Wall clock time and date at job start Tue Mar 31 2020 02:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47093 * 35.88652 * 3 2 1 5 5 N 1.46496 * 109.46942 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00129 * 269.99599 * 5 4 3 7 7 C 1.50709 * 109.47273 * 270.00327 * 6 5 4 8 8 H 1.07999 * 119.99476 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00210 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99914 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46996 * 90.00193 * 11 9 7 13 13 H 1.48502 * 109.46931 * 210.00078 * 11 9 7 14 14 H 1.48498 * 109.47167 * 330.00145 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 5 4 3 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 5 4 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 5 19 19 C 1.38257 * 120.38566 * 269.71784 * 18 17 15 20 20 N 1.31854 * 120.88633 * 179.74720 * 19 18 17 21 21 C 1.31837 * 121.77446 * 0.54556 * 20 19 18 22 22 C 1.38704 * 120.69000 * 359.72268 * 21 20 19 23 23 O 1.35908 * 120.47724 * 179.97438 * 22 21 20 24 24 C 1.38537 * 120.39272 * 89.99859 * 18 17 15 25 25 H 1.08998 * 109.47246 * 275.88745 * 3 2 1 26 26 H 1.08997 * 109.47083 * 155.88040 * 3 2 1 27 27 H 1.08995 * 109.47592 * 59.99506 * 4 3 2 28 28 H 1.09002 * 109.47093 * 299.99814 * 4 3 2 29 29 H 1.09000 * 109.46889 * 29.99981 * 6 5 4 30 30 H 1.09001 * 109.47460 * 150.00590 * 6 5 4 31 31 H 0.97000 * 120.00447 * 179.97438 * 10 9 7 32 32 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 33 33 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 34 34 H 1.07997 * 119.55513 * 0.02852 * 19 18 17 35 35 H 1.08000 * 119.65650 * 179.74780 * 21 20 19 36 36 H 0.96703 * 113.99691 * 270.02286 * 23 22 21 37 37 H 1.07996 * 120.80847 * 359.95483 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1678 -0.8456 5 7 4.5835 -1.1668 -0.8461 6 6 5.3151 -0.4228 -1.8743 7 6 5.5665 -1.3190 -3.0596 8 1 5.2166 -2.3407 -3.0479 9 6 6.2431 -0.8346 -4.1589 10 7 6.6696 0.4094 -4.1730 11 14 6.5553 -1.9456 -5.6278 12 1 5.4247 -1.8316 -6.5838 13 1 7.8148 -1.5359 -6.2994 14 1 6.6746 -3.3525 -5.1678 15 6 5.2582 -1.8503 0.0994 16 8 6.4711 -1.8499 0.0988 17 6 4.5056 -2.6106 1.1609 18 6 5.4857 -3.2767 2.0919 19 6 5.9366 -4.5577 1.8328 20 7 6.7978 -5.1480 2.6381 21 6 7.2552 -4.5528 3.7219 22 6 6.8451 -3.2694 4.0513 23 8 7.3190 -2.6601 5.1700 24 6 5.9411 -2.6148 3.2206 25 1 2.9714 -0.1046 1.0222 26 1 2.9709 0.9387 -0.4199 27 1 2.7551 -1.0627 -1.8678 28 1 2.7556 -2.1060 -0.4257 29 1 4.7253 0.4383 -2.1886 30 1 6.2675 -0.0822 -1.4680 31 1 7.1459 0.7502 -4.9462 32 1 3.8786 -1.9210 1.7262 33 1 3.8793 -3.3683 0.6900 34 1 5.5820 -5.0803 0.9567 35 1 7.9569 -5.0698 4.3597 36 1 6.7848 -2.8185 5.9603 37 1 5.6029 -1.6151 3.4496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596894972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:52 Heat of formation + Delta-G solvation = -43.666432 kcal Electronic energy + Delta-G solvation = -22067.383504 eV Core-core repulsion = 18616.105160 eV Total energy + Delta-G solvation = -3451.278344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56261 -40.48833 -38.20246 -37.91866 -36.65520 -34.98124 -34.41213 -32.11743 -31.50393 -29.94933 -28.23686 -25.27847 -24.90712 -24.46823 -23.06774 -20.03598 -19.01203 -18.78645 -18.29789 -17.91993 -17.84436 -17.81823 -17.07249 -16.35308 -15.99369 -15.77799 -15.59186 -14.83103 -14.51223 -14.41313 -14.33142 -14.13819 -14.02173 -13.58057 -13.49851 -13.44417 -13.14139 -13.04731 -12.84650 -12.68213 -12.48220 -12.18520 -12.12966 -11.76617 -11.65068 -10.83311 -10.57244 -10.46325 -10.32901 -9.72426 -9.44250 -8.16983 -6.28772 0.05282 0.26554 1.39841 1.42773 1.51534 1.73138 1.89153 1.94383 2.31192 2.45710 2.75559 3.09424 3.14576 3.23599 3.58204 3.75283 3.92888 3.95155 4.06795 4.15623 4.17926 4.25066 4.51432 4.62880 4.74946 4.80927 4.90092 5.10986 5.11138 5.17183 5.23301 5.37136 5.63418 5.64607 5.90324 6.14807 6.65704 6.76843 6.78095 6.84937 6.99773 7.36642 7.55861 8.89644 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.004996 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.330846 B = 5602.996926 C = 7349.678296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.247 3.753 3 C -0.039 4.039 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.259 3.741 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.955 3.045 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.504 3.496 16 O -0.589 6.589 17 C -0.092 4.092 18 C -0.098 4.098 19 C 0.084 3.916 20 N -0.492 5.492 21 C 0.058 3.942 22 C 0.058 3.942 23 O -0.499 6.499 24 C -0.098 4.098 25 H 0.142 0.858 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.034 0.966 30 H 0.001 0.999 31 H 0.264 0.736 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.164 0.836 35 H 0.175 0.825 36 H 0.414 0.586 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.406 -5.697 17.009 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.070 4.070 3 C -0.080 4.080 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.138 3.862 7 C -0.576 4.576 8 H 0.074 0.926 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.781 3.219 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.199 1.199 15 C 0.293 3.707 16 O -0.469 6.469 17 C -0.132 4.132 18 C -0.100 4.100 19 C -0.073 4.073 20 N -0.202 5.202 21 C -0.099 4.099 22 C 0.011 3.989 23 O -0.311 6.311 24 C -0.124 4.124 25 H 0.159 0.841 26 H 0.135 0.865 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.052 0.948 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.273 0.727 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.657 -6.188 16.345 19.081 hybrid contribution 0.508 0.535 -0.731 1.038 sum -7.150 -5.653 15.614 18.080 Atomic orbital electron populations 1.81268 1.14536 1.10393 1.10812 1.29167 0.94948 0.91577 0.91352 1.19861 0.79961 1.02758 1.05419 1.21579 0.78785 0.99085 1.01889 1.48070 1.06840 1.49614 1.28157 1.18782 0.91460 0.91140 0.84804 1.21778 1.36185 0.98477 1.01207 0.92646 1.25709 0.95329 0.96370 1.01435 1.70022 1.39315 1.16071 1.31322 0.85594 0.77797 0.79008 0.79500 1.19132 1.21290 1.19865 1.21133 0.87655 0.79345 0.82575 1.90718 1.16828 1.63448 1.75867 1.20838 0.96866 1.01327 0.94143 1.20462 0.99113 0.95040 0.95415 1.22915 0.93272 0.93129 0.97968 1.67670 1.10269 1.37873 1.04386 1.23428 0.99209 0.92229 0.95075 1.19495 0.96063 0.92216 0.91146 1.84820 1.54549 1.73325 1.18391 1.22065 0.95144 1.00865 0.94350 0.84075 0.86486 0.89995 0.86766 0.94764 0.98081 0.92676 0.83714 0.84684 0.81927 0.80765 0.72663 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.64 18.54 20.00 0.37 -12.27 16 2 C 0.25 4.74 15.43 89.44 1.38 6.12 16 3 C -0.04 -0.59 6.02 28.79 0.17 -0.41 16 4 C 0.11 2.34 5.16 86.38 0.45 2.78 16 5 N -0.60 -19.70 2.46 -826.15 -2.03 -21.73 16 6 C 0.26 12.16 5.16 85.64 0.44 12.60 16 7 C -0.54 -28.50 9.39 25.60 0.24 -28.26 16 8 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.93 -53.66 13.29 21.45 0.28 -53.38 16 11 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 C 0.50 16.67 7.67 87.66 0.67 17.34 16 16 O -0.59 -27.14 15.61 -3.04 -0.05 -27.18 16 17 C -0.09 -1.76 4.41 29.10 0.13 -1.64 16 18 C -0.10 -2.30 4.39 -19.79 -0.09 -2.39 16 19 C 0.08 2.21 10.85 84.69 0.92 3.13 16 20 N -0.49 -13.77 10.36 -195.44 -2.02 -15.79 16 21 C 0.06 1.38 11.14 84.80 0.94 2.33 16 22 C 0.06 1.26 6.74 22.60 0.15 1.41 16 23 O -0.50 -8.72 13.53 -92.52 -1.25 -9.98 16 24 C -0.10 -2.16 9.81 22.56 0.22 -1.93 16 25 H 0.14 1.21 7.20 -2.39 -0.02 1.20 16 26 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 1.99 8.07 -2.39 -0.02 1.97 16 28 H 0.11 1.59 6.45 -2.39 -0.02 1.58 16 29 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.15 1.49 7.11 -2.38 -0.02 1.47 16 33 H 0.14 1.84 7.36 -2.39 -0.02 1.82 16 34 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.18 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.41 2.40 9.06 -74.06 -0.67 1.73 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -81.67 335.44 3.87 -77.80 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.44 Total: 4.90 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.09 Total: 12.12 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.40 Total: -103.17 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -1.30 Total: -37.16 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -81.67 3.87 -77.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596894972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.132 kcal (2) G-P(sol) polarization free energy of solvation -81.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds