Wall clock time and date at job start Tue Mar 31 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47093 * 35.88652 * 3 2 1 5 5 N 1.46496 * 109.46942 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00129 * 269.99599 * 5 4 3 7 7 C 1.50709 * 109.47273 * 270.00327 * 6 5 4 8 8 H 1.07999 * 119.99476 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00210 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99914 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46996 * 90.00193 * 11 9 7 13 13 H 1.48502 * 109.46931 * 210.00078 * 11 9 7 14 14 H 1.48498 * 109.47167 * 330.00145 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 5 4 3 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 5 4 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 5 19 19 C 1.38257 * 120.38566 * 269.71784 * 18 17 15 20 20 N 1.31854 * 120.88633 * 179.74720 * 19 18 17 21 21 C 1.31837 * 121.77446 * 0.54556 * 20 19 18 22 22 C 1.38704 * 120.69000 * 359.72268 * 21 20 19 23 23 O 1.35908 * 120.47724 * 179.97438 * 22 21 20 24 24 C 1.38537 * 120.39272 * 89.99859 * 18 17 15 25 25 H 1.08998 * 109.47246 * 275.88745 * 3 2 1 26 26 H 1.08997 * 109.47083 * 155.88040 * 3 2 1 27 27 H 1.08995 * 109.47592 * 59.99506 * 4 3 2 28 28 H 1.09002 * 109.47093 * 299.99814 * 4 3 2 29 29 H 1.09000 * 109.46889 * 29.99981 * 6 5 4 30 30 H 1.09001 * 109.47460 * 150.00590 * 6 5 4 31 31 H 0.97000 * 120.00447 * 179.97438 * 10 9 7 32 32 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 33 33 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 34 34 H 1.07997 * 119.55513 * 0.02852 * 19 18 17 35 35 H 1.08000 * 119.65650 * 179.74780 * 21 20 19 36 36 H 0.96703 * 113.99691 * 270.02286 * 23 22 21 37 37 H 1.07996 * 120.80847 * 359.95483 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1678 -0.8456 5 7 4.5835 -1.1668 -0.8461 6 6 5.3151 -0.4228 -1.8743 7 6 5.5665 -1.3190 -3.0596 8 1 5.2166 -2.3407 -3.0479 9 6 6.2431 -0.8346 -4.1589 10 7 6.6696 0.4094 -4.1730 11 14 6.5553 -1.9456 -5.6278 12 1 5.4247 -1.8316 -6.5838 13 1 7.8148 -1.5359 -6.2994 14 1 6.6746 -3.3525 -5.1678 15 6 5.2582 -1.8503 0.0994 16 8 6.4711 -1.8499 0.0988 17 6 4.5056 -2.6106 1.1609 18 6 5.4857 -3.2767 2.0919 19 6 5.9366 -4.5577 1.8328 20 7 6.7978 -5.1480 2.6381 21 6 7.2552 -4.5528 3.7219 22 6 6.8451 -3.2694 4.0513 23 8 7.3190 -2.6601 5.1700 24 6 5.9411 -2.6148 3.2206 25 1 2.9714 -0.1046 1.0222 26 1 2.9709 0.9387 -0.4199 27 1 2.7551 -1.0627 -1.8678 28 1 2.7556 -2.1060 -0.4257 29 1 4.7253 0.4383 -2.1886 30 1 6.2675 -0.0822 -1.4680 31 1 7.1459 0.7502 -4.9462 32 1 3.8786 -1.9210 1.7262 33 1 3.8793 -3.3683 0.6900 34 1 5.5820 -5.0803 0.9567 35 1 7.9569 -5.0698 4.3597 36 1 6.7848 -2.8185 5.9603 37 1 5.6029 -1.6151 3.4496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596894972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:53 Heat of formation + Delta-G solvation = -17.252354 kcal Electronic energy + Delta-G solvation = -22066.238104 eV Core-core repulsion = 18616.105160 eV Total energy + Delta-G solvation = -3450.132944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59660 -39.22453 -37.36629 -36.89729 -35.32156 -33.65535 -32.82197 -30.89991 -30.59509 -28.64391 -26.75146 -24.09854 -23.63642 -23.29312 -21.92076 -18.80707 -18.12779 -17.67719 -17.00590 -16.92824 -16.61867 -16.47418 -15.74769 -15.16032 -14.78035 -14.55617 -14.24301 -13.79198 -13.49024 -13.37735 -13.21948 -13.01467 -12.58952 -12.49513 -12.47711 -12.29402 -11.96888 -11.72716 -11.31050 -11.30365 -11.01989 -10.89000 -10.64481 -10.21960 -9.77078 -9.73383 -9.46797 -9.15129 -8.75956 -8.49803 -7.91345 -6.11537 -4.16375 0.96484 1.18194 2.67479 2.75968 3.20344 3.27073 3.34805 3.38275 3.49691 3.68111 3.91079 4.19121 4.40060 4.46579 4.67556 4.78827 4.88366 4.95840 5.00349 5.09942 5.12712 5.24481 5.33180 5.41897 5.57774 5.64747 5.78028 5.99235 6.01966 6.14204 6.47948 6.87651 7.30869 7.37014 7.37598 7.52248 7.84156 7.91265 8.13381 8.18414 8.78233 8.92583 9.49472 10.96656 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.004996 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.330846 B = 5602.996926 C = 7349.678296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.116 3.884 5 N -0.596 5.596 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.524 6.524 17 C -0.106 4.106 18 C -0.089 4.089 19 C 0.105 3.895 20 N -0.467 5.467 21 C 0.071 3.929 22 C 0.054 3.946 23 O -0.491 6.491 24 C -0.089 4.089 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.388 0.612 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -5.078 15.758 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.328 5.328 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.294 3.706 16 O -0.399 6.399 17 C -0.147 4.147 18 C -0.092 4.092 19 C -0.052 4.052 20 N -0.176 5.176 21 C -0.087 4.087 22 C 0.007 3.993 23 O -0.300 6.300 24 C -0.116 4.116 25 H 0.124 0.876 26 H 0.135 0.865 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.244 0.756 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.131 -5.556 15.064 17.186 hybrid contribution 0.004 0.328 -0.431 0.541 sum -6.126 -5.228 14.633 16.703 Atomic orbital electron populations 1.81218 1.13054 1.08879 1.09048 1.29099 0.95093 0.93039 0.92930 1.19905 0.81349 1.04026 1.03949 1.21329 0.82184 0.96048 1.01454 1.48217 1.04830 1.50327 1.29446 1.19363 0.92616 0.91006 0.84404 1.21402 1.36899 0.98306 1.00214 0.92341 1.24913 0.95239 0.95149 0.98641 1.69915 1.38243 1.14529 1.30534 0.86519 0.77732 0.80971 0.82353 1.20626 1.21098 1.19846 1.20131 0.88118 0.80195 0.82160 1.90742 1.13689 1.61310 1.74179 1.20805 0.97369 1.00610 0.95921 1.20321 0.98635 0.95268 0.94939 1.22675 0.92755 0.92208 0.97543 1.67696 1.09517 1.36855 1.03501 1.23071 0.98874 0.91548 0.95187 1.19460 0.96707 0.92534 0.90573 1.84883 1.53709 1.73606 1.17782 1.21754 0.95209 1.00095 0.94515 0.87635 0.86452 0.88646 0.90515 0.94680 0.93581 0.92640 0.88174 0.87662 0.82489 0.82572 0.75625 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.18 18.54 42.15 0.78 -5.39 16 2 C 0.22 2.40 15.43 -20.76 -0.32 2.08 16 3 C -0.05 -0.47 6.02 -29.52 -0.18 -0.65 16 4 C 0.12 1.40 5.16 -4.04 -0.02 1.38 16 5 N -0.60 -10.24 2.46 -175.06 -0.43 -10.67 16 6 C 0.24 5.64 5.16 -5.19 -0.03 5.61 16 7 C -0.53 -13.88 9.39 -34.44 -0.32 -14.20 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 11 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.51 8.77 7.67 -10.98 -0.08 8.68 16 16 O -0.52 -11.92 15.61 5.55 0.09 -11.83 16 17 C -0.11 -1.21 4.41 -29.03 -0.13 -1.34 16 18 C -0.09 -1.14 4.39 -104.50 -0.46 -1.60 16 19 C 0.11 1.44 10.85 -17.53 -0.19 1.24 16 20 N -0.47 -6.64 10.36 -13.13 -0.14 -6.77 16 21 C 0.07 0.88 11.14 -17.38 -0.19 0.68 16 22 C 0.05 0.64 6.74 -39.08 -0.26 0.37 16 23 O -0.49 -4.86 13.53 -19.45 -0.26 -5.13 16 24 C -0.09 -1.09 9.81 -39.14 -0.38 -1.47 16 25 H 0.11 0.74 7.20 -51.93 -0.37 0.36 16 26 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 28 H 0.08 0.72 6.45 -51.93 -0.34 0.38 16 29 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.10 0.81 7.11 -51.92 -0.37 0.44 16 33 H 0.11 0.96 7.36 -51.93 -0.38 0.58 16 34 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.39 1.66 9.06 45.56 0.41 2.08 16 37 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -35.80 335.44 -5.37 -41.17 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.51 Total: -0.30 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.67 Total: 2.41 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.95 Total: -47.45 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.18 Total: -16.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.80 -5.37 -41.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596894972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.913 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds