Wall clock time and date at job start Tue Mar 31 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47096 * 2 1 4 4 O 1.42895 * 109.47219 * 239.99854 * 2 1 3 5 5 C 1.42898 * 114.00324 * 89.99914 * 4 2 1 6 6 C 1.50697 * 109.47017 * 179.97438 * 5 4 2 7 7 C 1.38651 * 120.78974 * 269.71750 * 6 5 4 8 8 C 1.38213 * 119.15950 * 179.79856 * 7 6 5 9 9 N 1.31860 * 120.76403 * 0.49162 * 8 7 6 10 10 C 1.31874 * 121.72722 * 359.74073 * 9 8 7 11 11 C 1.38194 * 120.76586 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.46912 * 119.99346 * 2 1 3 13 13 O 1.21286 * 119.99692 * 101.47271 * 12 2 1 14 14 N 1.34771 * 120.00100 * 281.46615 * 12 2 1 15 15 C 1.37092 * 120.00071 * 184.79153 * 14 12 2 16 16 H 1.08007 * 120.00016 * 10.72081 * 15 14 12 17 17 C 1.38953 * 120.00494 * 190.71694 * 15 14 12 18 18 N 1.31410 * 119.99914 * 26.71518 * 17 15 14 19 19 Si 1.86793 * 120.00196 * 206.72078 * 17 15 14 20 20 H 1.48497 * 109.47716 * 59.99654 * 19 17 15 21 21 H 1.48500 * 109.47363 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47030 * 299.99280 * 19 17 15 23 23 C 1.46506 * 120.00284 * 4.79987 * 14 12 2 24 24 C 1.47202 * 109.47161 * 90.32771 * 23 14 12 25 25 N 4.22703 * 52.12016 * 71.27452 * 2 1 3 26 26 H 1.08997 * 109.47163 * 305.79718 * 1 2 3 27 27 H 1.09003 * 109.46808 * 65.79436 * 1 2 3 28 28 H 1.08995 * 109.47126 * 185.79636 * 1 2 3 29 29 H 1.08992 * 109.46983 * 300.00141 * 5 4 2 30 30 H 1.09003 * 109.47193 * 60.00204 * 5 4 2 31 31 H 1.07997 * 120.41875 * 0.02562 * 7 6 5 32 32 H 1.07997 * 119.61475 * 180.20773 * 8 7 6 33 33 H 1.08001 * 119.61635 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.42144 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00301 * 180.02562 * 18 17 15 36 36 H 1.08999 * 109.46962 * 210.32921 * 23 14 12 37 37 H 1.08998 * 109.46403 * 330.32963 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1828 -2.2941 6 6 2.7015 -0.6284 -3.4609 7 6 4.0605 -0.8067 -3.6696 8 6 4.4830 -1.5606 -4.7482 9 7 3.6109 -2.0986 -5.5781 10 6 2.3114 -1.9460 -5.4132 11 6 1.8148 -1.2093 -4.3547 12 6 2.0323 -0.7103 1.2306 13 8 2.4314 -1.8528 1.1508 14 7 2.0381 -0.0759 2.4196 15 6 2.5851 -0.6854 3.5191 16 1 3.1623 -1.5909 3.4033 17 6 2.3970 -0.1382 4.7824 18 7 1.3349 0.5951 5.0293 19 14 3.6540 -0.4449 6.1297 20 1 4.9752 0.0823 5.7035 21 1 3.2246 0.2436 7.3734 22 1 3.7617 -1.9042 6.3833 23 6 1.4598 1.2650 2.5374 24 6 0.0345 1.1556 2.8887 25 7 -1.0654 1.0711 3.1598 26 1 -0.3633 0.6011 0.8335 27 1 -0.3633 0.4214 -0.9374 28 1 -0.3633 -1.0224 0.1038 29 1 1.2539 0.6545 -2.5588 30 1 2.9320 0.9512 -2.0451 31 1 4.7798 -0.3651 -2.9958 32 1 5.5398 -1.7070 -4.9158 33 1 1.6274 -2.4022 -6.1135 34 1 0.7495 -1.0883 -4.2248 35 1 1.2037 0.9774 5.9111 36 1 1.9842 1.8198 3.3154 37 1 1.5606 1.7888 1.5868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601027599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:21 Heat of formation + Delta-G solvation = 5.933369 kcal Electronic energy + Delta-G solvation = -22368.800073 eV Core-core repulsion = 18919.672538 eV Total energy + Delta-G solvation = -3449.127535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.26160 -39.35226 -37.42863 -35.80259 -34.37286 -33.40536 -32.11578 -31.30059 -30.58744 -27.53088 -26.86279 -25.41046 -23.56213 -23.12989 -22.03397 -19.49320 -18.07569 -17.37193 -16.65078 -16.49320 -16.27192 -16.01807 -15.65136 -14.96290 -14.89272 -14.28189 -13.83624 -13.81925 -13.65945 -13.44698 -13.35758 -12.81505 -12.38545 -12.12020 -11.97584 -11.83563 -11.69901 -11.47394 -11.32048 -11.15250 -11.04667 -10.57073 -10.45360 -10.33598 -9.84131 -9.62219 -9.58484 -9.30608 -9.23403 -8.48824 -8.17077 -6.59635 -4.01657 1.05220 1.06172 3.07322 3.18094 3.19919 3.40564 3.47601 3.74211 3.89634 3.98741 4.14005 4.36388 4.55516 4.60970 4.76675 4.91311 4.97361 5.03021 5.06309 5.16179 5.23951 5.30894 5.35803 5.51781 5.52866 5.69057 5.85957 5.87002 5.93066 5.98806 6.23658 6.37391 6.44028 6.59000 7.19316 7.41651 7.81796 7.85573 8.22262 8.69490 8.93445 9.12025 9.66021 10.46120 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.003840 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.284583 B = 7289.692021 C = 8103.967125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.075 0.925 4 O -0.347 6.347 5 C 0.094 3.906 6 C -0.038 4.038 7 C -0.149 4.149 8 C 0.094 3.906 9 N -0.486 5.486 10 C 0.093 3.907 11 C -0.152 4.152 12 C 0.455 3.545 13 O -0.552 6.552 14 N -0.440 5.440 15 C -0.317 4.317 16 H 0.112 0.888 17 C 0.035 3.965 18 N -0.872 5.872 19 Si 0.926 3.074 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.217 3.783 24 C 0.248 3.752 25 N -0.469 5.469 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.275 0.725 36 H 0.126 0.874 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 5.557 -14.536 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 H 0.093 0.907 4 O -0.265 6.265 5 C 0.018 3.982 6 C -0.046 4.046 7 C -0.169 4.169 8 C -0.062 4.062 9 N -0.195 5.195 10 C -0.064 4.064 11 C -0.172 4.172 12 C 0.242 3.758 13 O -0.432 6.432 14 N -0.162 5.162 15 C -0.444 4.444 16 H 0.129 0.871 17 C -0.170 4.170 18 N -0.510 5.510 19 Si 0.752 3.248 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.090 3.910 24 C -0.069 4.069 25 N -0.149 5.149 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.057 4.249 -14.701 15.441 hybrid contribution 0.411 0.738 1.634 1.840 sum 2.468 4.987 -13.067 14.203 Atomic orbital electron populations 1.22304 0.94343 1.03929 1.02413 1.21996 0.94627 0.95826 0.86046 0.90693 1.88139 1.86613 1.33317 1.18446 1.21398 0.99853 0.91834 0.85165 1.20037 0.93639 0.96336 0.94611 1.22133 0.95970 0.99855 0.98959 1.22754 0.99629 0.93228 0.90637 1.67646 1.03392 1.19742 1.28759 1.22733 0.91960 0.95535 0.96165 1.22090 1.01068 0.98286 0.95764 1.19736 0.84762 0.87228 0.84037 1.90573 1.50136 1.17336 1.85185 1.43669 1.51387 1.13188 1.07990 1.19709 1.29191 1.11848 0.83631 0.87079 1.25228 0.96286 0.97190 0.98253 1.69858 1.22782 1.34651 1.23719 0.85983 0.80716 0.79004 0.79062 1.19628 1.20997 1.19735 1.18815 0.83246 0.87423 1.01543 1.29057 0.94382 0.92876 0.90631 1.80912 1.14692 1.07959 1.11351 0.90869 0.92005 0.91280 0.92020 0.91869 0.84445 0.82623 0.82717 0.84642 0.91411 0.85676 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.36 37.16 0.35 -2.40 16 2 C 0.08 1.31 2.33 -27.88 -0.06 1.24 16 3 H 0.08 1.02 6.19 -51.93 -0.32 0.70 16 4 O -0.35 -6.00 9.57 -54.42 -0.52 -6.52 16 5 C 0.09 1.15 5.92 36.00 0.21 1.36 16 6 C -0.04 -0.47 5.55 -104.32 -0.58 -1.04 16 7 C -0.15 -1.72 9.82 -39.44 -0.39 -2.11 16 8 C 0.09 1.06 11.18 -17.55 -0.20 0.86 16 9 N -0.49 -6.06 10.36 -13.25 -0.14 -6.20 16 10 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 11 C -0.15 -1.69 9.82 -39.44 -0.39 -2.08 16 12 C 0.45 10.35 6.90 -10.99 -0.08 10.27 16 13 O -0.55 -15.02 16.23 -13.64 -0.22 -15.24 16 14 N -0.44 -10.04 2.58 -117.93 -0.30 -10.35 16 15 C -0.32 -8.07 9.37 -14.93 -0.14 -8.21 16 16 H 0.11 3.02 7.37 -52.48 -0.39 2.63 16 17 C 0.03 0.83 4.82 -17.47 -0.08 0.75 16 18 N -0.87 -21.37 9.29 55.50 0.52 -20.85 16 19 Si 0.93 19.21 29.63 -169.99 -5.04 14.17 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C 0.22 4.11 4.80 -6.82 -0.03 4.07 16 24 C 0.25 5.26 10.68 -20.76 -0.22 5.04 16 25 N -0.47 -10.74 18.42 42.15 0.78 -9.97 16 26 H 0.07 1.23 4.59 -51.93 -0.24 0.99 16 27 H 0.06 0.78 7.77 -51.93 -0.40 0.37 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.62 7.73 -51.93 -0.40 0.22 16 30 H 0.06 0.65 8.04 -51.93 -0.42 0.24 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.13 2.39 6.55 -51.93 -0.34 2.05 16 37 H 0.08 1.16 5.93 -51.93 -0.31 0.85 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -32.98 321.97 -5.95 -38.92 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.07 Total: 2.58 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.80 Total: 8.59 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.85 Total: -47.36 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.74 Total: -21.76 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.04 Total: 14.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.98 -5.95 -38.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.858 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds