Wall clock time and date at job start Tue Mar 31 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00238 * 2 1 4 4 H 1.48499 * 109.46905 * 270.00067 * 3 2 1 5 5 H 1.48501 * 109.46980 * 30.00208 * 3 2 1 6 6 H 1.48497 * 109.47025 * 150.00059 * 3 2 1 7 7 C 1.37878 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99857 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99921 * 89.99994 * 10 9 7 12 12 C 1.50690 * 109.47370 * 269.99928 * 11 10 9 13 13 C 1.38682 * 120.41929 * 269.72479 * 12 11 10 14 14 C 1.38625 * 118.41677 * 180.27483 * 13 12 11 15 15 C 1.38221 * 119.16809 * 0.02562 * 14 13 12 16 16 N 1.31860 * 120.76138 * 359.97438 * 15 14 13 17 17 C 1.31881 * 121.72574 * 359.97438 * 16 15 14 18 18 C 1.34775 * 120.00150 * 269.99846 * 10 9 7 19 19 O 1.21286 * 120.00211 * 180.02562 * 18 10 9 20 20 C 1.50699 * 120.00053 * 0.02562 * 18 10 9 21 21 H 1.09007 * 112.41593 * 310.32903 * 20 18 10 22 22 C 1.52883 * 113.05440 * 79.81407 * 20 18 10 23 23 C 1.50375 * 82.51769 * 115.45085 * 22 20 18 24 24 O 1.21280 * 131.83441 * 179.97438 * 23 22 20 25 25 N 1.34601 * 96.31789 * 359.96923 * 23 22 20 26 26 H 0.96995 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47236 * 59.99909 * 9 7 2 28 28 H 1.08998 * 109.47240 * 299.99940 * 9 7 2 29 29 H 1.08999 * 109.46913 * 149.99850 * 11 10 9 30 30 H 1.09002 * 109.47149 * 30.00368 * 11 10 9 31 31 H 1.07993 * 120.78870 * 0.26805 * 13 12 11 32 32 H 1.08004 * 120.41579 * 180.02562 * 14 13 12 33 33 H 1.07994 * 119.62350 * 179.97438 * 15 14 13 34 34 H 1.08003 * 119.62232 * 180.02562 * 17 16 15 35 35 H 1.09000 * 114.37486 * 228.85524 * 22 20 18 36 36 H 1.08997 * 114.37666 * 2.05282 * 22 20 18 37 37 H 0.97002 * 134.67090 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.6800 -4.1700 1.2664 12 6 3.9234 -3.4379 1.7008 13 6 5.1756 -3.8870 1.3091 14 6 6.2918 -3.1853 1.7373 15 6 6.1210 -2.0696 2.5352 16 7 4.9146 -1.6713 2.8883 17 6 3.8306 -2.3136 2.4988 18 6 2.6400 -4.1244 -1.1695 19 8 3.4278 -5.0465 -1.1705 20 6 2.1498 -3.5507 -2.4740 21 1 1.0638 -3.4622 -2.5072 22 6 2.8679 -2.2598 -2.8678 23 6 3.3473 -3.1078 -4.0133 24 8 4.0708 -2.8613 -4.9550 25 7 2.7053 -4.2319 -3.6444 26 1 -0.4849 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.9082 -5.2277 1.1354 30 1 1.9071 -4.0565 2.0266 31 1 5.2787 -4.7626 0.6854 32 1 7.2825 -3.5063 1.4511 33 1 6.9855 -1.5177 2.8733 34 1 2.8590 -1.9572 2.8078 35 1 2.2034 -1.4460 -3.1582 36 1 3.6528 -1.9528 -2.1766 37 1 2.6379 -5.1291 -4.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596964831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:11 Heat of formation + Delta-G solvation = 1.527060 kcal Electronic energy + Delta-G solvation = -23483.862248 eV Core-core repulsion = 20034.543641 eV Total energy + Delta-G solvation = -3449.318607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.02537 -39.81779 -38.48688 -36.01993 -35.35745 -33.03856 -32.09752 -31.26048 -28.84047 -27.66013 -26.64348 -24.49511 -23.24513 -22.91998 -21.72365 -19.71483 -18.84179 -17.21423 -17.05011 -16.70881 -16.45815 -16.21589 -15.81479 -15.26691 -15.05470 -14.77583 -14.14351 -13.97036 -13.34897 -13.02990 -12.78910 -12.68248 -12.60567 -12.43027 -11.91336 -11.84537 -11.76217 -11.39767 -11.37371 -10.95411 -10.80778 -10.30402 -9.91090 -9.81178 -9.70298 -9.43176 -9.08710 -8.87417 -8.70060 -8.48755 -7.98333 -6.28999 -4.35981 1.46089 1.68666 2.79152 2.97104 3.20239 3.29226 3.32805 3.39135 3.86983 4.26414 4.28395 4.32517 4.83019 4.95652 5.00146 5.06273 5.16128 5.26056 5.35047 5.39079 5.45735 5.64856 5.93605 6.00385 6.12797 6.17469 6.20164 6.44696 6.47614 6.49145 6.69145 6.96472 7.10149 7.19489 7.27445 7.65282 7.90032 8.02418 8.38387 8.50765 8.61709 8.75851 9.33331 10.77465 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.008694 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.264047 B = 3219.895692 C = 4572.356980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.233 3.767 10 N -0.584 5.584 11 C 0.164 3.836 12 C -0.145 4.145 13 C -0.058 4.058 14 C -0.187 4.187 15 C 0.092 3.908 16 N -0.491 5.491 17 C 0.140 3.860 18 C 0.513 3.487 19 O -0.561 6.561 20 C 0.114 3.886 21 H 0.121 0.879 22 C -0.134 4.134 23 C 0.519 3.481 24 O -0.530 6.530 25 N -0.720 5.720 26 H 0.266 0.734 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -6.593 2.176 7.