Wall clock time and date at job start Tue Mar 31 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00160 * 270.00206 * 10 9 7 12 12 C 1.50700 * 109.47477 * 90.00012 * 11 10 9 13 13 C 1.38669 * 120.42046 * 89.99876 * 12 11 10 14 14 C 1.38631 * 118.42061 * 180.02562 * 13 12 11 15 15 C 1.38220 * 119.15906 * 359.97438 * 14 13 12 16 16 N 1.31860 * 120.76720 * 0.02562 * 15 14 13 17 17 C 1.31887 * 121.72332 * 359.70793 * 16 15 14 18 18 C 1.34780 * 119.99807 * 89.99947 * 10 9 7 19 19 O 1.21283 * 119.99668 * 180.02562 * 18 10 9 20 20 C 1.50701 * 120.00140 * 0.02562 * 18 10 9 21 21 H 1.09001 * 112.41456 * 50.02367 * 20 18 10 22 22 C 1.52879 * 113.05146 * 280.62494 * 20 18 10 23 23 C 1.50570 * 82.45375 * 244.54572 * 22 20 18 24 24 O 1.21283 * 131.84591 * 179.97438 * 23 22 20 25 25 N 1.34598 * 96.30648 * 0.02562 * 23 22 20 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09004 * 109.47352 * 209.99756 * 11 10 9 30 30 H 1.08995 * 109.47003 * 329.99670 * 11 10 9 31 31 H 1.07995 * 120.78796 * 0.02562 * 13 12 11 32 32 H 1.07999 * 120.41629 * 179.97438 * 14 13 12 33 33 H 1.08006 * 119.61924 * 180.02562 * 15 14 13 34 34 H 1.07998 * 119.61346 * 180.31145 * 17 16 15 35 35 H 1.09006 * 114.37912 * 357.94059 * 22 20 18 36 36 H 1.08991 * 114.38322 * 131.14880 * 22 20 18 37 37 H 0.97000 * 134.66767 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2692 12 6 3.9222 -3.4371 -1.7043 13 6 5.1744 -3.8831 -1.3090 14 6 6.2900 -3.1777 -1.7327 15 6 6.1185 -2.0616 -2.5298 16 7 4.9121 -1.6664 -2.8864 17 6 3.8290 -2.3158 -2.5063 18 6 2.6409 -4.1249 1.1667 19 8 3.4294 -5.0464 1.1667 20 6 2.1508 -3.5525 2.4718 21 1 1.0645 -3.4706 2.5079 22 6 2.8607 -2.2556 2.8608 23 6 3.3499 -3.1004 4.0072 24 8 4.0752 -2.8484 4.9461 25 7 2.7142 -4.2288 3.6411 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.9074 -5.2273 -1.1389 30 1 1.9057 -4.0556 -2.0288 31 1 5.2779 -4.7591 -0.6859 32 1 7.2807 -3.4963 -1.4436 33 1 6.9826 -1.5068 -2.8645 34 1 2.8578 -1.9649 -2.8225 35 1 3.6411 -1.9441 2.1665 36 1 2.1914 -1.4462 3.1520 37 1 2.6534 -5.1260 4.0050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596964832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:13 Heat of formation + Delta-G solvation = -18.070504 kcal Electronic energy + Delta-G solvation = -23489.167833 eV Core-core repulsion = 20038.999412 eV Total energy + Delta-G solvation = -3450.168421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.39006 -41.08246 -39.89413 -37.46253 -36.83945 -34.67593 -33.49739 -32.51406 -30.15667 -29.25829 -28.01161 -25.85484 -24.77269 -24.30037 -22.97888 -21.07488 -20.22509 -18.71709 -18.47664 -18.10731 -17.92091 -17.58861 -17.09697 -16.61845 -16.49938 -16.34212 -15.66255 -15.31191 -14.65104 -14.34813 -14.30280 -14.10271 -13.99009 -13.84670 -13.42289 -13.27035 -13.10028 -12.95604 -12.77853 -12.59849 -12.36975 -11.98494 -11.60223 -11.28543 -11.13765 -10.69774 -10.51042 -10.36579 -10.17970 -9.80741 -9.45618 -8.10886 -6.17706 0.23176 0.43952 1.38646 1.43319 1.50612 1.54463 1.60723 2.03193 2.46923 2.56491 2.93783 3.04032 3.24751 3.58858 3.64220 3.67895 3.98797 4.01291 4.14057 4.15521 4.21514 4.51093 4.71846 4.79881 4.81243 4.84144 4.97476 4.99933 5.09795 5.26349 5.35796 5.44363 5.74091 5.86550 5.87933 5.92125 6.16882 6.54391 6.91272 7.13681 7.17800 7.28630 7.52764 8.94689 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010392 B = 0.008706 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.828396 B = 3215.348563 C = 4564.083111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.043 3.957 3 Si 0.922 3.078 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.291 1.291 7 C -0.513 4.513 8 H 0.048 0.952 9 C 0.244 3.756 10 N -0.582 5.582 11 C 0.162 3.838 12 C -0.149 4.149 13 C -0.068 4.068 14 C -0.179 4.179 15 C 0.084 3.916 16 N -0.518 5.518 17 C 0.123 3.877 18 C 0.511 3.489 19 O -0.577 6.577 20 C 0.118 3.882 21 H 0.143 0.857 22 C -0.130 4.130 23 C 0.517 3.483 24 O -0.566 6.566 25 N -0.703 5.703 26 H 0.264 0.736 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -7.305 -2.097 8.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.158 4.158 3 Si 0.750 3.250 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.124 3.876 10 N -0.311 5.311 11 C 0.039 3.961 12 C -0.152 4.152 13 C -0.094 4.094 14 C -0.198 4.198 15 C -0.073 4.073 16 N -0.227 5.227 17 C -0.033 4.033 18 C 0.298 3.702 19 O -0.458 6.458 20 C 0.009 3.991 21 H 0.161 0.839 22 C -0.171 4.171 23 C 0.303 3.697 24 O -0.444 6.444 25 N -0.363 5.363 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.151 0.849 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.167 0.833 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.909 -6.849 -2.115 8.164 hybrid contribution 0.360 0.084 0.556 0.667 sum 4.269 -6.765 -1.559 8.150 Atomic orbital electron populations 1.69937 1.06464 1.27546 1.51101 1.25162 0.94959 1.00441 0.95204 0.86117 0.78803 0.81951 0.78134 1.20073 1.21005 1.21658 1.21391 0.92708 0.90776 1.50303 0.93383 1.19348 0.87185 0.82260 0.98806 1.48211 1.44077 1.34504 1.04338 1.20289 0.93124 0.96840 0.85843 1.21229 0.96557 0.98268 0.99185 1.21714 0.92245 0.99298 0.96166 1.22368 1.00576 0.97156 0.99747 1.23185 0.95145 0.94473 0.94450 1.67681 0.99882 1.31271 1.23909 1.22669 0.97064 0.90413 0.93197 1.20670 0.80939 0.82460 0.86109 1.90611 1.36262 1.31034 1.87915 1.21978 1.02173 0.90608 0.84315 0.83934 1.23305 1.01422 0.97465 0.94870 1.22473 0.77606 0.84435 0.85149 1.90666 1.38859 1.80122 1.34729 1.47491 1.50078 1.13206 1.25531 0.92656 0.93690 0.94921 0.89198 0.88041 0.84851 0.82458 0.80724 0.83288 0.87155 0.83992 0.72821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.15 13.29 21.45 0.28 -43.87 16 2 C 0.04 2.01 5.46 84.66 0.46 2.47 16 3 Si 0.92 39.61 29.54 68.60 2.03 41.64 16 4 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.51 -21.95 7.51 25.60 0.19 -21.76 16 8 H 0.05 2.20 7.46 -2.91 -0.02 2.18 16 9 C 0.24 9.14 4.96 85.63 0.42 9.57 16 10 N -0.58 -19.23 2.44 -830.51 -2.03 -21.25 16 11 C 0.16 4.82 5.60 85.63 0.48 5.30 16 12 C -0.15 -4.74 5.48 -19.77 -0.11 -4.85 16 13 C -0.07 -2.03 9.86 22.47 0.22 -1.81 16 14 C -0.18 -4.75 10.11 22.36 0.23 -4.52 16 15 C 0.08 2.41 11.18 84.68 0.95 3.36 16 16 N -0.52 -18.12 10.36 -195.84 -2.03 -20.15 16 17 C 0.12 4.26 10.11 84.67 0.86 5.11 16 18 C 0.51 16.97 7.14 87.66 0.63 17.60 16 19 O -0.58 -21.15 15.85 -3.04 -0.05 -21.20 16 20 C 0.12 3.45 3.57 36.28 0.13 3.58 16 21 H 0.14 3.61 6.99 -2.39 -0.02 3.60 16 22 C -0.13 -4.11 6.89 29.77 0.21 -3.91 16 23 C 0.52 17.54 9.38 79.70 0.75 18.29 16 24 O -0.57 -23.22 18.03 -3.04 -0.05 -23.27 16 25 N -0.70 -19.98 7.07 -517.80 -3.66 -23.65 16 26 H 0.26 12.58 8.31 -92.71 -0.77 11.81 16 27 H 0.05 1.68 6.23 -2.38 -0.01 1.66 16 28 H 0.03 1.30 7.89 -2.39 -0.02 1.29 16 29 H 0.09 2.54 7.38 -2.39 -0.02 2.52 16 30 H 0.10 2.68 7.84 -2.39 -0.02 2.67 16 31 H 0.13 3.97 7.69 -2.91 -0.02 3.95 16 32 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.15 5.22 8.06 -2.91 -0.02 5.19 16 35 H 0.11 3.84 7.65 -2.38 -0.02 3.82 16 36 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 37 H 0.43 10.29 8.96 -92.71 -0.83 9.46 16 Total: -1.00 -59.27 323.85 0.18 -59.09 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.28 Total: 24.23 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 5.41 Total: 28.42 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -7.43 Total: -108.91 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.10 Total: -44.47 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -59.27 0.18 -59.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.021 kcal (2) G-P(sol) polarization free energy of solvation -59.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds