Wall clock time and date at job start Tue Mar 31 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38031 * 120.34520 * 2 1 4 4 C 1.43200 * 120.95042 * 359.97438 * 3 2 1 5 5 N 3.48501 * 81.15093 * 359.97438 * 2 1 3 6 6 C 1.47195 * 118.09922 * 180.25967 * 3 2 1 7 7 O 1.21679 * 120.72307 * 179.72400 * 6 3 2 8 8 N 1.34969 * 118.54529 * 359.38776 * 6 3 2 9 9 C 1.46505 * 119.77413 * 180.31310 * 8 6 3 10 10 C 1.52996 * 109.47033 * 270.33224 * 9 8 6 11 11 C 1.50697 * 109.46779 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00297 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99828 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00294 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99850 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47151 * 60.00057 * 15 13 11 17 17 H 1.48496 * 109.47018 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47306 * 299.99825 * 15 13 11 19 19 C 1.34404 * 120.45245 * 0.64717 * 8 6 3 20 20 O 1.21564 * 118.94328 * 179.66735 * 19 8 6 21 21 N 1.34235 * 122.11559 * 359.64480 * 19 8 6 22 22 C 1.46494 * 119.26192 * 180.02562 * 21 19 8 23 23 C 1.53003 * 117.50294 * 313.01816 * 22 21 19 24 24 C 1.53001 * 117.49989 * 244.35730 * 22 21 19 25 25 H 1.09001 * 109.47033 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47342 * 119.99881 * 1 2 3 27 27 H 1.09005 * 109.46704 * 240.00163 * 1 2 3 28 28 H 1.09010 * 109.46704 * 30.33392 * 9 8 6 29 29 H 1.09002 * 109.47160 * 150.32715 * 9 8 6 30 30 H 1.08993 * 109.47370 * 299.99784 * 10 9 8 31 31 H 1.08999 * 109.47226 * 60.00421 * 10 9 8 32 32 H 0.96992 * 120.00003 * 180.02562 * 14 13 11 33 33 H 1.09000 * 115.55195 * 98.69435 * 22 21 19 34 34 H 1.09001 * 117.49127 * 0.02562 * 23 22 21 35 35 H 1.08993 * 117.49751 * 145.01607 * 23 22 21 36 36 H 1.08995 * 117.50090 * 214.98031 * 24 22 21 37 37 H 1.09005 * 117.49605 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2043 1.1912 0.0000 4 6 1.5165 2.4472 -0.0005 5 7 0.9708 3.4435 -0.0015 6 6 3.6751 1.1335 -0.0059 7 8 4.3372 2.1544 -0.0112 8 7 4.2731 -0.0764 0.0017 9 6 5.7355 -0.1652 0.0030 10 6 6.2458 -0.1963 -1.4390 11 6 7.7501 -0.2869 -1.4375 12 1 8.2882 -0.3195 -0.5017 13 6 8.4393 -0.3293 -2.6309 14 7 7.7841 -0.2902 -3.7705 15 14 10.3039 -0.4424 -2.6291 16 1 10.7240 -1.6823 -1.9280 17 1 10.7993 -0.4738 -4.0287 18 1 10.8708 0.7383 -1.9293 19 6 3.5363 -1.2005 0.0012 20 8 4.1035 -2.2757 0.0020 21 7 2.1942 -1.1740 0.0004 22 6 1.4531 -2.4377 0.0005 23 6 1.8949 -3.5160 -0.9910 24 6 0.5898 -2.7505 -1.2234 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 -0.3633 -0.5138 0.8901 28 1 6.1515 0.7014 0.5172 29 1 6.0438 -1.0754 0.5174 30 1 5.8298 -1.0627 -1.9530 31 1 5.9376 0.7140 -1.9532 32 1 8.2689 -0.3204 -4.6100 33 1 1.0864 -2.7676 0.9725 34 1 2.7373 -3.2852 -1.6431 35 1 1.8187 -4.5552 -0.6714 36 1 -0.3445 -3.2865 -1.0566 37 1 0.5730 -2.0158 -2.0285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601093303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:04 Heat of formation + Delta-G solvation = -1.706661 kcal Electronic energy + Delta-G solvation = -23004.251358 eV Core-core repulsion = 19554.792526 eV Total energy + Delta-G solvation = -3449.458832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.58999 -40.55471 -39.43567 -37.75462 -37.13049 -36.33686 -35.08199 -32.97173 -32.30747 -29.98388 -27.07602 -25.58125 -24.58229 -23.99940 -23.34132 -22.45830 -20.52609 -20.14739 -18.86761 -18.30938 -18.00236 -17.45577 -16.61168 -16.57718 -16.28728 -15.93309 -15.41060 -15.06893 -15.01550 -14.89264 -14.43637 -14.35924 -14.19399 -14.16037 -13.72980 -13.62783 -13.18548 -12.85875 -12.83360 -12.49614 -12.37509 -12.09133 -12.06635 -11.96112 -11.60234 -11.48819 -11.35491 -11.33218 -10.73069 -10.62410 -9.70648 -8.26536 -6.39470 -0.50113 0.58079 0.62886 1.22004 1.39150 1.43781 1.51259 1.75134 2.03873 2.38886 2.44835 2.46759 2.86186 2.95999 3.07790 3.43415 3.70773 3.84705 3.92894 4.09755 4.19083 4.26308 4.40989 4.52144 4.58391 4.61949 4.70048 4.81705 4.94000 5.02029 5.10804 5.19572 5.24459 5.32599 5.42123 5.69736 6.00653 6.06652 6.34868 6.42711 6.66096 6.75837 7.30010 8.86365 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.005079 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.459696 B = 5511.798078 C = 6639.397068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.320 3.680 3 C -0.255 4.255 4 C 0.314 3.686 5 N -0.451 5.451 6 C 0.557 3.443 7 O -0.543 6.543 8 N -0.552 5.552 9 C 0.130 3.870 10 C 0.030 3.970 11 C -0.545 4.545 12 H 0.070 0.930 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.974 3.026 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.688 3.312 20 O -0.535 6.535 21 N -0.488 5.488 22 C 0.033 3.967 23 C -0.172 4.172 24 C -0.140 4.140 25 H 0.090 0.910 26 H 0.135 0.865 27 H 0.146 0.854 28 H 0.087 0.913 29 H 0.097 0.903 30 H -0.006 1.006 31 H -0.016 1.016 32 H 0.266 0.734 33 H 0.181 0.819 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.162 0.838 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.975 -9.085 8.903 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.204 3.796 3 C -0.269 4.269 4 C 0.001 3.999 5 N -0.129 5.129 6 C 0.351 3.649 7 O -0.420 6.420 8 N -0.294 5.294 9 C 0.009 3.991 10 C -0.008 4.008 11 C -0.583 4.583 12 H 0.088 0.912 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.797 3.203 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.191 1.191 19 C 0.392 3.608 20 O -0.407 6.407 21 N -0.203 5.203 22 C -0.067 4.067 23 C -0.209 4.209 24 C -0.178 4.178 25 H 0.109 0.891 26 H 0.153 0.847 27 H 0.164 0.836 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.012 0.988 31 H 0.003 0.997 32 H 0.074 0.926 33 H 0.198 0.802 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.179 0.821 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.983 -7.779 8.730 24.900 hybrid contribution 2.060 0.101 -0.526 2.128 sum -19.924 -7.678 8.205 22.874 Atomic orbital electron populations 1.21665 0.81484 1.06937 1.08605 1.21838 0.97421 0.81812 0.78480 1.16674 0.89002 0.88380 1.32856 1.24027 0.92372 0.91482 0.92065 1.81237 1.10044 1.09090 1.12557 1.18550 0.88448 0.82509 0.75386 1.90852 1.67436 1.34218 1.49472 1.46604 1.10685 1.06166 1.65921 1.21847 0.73411 1.03590 1.00219 1.19102 0.96209 0.94597 0.90895 1.21416 0.91895 1.51515 0.93488 0.91158 1.26034 1.04569 0.94166 0.94881 1.70105 1.38117 1.50889 0.98131 0.85370 0.78097 0.79424 0.77383 1.18574 1.20657 1.19119 1.16004 0.82043 0.84252 0.78550 1.91024 1.69350 1.27541 1.52823 1.44321 1.03653 1.08409 1.63895 1.22707 1.01454 0.82522 1.00037 1.23280 0.98814 0.98215 1.00637 1.23791 0.96483 1.01977 0.95504 0.89101 0.84729 0.83624 0.89484 0.88426 0.98792 0.99728 0.92576 0.80245 0.91673 0.85122 0.82053 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 8.75 71.23 0.62 -0.05 16 2 C 0.32 5.60 6.68 41.86 0.28 5.88 16 3 C -0.26 -7.13 5.92 -19.73 -0.12 -7.25 16 4 C 0.31 9.24 13.37 88.33 1.18 10.42 16 5 N -0.45 -14.42 18.54 19.00 0.35 -14.07 16 6 C 0.56 21.77 7.63 86.57 0.66 22.43 16 7 O -0.54 -25.99 16.35 -4.28 -0.07 -26.06 16 8 N -0.55 -21.74 2.56 -777.05 -1.99 -23.73 16 9 C 0.13 5.95 5.02 86.38 0.43 6.38 16 10 C 0.03 1.69 5.30 29.85 0.16 1.85 16 11 C -0.54 -32.30 9.11 25.60 0.23 -32.07 16 12 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 13 C 0.00 0.10 5.46 84.66 0.46 0.57 16 14 N -0.93 -58.81 13.29 21.45 0.28 -58.53 16 15 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 C 0.69 22.70 7.91 179.34 1.42 24.12 16 20 O -0.54 -20.26 13.93 -3.92 -0.05 -20.32 16 21 N -0.49 -10.05 2.90 -618.51 -1.79 -11.84 16 22 C 0.03 0.37 5.12 44.99 0.23 0.60 16 23 C -0.17 -2.60 9.14 30.62 0.28 -2.32 16 24 C -0.14 -0.80 8.73 30.62 0.27 -0.54 16 25 H 0.09 0.69 6.51 -2.39 -0.02 0.67 16 26 H 0.13 0.05 6.24 -2.39 -0.01 0.03 16 27 H 0.15 -0.28 8.11 -2.38 -0.02 -0.30 16 28 H 0.09 4.02 7.45 -2.38 -0.02 4.00 16 29 H 0.10 4.28 7.35 -2.39 -0.02 4.26 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 31 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.18 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.65 7.31 -2.39 -0.02 1.64 16 35 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.16 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.10 0.72 7.61 -2.38 -0.02 0.71 16 Total: -1.00 -87.11 323.90 5.98 -81.13 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: 1.11 Total: -4.13 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: 6.11 Total: 30.05 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.14 Total: -108.17 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -0.12 Total: -46.37 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -87.11 5.98 -81.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601093303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.422 kcal (2) G-P(sol) polarization free energy of solvation -87.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds