Wall clock time and date at job start Tue Mar 31 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46930 * 2 1 4 4 C 1.36031 * 119.26047 * 269.72432 * 3 2 1 5 5 C 1.38027 * 119.31046 * 179.71082 * 4 3 2 6 6 C 1.43203 * 120.95229 * 180.28331 * 5 4 3 7 7 N 5.90097 * 105.81775 * 323.31921 * 2 1 3 8 8 C 1.47189 * 118.10046 * 0.54903 * 5 4 3 9 9 O 1.21679 * 120.72972 * 179.71262 * 8 5 4 10 10 N 1.34970 * 118.54677 * 359.73546 * 8 5 4 11 11 C 1.46500 * 119.77671 * 179.97438 * 10 8 5 12 12 C 1.52993 * 109.47227 * 270.44846 * 11 10 8 13 13 C 1.50699 * 115.55240 * 185.75808 * 12 11 10 14 14 H 1.07996 * 120.00446 * 144.37377 * 13 12 11 15 15 C 1.37882 * 119.99702 * 324.37627 * 13 12 11 16 16 N 1.31509 * 120.00145 * 351.22249 * 15 13 12 17 17 Si 1.86803 * 119.99872 * 171.22431 * 15 13 12 18 18 H 1.48501 * 109.47045 * 89.99727 * 17 15 13 19 19 H 1.48499 * 109.47123 * 209.99980 * 17 15 13 20 20 H 1.48496 * 109.47075 * 329.99659 * 17 15 13 21 21 C 1.53007 * 117.49927 * 40.09399 * 12 11 10 22 22 C 1.53004 * 117.50256 * 331.43214 * 12 11 10 23 23 C 1.34237 * 119.26698 * 90.00005 * 3 2 1 24 24 O 1.21566 * 118.93857 * 0.02562 * 23 3 2 25 25 H 1.09007 * 109.46630 * 60.00380 * 1 2 3 26 26 H 1.09001 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47524 * 300.00258 * 1 2 3 28 28 H 1.08999 * 109.47390 * 119.99395 * 2 1 3 29 29 H 1.09002 * 109.47403 * 240.00030 * 2 1 3 30 30 H 1.08001 * 120.34592 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.46968 * 30.45431 * 11 10 8 32 32 H 1.08999 * 109.47126 * 150.44597 * 11 10 8 33 33 H 0.97000 * 120.00232 * 185.00763 * 16 15 13 34 34 H 1.08998 * 117.49743 * 359.97438 * 21 12 11 35 35 H 1.08999 * 117.49815 * 145.01889 * 21 12 11 36 36 H 1.08997 * 117.49816 * 214.98185 * 22 12 11 37 37 H 1.09002 * 117.49152 * 359.97393 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2453 2.0062 -1.1867 5 6 2.6996 3.3096 -1.1880 6 6 2.9444 4.0031 -2.4167 7 7 3.1385 4.5532 -3.3915 8 6 2.9310 3.9644 0.1098 9 8 3.3362 5.1104 0.1645 10 7 2.6844 3.2656 1.2379 11 6 2.9059 3.8908 2.5441 12 6 4.3463 3.6371 2.9932 13 6 4.6855 4.1060 4.3846 14 1 5.3709 3.5362 4.9944 15 6 4.1206 5.2624 4.8793 16 7 3.4255 6.0467 4.0848 17 14 4.3427 5.7152 6.6779 18 1 5.5666 6.5418 6.8328 19 1 3.1622 6.4864 7.1436 20 1 4.4757 4.4772 7.4872 21 6 5.4437 3.7262 1.9307 22 6 5.0291 2.3633 2.4909 23 6 2.2370 2.0000 1.1710 24 8 2.0240 1.3960 2.2043 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0678 1.4894 -2.1183 31 1 2.7330 4.9643 2.4671 32 1 2.2175 3.4633 3.2730 33 1 3.0897 6.8953 4.4134 34 1 5.1394 3.9652 0.9117 35 1 6.4110 4.1236 2.2383 36 1 5.7237 1.8646 3.1668 37 1 4.4518 1.7058 1.8408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594882877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:26 Heat of formation + Delta-G solvation = 11.811622 kcal Electronic energy + Delta-G solvation = -23643.364803 eV Core-core repulsion = 20194.492168 eV Total energy + Delta-G solvation = -3448.872635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.49162 -40.33336 -39.20233 -37.77132 -37.42310 -36.07433 -34.26132 -33.51363 -31.12363 -29.00309 -27.59452 -25.54634 -25.42624 -23.89956 -22.99176 -21.35235 -20.41540 -20.15737 -18.79764 -18.34949 -17.81418 -17.19066 -16.86817 -16.21384 -16.04040 -15.88014 -15.37742 -15.17763 -14.81773 -14.72186 -14.31328 -14.15299 -13.95313 -13.85152 -13.71800 -13.44723 -12.96159 -12.84987 -12.69848 -12.38560 -12.28519 -12.14977 -12.00152 -11.89425 -11.84053 -11.35538 -11.06171 -10.85496 -10.45167 -10.05328 -9.65990 -8.13175 -6.26575 -0.33906 0.76443 0.82741 1.32033 1.42353 1.44318 1.55400 1.87290 2.22773 2.40031 2.60426 2.77439 2.95080 3.29963 3.53037 3.73822 4.05182 4.15463 4.20977 4.26245 4.40053 4.40689 4.51319 4.58787 4.75285 4.78873 4.83554 4.90521 5.05904 5.16287 5.21390 5.33804 5.40013 5.44022 5.54367 5.82692 6.17369 6.28018 6.50820 6.55189 6.71377 6.86285 7.36409 8.87448 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.005949 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.809389 B = 4705.350104 C = 5583.265593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 N -0.513 5.513 4 C 0.300 3.700 5 C -0.246 4.246 6 C 0.315 3.685 7 N -0.458 5.458 8 C 0.550 3.450 9 O -0.536 6.536 10 N -0.549 5.549 11 C 0.164 3.836 12 C 0.019 3.981 13 C -0.512 4.512 14 H 0.060 0.940 15 C 0.023 3.977 16 N -0.906 5.906 17 Si 0.965 3.035 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.203 4.203 22 C -0.178 4.178 23 C 0.682 3.318 24 O -0.547 6.547 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.160 0.840 30 H 0.265 0.735 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.266 0.734 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -16.453 -11.621 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.227 5.227 4 C 0.166 3.834 5 C -0.260 4.260 6 C 0.001 3.999 7 N -0.136 5.136 8 C 0.344 3.656 9 O -0.412 6.412 10 N -0.291 5.291 11 C 0.043 3.957 12 C 0.018 3.982 13 C -0.549 4.549 14 H 0.078 0.922 15 C -0.178 4.178 16 N -0.543 5.543 17 Si 0.790 3.210 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.240 4.240 22 C -0.216 4.216 23 C 0.386 3.614 24 O -0.420 6.420 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.177 0.823 30 H 0.280 0.720 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.587 -15.272 -12.268 21.007 hybrid contribution 0.385 0.885 1.677 1.934 sum -7.202 -14.387 -10.592 19.262 Atomic orbital electron populations 1.22202 0.93319 1.04779 1.02519 1.22568 0.96414 0.75498 1.08041 1.45189 1.57198 1.17199 1.03127 1.23583 0.79357 0.88587 0.91824 1.16925 1.26723 0.96423 0.85973 1.24168 0.91904 0.92770 0.91095 1.81244 1.12054 1.07491 1.12852 1.18648 0.76948 0.85976 0.84027 1.90911 1.44592 1.18636 1.87036 1.46764 1.58615 1.12817 1.10860 1.21405 0.96493 0.99677 0.78084 1.19344 0.89329 0.95988 0.93532 1.20764 1.27287 1.09209 0.97670 0.92163 1.25808 0.94048 0.95846 1.02069 1.69875 1.36838 1.10847 1.36763 0.85443 0.77729 0.78339 0.79536 1.20219 1.20403 1.18991 1.22955 1.01382 1.01132 0.98574 1.22823 1.04590 0.90269 1.03879 1.16133 0.78696 0.81382 0.85180 1.91016 1.55041 1.63594 1.32333 0.89958 0.87934 0.94938 0.88962 0.82261 0.71971 0.86790 0.91603 0.92402 0.91449 0.91510 0.90144 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.23 71.98 0.74 -0.55 16 2 C 0.09 0.75 6.00 86.38 0.52 1.27 16 3 N -0.51 -8.84 2.58 -655.44 -1.69 -10.53 16 4 C 0.30 3.66 10.14 83.99 0.85 4.51 16 5 C -0.25 -6.21 5.92 -19.73 -0.12 -6.33 16 6 C 0.31 8.82 15.12 88.33 1.34 10.15 16 7 N -0.46 -14.60 18.54 19.00 0.35 -14.24 16 8 C 0.55 21.33 6.01 86.56 0.52 21.85 16 9 O -0.54 -26.43 15.23 -4.28 -0.07 -26.49 16 10 N -0.55 -21.74 1.87 -777.09 -1.46 -23.20 16 11 C 0.16 8.18 4.43 86.38 0.38 8.56 16 12 C 0.02 1.00 2.37 -52.93 -0.13 0.88 16 13 C -0.51 -28.82 9.05 25.60 0.23 -28.58 16 14 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 15 C 0.02 1.26 5.28 84.66 0.45 1.71 16 16 N -0.91 -52.40 10.69 21.45 0.23 -52.17 16 17 Si 0.96 43.66 29.55 68.60 2.03 45.69 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 C -0.20 -9.97 9.54 30.62 0.29 -9.68 16 22 C -0.18 -7.99 9.47 30.62 0.29 -7.70 16 23 C 0.68 21.59 6.15 179.34 1.10 22.69 16 24 O -0.55 -20.42 14.79 -3.92 -0.06 -20.48 16 25 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 26 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.09 1.18 7.31 -2.39 -0.02 1.16 16 29 H 0.16 -0.48 8.01 -2.39 -0.02 -0.50 16 30 H 0.26 -0.79 8.04 -2.91 -0.02 -0.81 16 31 H 0.11 6.50 5.29 -2.39 -0.01 6.49 16 32 H 0.07 3.43 7.34 -2.39 -0.02 3.41 16 33 H 0.27 14.65 8.32 -92.71 -0.77 13.88 16 34 H 0.07 3.30 5.22 -2.39 -0.01 3.29 16 35 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.08 3.08 5.57 -2.39 -0.01 3.07 16 Total: -1.00 -82.41 317.93 6.92 -75.49 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.11 Total: 7.16 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.47 Total: 18.78 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -2.57 Total: -100.15 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.12 Total: -46.97 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -82.41 6.92 -75.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.303 kcal (2) G-P(sol) polarization free energy of solvation -82.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds