 16 15 19 19 C 1.37425 * 119.91827 * 359.97438 * 18 17 16 20 20 C 1.50583 * 119.19444 * 180.02562 * 18 17 16 21 21 C 1.52695 * 109.90268 * 326.07020 * 20 18 17 22 22 N 1.46038 * 111.03377 * 51.09845 * 21 20 18 23 23 C 1.34792 * 121.21197 * 322.23293 * 22 21 20 24 24 O 1.21596 * 120.42735 * 182.75331 * 23 22 21 25 25 H 0.96995 * 120.00147 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99910 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47270 * 60.00183 * 12 10 9 28 28 H 1.08998 * 109.47595 * 300.00682 * 12 10 9 29 29 H 0.96997 * 120.00050 * 0.02562 * 13 12 10 30 30 H 1.07996 * 119.94251 * 359.97438 * 15 14 13 31 31 H 1.08005 * 120.15672 * 180.29926 * 16 15 14 32 32 H 1.08004 * 120.05658 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.40360 * 205.93468 * 20 18 17 34 34 H 1.08997 * 109.32494 * 86.15541 * 20 18 17 35 35 H 1.08998 * 109.16447 * 290.70255 * 21 20 18 36 36 H 1.09001 * 109.12904 * 171.47248 * 21 20 18 37 37 H 0.97003 * 119.39395 * 142.26190 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0021 11 8 3.4474 -3.4208 0.0021 12 6 5.5608 -2.3703 0.0021 13 7 6.0492 -3.7516 0.0027 14 6 7.4163 -4.0056 0.0034 15 6 8.3186 -2.9450 0.0029 16 6 9.6737 -3.1910 0.0041 17 6 10.1368 -4.5066 0.0052 18 6 9.2286 -5.5714 0.0046 19 6 7.8776 -5.3199 0.0034 20 6 9.7521 -6.9833 0.0064 21 6 11.0510 -7.0572 -0.7929 22 7 11.9978 -6.0375 -0.3498 23 6 11.5820 -4.8058 0.0065 24 8 12.3872 -3.9523 0.3255 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3632 0.0007 27 1 5.9241 -1.8557 0.8917 28 1 5.9242 -1.8572 -0.8882 29 1 5.4190 -4.4889 0.0027 30 1 7.9552 -1.9281 0.0016 31 1 10.3744 -2.3691 0.0086 32 1 7.1747 -6.1399 0.0025 33 1 9.0117 -7.6445 -0.4438 34 1 9.9406 -7.2968 1.0332 35 1 10.8300 -6.9054 -1.8494 36 1 11.4974 -8.0425 -0.6588 37 1 12.9435 -6.2503 -0.3117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594714677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:17 Heat of formation + Delta-G solvation = -72.305922 kcal Electronic energy + Delta-G solvation = -21574.205603 eV Core-core repulsion = 18121.685358 eV Total energy + Delta-G solvation = -3452.520246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56115 -40.57937 -39.42047 -37.38193 -36.31064 -35.66988 -33.84885 -32.95058 -31.33832 -29.87302 -28.54598 -26.17591 -24.96261 -23.89938 -22.57322 -21.41389 -20.48252 -20.16408 -18.72295 -18.20040 -17.87783 -17.24558 -16.77379 -16.57005 -16.46373 -16.17789 -15.77701 -15.22743 -14.89312 -14.78914 -14.62001 -14.54572 -14.30977 -14.07432 -13.81664 -13.60297 -13.32007 -13.04216 -12.84922 -12.45412 -12.34724 -12.00681 -11.81654 -11.58556 -11.11690 -10.93959 -10.65556 -10.33247 -10.08467 -9.73251 -8.46233 -8.45297 -6.08841 0.09301 0.47577 1.30439 1.34158 1.44217 1.79866 1.89638 2.17948 2.21364 2.39297 2.91487 2.94836 3.10226 3.69989 3.75516 3.87057 3.96045 4.08640 4.28258 4.36697 4.41351 4.43688 4.44543 4.55141 4.79382 4.94208 5.02240 5.10606 5.28627 5.32665 5.46002 5.51679 5.74890 5.86528 6.00305 6.22937 6.26243 6.50218 6.66042 6.78415 7.27219 7.28706 7.79465 8.70469 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.035900 B = 0.002878 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.765193 B = 9727.774915 C =10446.868878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.333 4.333 8 H 0.059 0.941 9 N -0.578 5.578 10 C 0.442 3.558 11 O -0.620 6.620 12 C 0.118 3.882 13 N -0.722 5.722 14 C 0.248 3.752 15 C -0.224 4.224 16 C -0.012 4.012 17 C -0.234 4.234 18 C 0.004 3.996 19 C -0.210 4.210 20 C -0.103 4.103 21 C 0.112 3.888 22 N -0.720 5.720 23 C 0.566 3.434 24 O -0.595 6.595 25 H 0.281 0.719 26 H 0.393 0.607 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.408 0.592 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.422 -10.190 -1.734 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.210 4.210 3 Si 0.781 3.219 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.151 1.151 7 C -0.462 4.462 8 H 0.077 0.923 9 N -0.218 5.218 10 C 0.230 3.770 11 O -0.506 6.506 12 C -0.010 4.010 13 N -0.350 5.350 14 C 0.140 3.860 15 C -0.246 4.246 16 C -0.032 4.032 17 C -0.240 4.240 18 C 0.002 3.998 19 C -0.232 4.232 20 C -0.140 4.140 21 C -0.011 4.011 22 N -0.372 5.372 23 C 0.357 3.643 24 O -0.478 6.478 25 H 0.091 0.909 26 H 0.229 0.771 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.246 0.754 30 H 0.160 0.840 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 22.909 -10.122 -1.597 25.097 hybrid contribution -0.374 0.791 0.080 0.879 sum 22.535 -9.331 -1.517 24.438 Atomic orbital electron populations 1.69790 1.08183 1.29494 1.49326 1.26125 0.96450 1.02776 0.95666 0.85408 0.79671 0.76694 0.80087 1.18031 1.20102 1.15108 1.19007 0.81188 0.95122 1.50864 0.92257 1.41925 1.06013 1.07525 1.66370 1.20689 0.90527 0.83700 0.82111 1.90536 1.71004 1.32621 1.56417 1.21050 0.89271 0.85490 1.05177 1.44492 1.03852 1.07417 1.79259 1.18215 0.83191 0.94385 0.90206 1.20779 0.92195 0.98887 1.12774 1.20919 0.94964 0.95741 0.91577 1.19502 0.92307 0.94717 1.17438 1.19934 0.91858 0.95704 0.92287 1.20524 0.95545 0.94831 1.12349 1.20998 0.98051 0.91934 1.03063 1.21543 0.88830 0.92247 0.98449 1.45710 1.11980 1.11804 1.67687 1.18402 0.88574 0.82042 0.75309 1.90755 1.57403 1.48091 1.51572 0.90944 0.77063 0.87324 0.87128 0.75409 0.83974 0.85275 0.83983 0.86075 0.88673 0.90983 0.85722 0.75379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 13.96 21.66 0.30 -53.85 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.96 36.88 27.74 68.60 1.90 38.78 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 7 C -0.33 -18.59 10.16 84.04 0.85 -17.74 16 8 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 9 N -0.58 -25.44 5.09 -306.99 -1.56 -27.00 16 10 C 0.44 18.33 7.85 87.66 0.69 19.01 16 11 O -0.62 -31.58 15.24 -3.06 -0.05 -31.62 16 12 C 0.12 3.28 5.37 85.63 0.46 3.74 16 13 N -0.72 -19.88 5.68 -343.06 -1.95 -21.83 16 14 C 0.25 6.02 6.65 38.49 0.26 6.28 16 15 C -0.22 -5.17 9.28 22.39 0.21 -4.97 16 16 C -0.01 -0.30 9.63 22.45 0.22 -0.08 16 17 C -0.23 -5.58 5.78 -20.10 -0.12 -5.70 16 18 C 0.00 0.07 5.68 -19.68 -0.11 -0.04 16 19 C -0.21 -4.40 9.55 22.33 0.21 -4.19 16 20 C -0.10 -1.08 6.04 29.71 0.18 -0.90 16 21 C 0.11 0.93 7.04 86.37 0.61 1.53 16 22 N -0.72 -10.98 5.58 -467.70 -2.61 -13.59 16 23 C 0.57 13.97 7.78 86.71 0.67 14.64 16 24 O -0.60 -19.37 17.44 -4.02 -0.07 -19.44 16 25 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 26 H 0.39 14.08 5.76 -92.71 -0.53 13.54 16 27 H 0.11 2.50 7.93 -2.38 -0.02 2.48 16 28 H 0.11 2.50 7.93 -2.39 -0.02 2.48 16 29 H 0.41 12.43 7.44 -92.71 -0.69 11.74 16 30 H 0.14 2.78 6.68 -2.91 -0.02 2.76 16 31 H 0.13 3.11 7.84 -2.91 -0.02 3.08 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.12 0.72 8.07 -2.39 -0.02 0.70 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.41 4.89 8.92 -92.71 -0.83 4.06 16 Total: -1.00 -78.70 316.52 -0.40 -79.10 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.96 Total: 37.95 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 4.60 Total: 11.51 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.82 Total: -116.27 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.12 Total: -51.06 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.90 Total: 38.78 kcal Total: -78.70 -0.40 -79.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594714677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.791 kcal (2) G-P(sol) polarization free energy of solvation -78.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds