Wall clock time and date at job start Tue Mar 31 2020 02:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48496 * 109.46897 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.47501 * 30.00251 * 3 2 1 6 6 H 1.48501 * 109.46824 * 150.00336 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.38225 * 119.61807 * 94.72654 * 12 11 10 14 14 C 1.38627 * 119.16098 * 179.75559 * 13 12 11 15 15 C 1.38674 * 118.42033 * 0.50395 * 14 13 12 16 16 C 1.38188 * 119.16053 * 359.73769 * 15 14 13 17 17 N 1.31856 * 119.61470 * 274.99797 * 12 11 10 18 18 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 19 19 O 1.21282 * 120.00692 * 179.97438 * 18 10 9 20 20 C 1.50705 * 119.99759 * 0.02562 * 18 10 9 21 21 H 1.09003 * 112.41870 * 50.01820 * 20 18 10 22 22 C 1.52889 * 113.04836 * 280.62413 * 20 18 10 23 23 C 1.50563 * 82.45491 * 244.54499 * 22 20 18 24 24 O 1.21281 * 131.84522 * 179.97438 * 23 22 20 25 25 N 1.34603 * 96.30424 * 0.02562 * 23 22 20 26 26 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 28 28 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 29 29 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 30 30 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 31 31 H 1.07997 * 120.42009 * 359.97438 * 13 12 11 32 32 H 1.07997 * 120.79477 * 180.26357 * 14 13 12 33 33 H 1.08002 * 120.42412 * 179.70904 * 15 14 13 34 34 H 1.08003 * 119.61198 * 179.97438 * 16 15 14 35 35 H 1.09001 * 114.37956 * 357.94521 * 22 20 18 36 36 H 1.08998 * 114.37788 * 131.14710 * 22 20 18 37 37 H 0.97004 * 134.66301 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.8188 -2.3749 2.5782 14 6 4.9693 -1.7114 2.9756 15 6 6.1863 -2.1370 2.4651 16 6 6.2123 -3.2043 1.5877 17 7 5.0978 -3.8153 1.2354 18 6 2.6400 -4.1244 -1.1694 19 8 3.4284 -5.0460 -1.1705 20 6 2.1499 -3.5507 -2.4740 21 1 2.2378 -2.4648 -2.5097 22 6 0.7580 -4.0502 -2.8622 23 6 1.5155 -4.6643 -4.0094 24 8 1.1532 -5.3412 -4.9482 25 7 2.7295 -4.2119 -3.6440 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 1.9070 -4.0565 2.0267 30 1 2.9081 -5.2278 1.1354 31 1 2.8534 -2.0675 2.9522 32 1 4.9186 -0.8802 3.6633 33 1 7.1023 -1.6403 2.7492 34 1 7.1561 -3.5416 1.1854 35 1 0.3294 -4.7729 -2.1678 36 1 0.0623 -3.2630 -3.1526 37 1 3.6249 -4.2912 -4.0086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597148544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:05 Heat of formation + Delta-G solvation = 2.676768 kcal Electronic energy + Delta-G solvation = -23202.652040 eV Core-core repulsion = 19753.383287 eV Total energy + Delta-G solvation = -3449.268752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99769 -39.82236 -38.36842 -35.99822 -35.19965 -32.89418 -32.05534 -31.40330 -28.91569 -27.75172 -26.63225 -24.56511 -23.20010 -22.84825 -21.68727 -19.74608 -18.89447 -17.13479 -16.86803 -16.77137 -16.42910 -16.08052 -15.73286 -15.27563 -15.16808 -14.78478 -14.13526 -14.01901 -13.36537 -12.98205 -12.83702 -12.73592 -12.59574 -12.34997 -12.02094 -11.79290 -11.57900 -11.45150 -11.30958 -11.03882 -10.87272 -10.34471 -9.92836 -9.81515 -9.63752 -9.47481 -9.04114 -8.80562 -8.72480 -8.48519 -7.89853 -6.30913 -4.37863 1.44781 1.69024 2.75642 3.06362 3.12661 3.21617 3.25210 3.48610 3.83723 4.18131 4.21287 4.35465 4.68124 4.91776 5.01481 5.05807 5.13897 5.17093 5.39723 5.49993 5.55928 5.77269 5.84583 5.87662 6.08247 6.10866 6.15052 6.45147 6.48748 6.55015 6.56832 7.00085 7.07007 7.20693 7.35452 7.64116 7.91277 8.12349 8.44103 8.51957 8.66556 8.84910 9.30770 10.75415 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.007475 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.898211 B = 3744.858360 C = 5371.192796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.232 3.768 10 N -0.587 5.587 11 C 0.171 3.829 12 C 0.122 3.878 13 C -0.131 4.131 14 C -0.084 4.084 15 C -0.180 4.180 16 C 0.086 3.914 17 N -0.461 5.461 18 C 0.512 3.488 19 O -0.540 6.540 20 C 0.110 3.890 21 H 0.133 0.867 22 C -0.154 4.154 23 C 0.524 3.476 24 O -0.530 6.530 25 N -0.714 5.714 26 H 0.266 0.734 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -2.067 4.410 6.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.112 3.888 10 N -0.319 5.319 11 C 0.047 3.953 12 C -0.017 4.017 13 C -0.151 4.151 14 C -0.110 4.110 15 C -0.200 4.200 16 C -0.071 4.071 17 N -0.171 5.171 18 C 0.297 3.703 19 O -0.418 6.418 20 C 0.001 3.999 21 H 0.150 0.850 22 C -0.195 4.195 23 C 0.309 3.691 24 O -0.406 6.406 25 N -0.374 5.374 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.164 0.836 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.823 -3.507 3.295 6.813 hybrid contribution 1.087 2.215 0.599 2.539 sum 5.910 -1.292 3.894 7.195 Atomic orbital electron populations 1.69900 1.05845 1.27394 1.49384 1.24875 0.94757 0.99020 0.94733 0.86626 0.79947 0.83331 0.78439 1.20501 1.21040 1.19866 1.21430 0.93484 0.90251 1.52253 0.92242 1.19599 0.87360 0.82616 0.99215 1.48140 1.44953 1.35302 1.03467 1.20127 0.91224 0.97453 0.86500 1.21621 0.93605 0.94029 0.92455 1.21991 0.99536 0.95524 0.98043 1.21507 0.92547 0.98503 0.98450 1.22042 0.98620 0.99198 1.00184 1.22637 0.96674 0.92959 0.94841 1.67564 0.98187 1.29481 1.21829 1.20356 0.81476 0.83006 0.85440 1.90681 1.34375 1.29360 1.87351 1.22076 0.91683 1.00716 0.85379 0.84953 1.23426 0.96739 1.02347 0.96965 1.21931 0.83517 0.78315 0.85358 1.90691 1.77400 1.39300 1.33186 1.47544 1.09568 1.54246 1.26076 0.92422 0.93778 0.94217 0.89182 0.89279 0.84491 0.85425 0.85650 0.83627 0.86238 0.85030 0.73894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.99 13.29 55.43 0.74 -21.26 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 19.16 29.54 -169.99 -5.02 14.14 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -12.21 8.93 -34.44 -0.31 -12.51 16 8 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.23 4.67 4.91 -5.20 -0.03 4.65 16 10 N -0.59 -10.93 2.44 -176.43 -0.43 -11.36 16 11 C 0.17 2.93 5.76 -5.19 -0.03 2.90 16 12 C 0.12 2.17 6.36 -82.59 -0.53 1.64 16 13 C -0.13 -2.13 9.55 -39.44 -0.38 -2.51 16 14 C -0.08 -1.23 10.18 -39.28 -0.40 -1.63 16 15 C -0.18 -2.50 10.11 -39.44 -0.40 -2.90 16 16 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 17 N -0.46 -8.53 10.27 -9.47 -0.10 -8.62 16 18 C 0.51 9.77 7.14 -10.98 -0.08 9.70 16 19 O -0.54 -11.63 16.21 5.56 0.09 -11.54 16 20 C 0.11 1.85 3.47 -81.48 -0.28 1.56 16 21 H 0.13 2.28 7.62 -51.93 -0.40 1.89 16 22 C -0.15 -2.27 6.92 -28.01 -0.19 -2.47 16 23 C 0.52 8.97 9.38 -23.39 -0.22 8.75 16 24 O -0.53 -10.70 18.03 5.56 0.10 -10.60 16 25 N -0.71 -11.55 7.07 -77.55 -0.55 -12.10 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.04 0.88 5.87 -51.93 -0.30 0.58 16 28 H 0.04 0.83 7.89 -51.93 -0.41 0.42 16 29 H 0.09 1.31 7.80 -51.93 -0.40 0.91 16 30 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 31 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.12 1.65 8.00 -51.93 -0.42 1.23 16 36 H 0.13 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.42 6.14 8.96 -40.82 -0.37 5.77 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -30.23 327.58 -7.71 -37.93 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.34 Total: 8.59 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -3.13 Total: 9.89 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.34 Total: -53.34 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.19 Total: -22.14 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.23 -7.71 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597148544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.612 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds