Wall clock time and date at job start Tue Mar 31 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00160 * 270.00206 * 10 9 7 12 12 C 1.50700 * 109.47477 * 90.00012 * 11 10 9 13 13 C 1.38669 * 120.42046 * 89.99876 * 12 11 10 14 14 C 1.38631 * 118.42061 * 180.02562 * 13 12 11 15 15 C 1.38220 * 119.15906 * 359.97438 * 14 13 12 16 16 N 1.31860 * 120.76720 * 0.02562 * 15 14 13 17 17 C 1.31887 * 121.72332 * 359.70793 * 16 15 14 18 18 C 1.34780 * 119.99807 * 89.99947 * 10 9 7 19 19 O 1.21283 * 119.99668 * 180.02562 * 18 10 9 20 20 C 1.50701 * 120.00140 * 0.02562 * 18 10 9 21 21 H 1.09001 * 112.41456 * 50.02367 * 20 18 10 22 22 C 1.52879 * 113.05146 * 280.62494 * 20 18 10 23 23 C 1.50570 * 82.45375 * 244.54572 * 22 20 18 24 24 O 1.21283 * 131.84591 * 179.97438 * 23 22 20 25 25 N 1.34598 * 96.30648 * 0.02562 * 23 22 20 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09004 * 109.47352 * 209.99756 * 11 10 9 30 30 H 1.08995 * 109.47003 * 329.99670 * 11 10 9 31 31 H 1.07995 * 120.78796 * 0.02562 * 13 12 11 32 32 H 1.07999 * 120.41629 * 179.97438 * 14 13 12 33 33 H 1.08006 * 119.61924 * 180.02562 * 15 14 13 34 34 H 1.07998 * 119.61346 * 180.31145 * 17 16 15 35 35 H 1.09006 * 114.37912 * 357.94059 * 22 20 18 36 36 H 1.08991 * 114.38322 * 131.14880 * 22 20 18 37 37 H 0.97000 * 134.66767 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2692 12 6 3.9222 -3.4371 -1.7043 13 6 5.1744 -3.8831 -1.3090 14 6 6.2900 -3.1777 -1.7327 15 6 6.1185 -2.0616 -2.5298 16 7 4.9121 -1.6664 -2.8864 17 6 3.8290 -2.3158 -2.5063 18 6 2.6409 -4.1249 1.1667 19 8 3.4294 -5.0464 1.1667 20 6 2.1508 -3.5525 2.4718 21 1 1.0645 -3.4706 2.5079 22 6 2.8607 -2.2556 2.8608 23 6 3.3499 -3.1004 4.0072 24 8 4.0752 -2.8484 4.9461 25 7 2.7142 -4.2288 3.6411 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.9074 -5.2273 -1.1389 30 1 1.9057 -4.0556 -2.0288 31 1 5.2779 -4.7591 -0.6859 32 1 7.2807 -3.4963 -1.4436 33 1 6.9826 -1.5068 -2.8645 34 1 2.8578 -1.9649 -2.8225 35 1 3.6411 -1.9441 2.1665 36 1 2.1914 -1.4462 3.1520 37 1 2.6534 -5.1260 4.0050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596964832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:14 Heat of formation + Delta-G solvation = 1.497197 kcal Electronic energy + Delta-G solvation = -23488.319314 eV Core-core repulsion = 20038.999412 eV Total energy + Delta-G solvation = -3449.319902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = -0.12 seconds Orbital eigenvalues (eV) -41.01735 -39.81608 -38.48416 -36.01749 -35.35786 -33.03784 -32.09636 -31.26051 -28.83953 -27.65629 -26.63914 -24.49148 -23.24651 -22.91796 -21.72301 -19.71541 -18.84060 -17.21293 -17.04831 -16.70728 -16.45876 -16.21347 -15.81467 -15.26480 -15.05560 -14.77349 -14.14022 -13.97119 -13.34751 -13.02979 -12.78925 -12.68143 -12.60381 -12.42946 -11.91319 -11.84516 -11.75871 -11.39729 -11.37268 -10.95378 -10.80790 -10.30292 -9.91042 -9.81127 -9.69803 -9.43145 -9.08570 -8.87373 -8.69970 -8.48695 -7.98376 -6.28980 -4.35911 1.46168 1.68747 2.79373 2.97301 3.20273 3.29265 3.32842 3.39142 3.86968 4.26457 4.28092 4.32500 4.83023 4.95722 5.00228 5.06289 5.16254 5.25977 5.35178 5.39154 5.45780 5.64909 5.93617 6.00450 6.13164 6.18082 6.20111 6.44749 6.47699 6.49215 6.69171 6.96462 7.10140 7.19592 7.27505 7.65281 7.90074 8.02452 8.38434 8.50892 8.61728 8.75865 9.33351 10.77470 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010392 B = 0.008706 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.828396 B = 3215.348563 C = 4564.083111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.285 1.285 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.233 3.767 10 N -0.584 5.584 11 C 0.164 3.836 12 C -0.145 4.145 13 C -0.059 4.059 14 C -0.187 4.187 15 C 0.091 3.909 16 N -0.491 5.491 17 C 0.140 3.860 18 C 0.513 3.487 19 O -0.561 6.561 20 C 0.114 3.886 21 H 0.121 0.879 22 C -0.133 4.133 23 C 0.518 3.482 24 O -0.530 6.530 25 N -0.720 5.720 26 H 0.266 0.734 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 -6.611 -2.179 7.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.211 1.211 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.114 3.886 10 N -0.314 5.314 11 C 0.041 3.959 12 C -0.148 4.148 13 C -0.085 4.085 14 C -0.207 4.207 15 C -0.065 4.065 16 N -0.199 5.199 17 C -0.018 4.018 18 C 0.299 3.701 19 O -0.441 6.441 20 C 0.005 3.995 21 H 0.138 0.862 22 C -0.174 4.174 23 C 0.304 3.696 24 O -0.405 6.405 25 N -0.380 5.380 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.175 0.825 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.487 -6.127 -2.183 7.380 hybrid contribution 0.406 -0.081 0.635 0.758 sum 3.893 -6.208 -1.548 7.490 Atomic orbital electron populations 1.69898 1.05945 1.27473 1.49262 1.24836 0.94687 0.99037 0.94512 0.86665 0.80345 0.83282 0.78472 1.20379 1.19441 1.21113 1.21360 0.93441 0.89917 1.52485 0.92021 1.19606 0.87287 0.82706 0.99050 1.48287 1.44446 1.35130 1.03567 1.20142 0.92853 0.96690 0.86253 1.21201 0.95927 0.98449 0.99194 1.21569 0.91930 0.99017 0.95990 1.22031 0.99492 0.98084 1.01075 1.22658 0.95154 0.94021 0.94716 1.67710 0.98890 1.30381 1.22918 1.22728 0.97178 0.89661 0.92188 1.20424 0.81324 0.82742 0.85649 1.90615 1.35575 1.30241 1.87666 1.21931 1.01070 0.91314 0.85145 0.86191 1.23323 1.01617 0.96783 0.95650 1.22307 0.78053 0.83711 0.85519 1.90684 1.37184 1.79386 1.33236 1.47609 1.51173 1.13067 1.26190 0.92426 0.94184 0.94187 0.89985 0.89492 0.84935 0.85592 0.83608 0.82451 0.85820 0.85009 0.74186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.88 13.29 55.43 0.74 -21.14 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -11.68 7.51 -34.44 -0.26 -11.93 16 8 H 0.06 1.44 7.46 -52.49 -0.39 1.05 16 9 C 0.23 4.52 4.96 -5.20 -0.03 4.50 16 10 N -0.58 -10.11 2.44 -176.44 -0.43 -10.54 16 11 C 0.16 2.55 5.60 -5.20 -0.03 2.52 16 12 C -0.14 -2.37 5.48 -104.48 -0.57 -2.94 16 13 C -0.06 -0.92 9.86 -39.28 -0.39 -1.31 16 14 C -0.19 -2.70 10.11 -39.44 -0.40 -3.10 16 15 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 16 N -0.49 -8.76 10.36 -13.25 -0.14 -8.89 16 17 C 0.14 2.44 10.11 -17.55 -0.18 2.26 16 18 C 0.51 8.99 7.14 -10.98 -0.08 8.91 16 19 O -0.56 -10.81 15.85 5.56 0.09 -10.73 16 20 C 0.11 1.79 3.57 -81.49 -0.29 1.50 16 21 H 0.12 1.70 6.99 -51.93 -0.36 1.34 16 22 C -0.13 -2.20 6.89 -28.01 -0.19 -2.39 16 23 C 0.52 9.12 9.38 -23.40 -0.22 8.91 16 24 O -0.53 -11.04 18.03 5.55 0.10 -10.94 16 25 N -0.72 -10.95 7.07 -77.56 -0.55 -11.50 16 26 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 27 H 0.04 0.79 6.23 -51.92 -0.32 0.47 16 28 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 29 H 0.08 1.23 7.38 -51.93 -0.38 0.84 16 30 H 0.09 1.20 7.84 -51.93 -0.41 0.80 16 31 H 0.13 2.08 7.69 -52.49 -0.40 1.68 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.15 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.16 2.72 8.06 -52.49 -0.42 2.30 16 35 H 0.12 2.21 7.65 -51.93 -0.40 1.81 16 36 H 0.13 2.05 8.14 -51.93 -0.42 1.63 16 37 H 0.41 5.46 8.96 -40.82 -0.37 5.10 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -28.68 323.85 -7.53 -36.21 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.27 Total: 8.48 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -2.92 Total: 9.74 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.38 Total: -52.08 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.19 Total: -21.67 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.68 -7.53 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.705 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.12 seconds