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.113 3.887 10 N -0.314 5.314 11 C 0.041 3.959 12 C -0.148 4.148 13 C -0.085 4.085 14 C -0.207 4.207 15 C -0.065 4.065 16 N -0.199 5.199 17 C -0.017 4.017 18 C 0.299 3.701 19 O -0.441 6.441 20 C 0.006 3.994 21 H 0.138 0.862 22 C -0.174 4.174 23 C 0.305 3.695 24 O -0.405 6.405 25 N -0.381 5.381 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.496 -6.115 2.182 7.374 hybrid contribution 0.404 -0.080 -0.633 0.755 sum 3.899 -6.195 1.549 7.482 Atomic orbital electron populations 1.69895 1.05946 1.27476 1.49263 1.24835 0.94685 0.99036 0.94511 0.86665 0.80345 0.83284 0.78472 1.20379 1.21113 1.19442 1.21360 0.93446 0.89916 1.52487 0.92015 1.19606 0.87288 0.82708 0.99052 1.48287 1.44443 1.35126 1.03569 1.20144 0.92843 0.96688 0.86267 1.21204 0.95927 0.98409 0.99240 1.21571 0.91927 0.99032 0.95974 1.22030 0.99485 0.98094 1.01088 1.22657 0.95164 0.93990 0.94730 1.67710 0.98877 1.30464 1.22871 1.22733 0.97193 0.89721 0.92092 1.20420 0.81322 0.82755 0.85642 1.90617 1.35610 1.30210 1.87666 1.21938 1.01149 0.91221 0.85141 0.86175 1.23286 1.01617 0.96871 0.95643 1.22246 0.78016 0.83722 0.85557 1.90684 1.37287 1.79452 1.33072 1.47616 1.51149 1.13237 1.26050 0.92424 0.94182 0.94186 0.89982 0.89489 0.84935 0.85593 0.83606 0.82422 0.84998 0.85841 0.74191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.88 13.29 55.43 0.74 -21.14 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 19.44 29.54 -169.99 -5.02 14.42 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -11.67 7.55 -34.44 -0.26 -11.93 16 8 H 0.06 1.44 7.48 -52.49 -0.39 1.05 16 9 C 0.23 4.52 4.96 -5.20 -0.03 4.50 16 10 N -0.58 -10.11 2.44 -176.44 -0.43 -10.54 16 11 C 0.16 2.55 5.60 -5.20 -0.03 2.52 16 12 C -0.14 -2.37 5.48 -104.48 -0.57 -2.94 16 13 C -0.06 -0.92 9.86 -39.27 -0.39 -1.31 16 14 C -0.19 -2.70 10.11 -39.44 -0.40 -3.10 16 15 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 16 N -0.49 -8.76 10.36 -13.25 -0.14 -8.89 16 17 C 0.14 2.44 10.07 -17.55 -0.18 2.26 16 18 C 0.51 8.98 7.14 -10.99 -0.08 8.91 16 19 O -0.56 -10.82 15.86 5.55 0.09 -10.73 16 20 C 0.11 1.79 3.58 -81.48 -0.29 1.50 16 21 H 0.12 1.70 6.97 -51.92 -0.36 1.34 16 22 C -0.13 -2.20 6.92 -28.10 -0.19 -2.40 16 23 C 0.52 9.12 9.37 -23.49 -0.22 8.90 16 24 O -0.53 -11.03 18.03 5.56 0.10 -10.93 16 25 N -0.72 -10.94 7.07 -77.63 -0.55 -11.49 16 26 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 27 H 0.04 0.79 6.22 -51.93 -0.32 0.47 16 28 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 29 H 0.08 1.23 7.37 -51.93 -0.38 0.85 16 30 H 0.09 1.21 7.85 -51.93 -0.41 0.80 16 31 H 0.13 2.08 7.70 -52.49 -0.40 1.68 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.16 2.74 8.06 -52.48 -0.42 2.31 16 35 H 0.13 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.12 2.20 7.72 -51.93 -0.40 1.80 16 37 H 0.41 5.46 8.96 -40.82 -0.37 5.09 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -28.67 323.98 -7.53 -36.20 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.27 Total: 8.49 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -2.93 Total: 9.74 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.38 Total: -52.07 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.19 Total: -21.66 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.67 -7.53 -36.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.728 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds