Wall clock time and date at job start Tue Mar 31 2020 02:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86804 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47195 * 274.99663 * 3 2 1 5 5 H 1.48496 * 109.46686 * 34.99546 * 3 2 1 6 6 H 1.48500 * 109.47106 * 154.99517 * 3 2 1 7 7 C 1.40039 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00160 * 144.71509 * 7 2 1 9 9 C 1.41539 * 119.99684 * 324.71652 * 7 2 1 10 10 C 1.41176 * 120.99763 * 344.47330 * 9 7 2 11 11 C 1.37591 * 119.01868 * 179.97438 * 10 9 7 12 12 N 1.32088 * 121.10384 * 359.74235 * 11 10 9 13 13 C 1.32468 * 122.23388 * 0.53272 * 12 11 10 14 14 N 1.39460 * 119.58123 * 179.75067 * 13 12 11 15 15 C 1.34777 * 119.99919 * 2.32302 * 14 13 12 16 16 O 1.21273 * 119.99835 * 353.73772 * 15 14 13 17 17 C 1.50700 * 120.00088 * 173.73319 * 15 14 13 18 18 H 1.09004 * 109.32820 * 59.78441 * 17 15 14 19 19 C 1.53075 * 109.40723 * 179.57397 * 17 15 14 20 20 C 1.53340 * 108.41662 * 169.04116 * 19 17 15 21 21 C 1.52924 * 108.67289 * 292.45705 * 20 19 17 22 22 N 1.45746 * 110.48930 * 50.75490 * 21 20 19 23 23 C 1.33353 * 124.10373 * 340.94800 * 22 21 20 24 24 O 1.21290 * 118.24452 * 181.91967 * 23 22 21 25 25 C 1.38606 * 120.83755 * 359.46812 * 13 12 11 26 26 H 0.97002 * 119.99247 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.49293 * 359.95661 * 10 9 7 28 28 H 1.07995 * 119.44810 * 179.97438 * 11 10 9 29 29 H 0.97003 * 120.00054 * 182.33052 * 14 13 12 30 30 H 1.09003 * 109.68902 * 49.30431 * 19 17 15 31 31 H 1.09004 * 109.66873 * 288.76734 * 19 17 15 32 32 H 1.09003 * 109.60590 * 172.70247 * 20 19 17 33 33 H 1.08996 * 109.60497 * 52.21338 * 20 19 17 34 34 H 1.08993 * 109.30091 * 290.43712 * 21 20 19 35 35 H 1.09002 * 109.29719 * 171.06736 * 21 20 19 36 36 H 0.97000 * 117.95181 * 160.92026 * 22 21 20 37 37 H 1.08000 * 120.59947 * 180.23266 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3835 2.1074 -1.3947 5 1 1.4957 2.6198 0.8030 6 1 3.5879 1.4119 0.5918 7 6 2.0076 -1.2128 -0.0005 8 1 2.9387 -1.2985 -0.5408 9 6 1.4948 -2.3262 0.7070 10 6 0.4765 -2.1683 1.6719 11 6 0.0076 -3.2788 2.3354 12 7 0.4907 -4.4812 2.0793 13 6 1.4495 -4.6823 1.1876 14 7 1.9222 -5.9752 0.9648 15 6 1.3718 -7.0163 1.6202 16 8 0.5453 -6.8194 2.4856 17 6 1.7833 -8.4250 1.2777 18 1 2.8543 -8.5389 1.4454 19 6 1.0215 -9.4085 2.1697 20 6 1.2418 -10.8256 1.6267 21 6 0.5479 -10.9430 0.2690 22 7 0.9383 -9.8404 -0.6005 23 6 1.4726 -8.6985 -0.1659 24 8 1.7256 -7.8364 -0.9807 25 6 1.9848 -3.6247 0.4692 26 1 -0.4849 0.8401 0.0004 27 1 0.0717 -1.1902 1.8865 28 1 -0.7710 -3.1659 3.0752 29 1 2.6473 -6.1252 0.3381 30 1 -0.0421 -9.1707 2.1538 31 1 1.3972 -9.3443 3.1909 32 1 0.8167 -11.5526 2.3187 33 1 2.3095 -11.0102 1.5089 34 1 -0.5322 -10.9228 0.4135 35 1 0.8282 -11.8870 -0.1983 36 1 0.8014 -9.9438 -1.5552 37 1 2.7638 -3.7935 -0.2595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601328704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:25 Heat of formation + Delta-G solvation = -39.165711 kcal Electronic energy + Delta-G solvation = -22440.973614 eV Core-core repulsion = 18989.890435 eV Total energy + Delta-G solvation = -3451.083178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87223 -39.07185 -37.62454 -36.63453 -34.44294 -33.50409 -33.09224 -30.69133 -30.19206 -28.34539 -25.95940 -25.18113 -22.91290 -22.03036 -21.61657 -20.05153 -19.06981 -17.83363 -17.53255 -16.90967 -16.46357 -15.80616 -15.19773 -15.10550 -14.60562 -14.30766 -14.20238 -13.98883 -13.79610 -13.55965 -13.43165 -12.92848 -12.51364 -12.22292 -11.94977 -11.63860 -11.54351 -11.45318 -11.25127 -11.19336 -10.86555 -10.42235 -10.06700 -9.90715 -9.59095 -9.37972 -9.26964 -9.12955 -8.08682 -7.62397 -7.03046 -6.89013 -4.52057 2.36515 2.62563 2.78341 3.01786 3.03275 3.07434 3.28730 3.57028 3.62943 3.85063 4.36417 4.44646 4.52319 4.55458 4.61403 5.03155 5.07541 5.12223 5.33503 5.48316 5.57138 5.75819 5.78869 6.06448 6.08862 6.57394 6.70414 6.74343 6.87930 6.91520 7.07786 7.12778 7.48658 7.54182 7.86307 7.90889 8.04592 8.25744 8.49498 8.71642 8.77909 8.91520 9.80444 9.93297 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036563 B = 0.003497 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.607318 B = 8005.488370 C = 8392.290049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.092 3.908 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.461 4.461 8 H 0.085 0.915 9 C 0.146 3.854 10 C -0.247 4.247 11 C 0.111 3.889 12 N -0.565 5.565 13 C 0.357 3.643 14 N -0.643 5.643 15 C 0.515 3.485 16 O -0.475 6.475 17 C -0.128 4.128 18 H 0.127 0.873 19 C -0.105 4.105 20 C -0.137 4.137 21 C 0.108 3.892 22 N -0.718 5.718 23 C 0.528 3.472 24 O -0.537 6.537 25 C -0.310 4.310 26 H 0.286 0.714 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.412 0.588 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.402 0.598 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 -17.618 0.788 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.132 4.132 3 Si 0.722 3.278 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.103 0.897 9 C 0.138 3.862 10 C -0.271 4.271 11 C -0.040 4.040 12 N -0.286 5.286 13 C 0.130 3.870 14 N -0.288 5.288 15 C 0.297 3.703 16 O -0.344 6.344 17 C -0.152 4.152 18 H 0.144 0.856 19 C -0.143 4.143 20 C -0.175 4.175 21 C -0.016 4.016 22 N -0.371 5.371 23 C 0.313 3.687 24 O -0.413 6.413 25 C -0.336 4.336 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.249 0.751 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.237 0.763 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.992 -17.653 1.689 17.845 hybrid contribution 0.942 1.278 -1.285 2.042 sum 2.934 -16.375 0.404 16.641 Atomic orbital electron populations 1.69929 1.08391 1.30251 1.29083 1.26020 0.94281 1.01829 0.91104 0.86456 0.81581 0.80447 0.79293 1.19331 1.19746 1.17936 1.19512 1.07189 0.94061 1.28293 0.89704 1.17464 0.88725 0.90823 0.89190 1.21937 1.04363 0.98756 1.02019 1.21791 0.97164 0.87731 0.97299 1.67214 1.15232 1.24965 1.21140 1.18011 0.92830 0.82839 0.93338 1.43400 1.37309 1.04810 1.43327 1.19790 0.82671 0.85143 0.82708 1.90792 1.30230 1.84463 1.28964 1.21539 1.04263 0.96021 0.93408 0.85581 1.21512 1.02061 0.91687 0.99053 1.21923 1.01617 0.97979 0.95954 1.21427 0.99715 0.89168 0.91328 1.45354 1.64090 1.16338 1.11348 1.19658 0.77027 0.81648 0.90337 1.90818 1.52353 1.43071 1.55065 1.21059 1.11122 0.92320 1.09141 0.90315 0.86746 0.86110 0.75136 0.89744 0.89713 0.89271 0.90830 0.91432 0.90447 0.76274 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.19 11.63 55.55 0.65 -18.55 16 2 C 0.09 2.28 4.82 -17.34 -0.08 2.20 16 3 Si 0.90 18.07 29.67 -169.99 -5.04 13.03 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 7 C -0.46 -12.28 9.01 -37.65 -0.34 -12.62 16 8 H 0.08 2.16 8.04 -52.49 -0.42 1.74 16 9 C 0.15 4.02 5.65 -106.55 -0.60 3.41 16 10 C -0.25 -6.67 8.93 -38.70 -0.35 -7.02 16 11 C 0.11 2.89 11.15 -17.68 -0.20 2.70 16 12 N -0.57 -15.20 7.85 -12.52 -0.10 -15.29 16 13 C 0.36 9.07 7.42 -154.71 -1.15 7.92 16 14 N -0.64 -13.47 4.74 -11.49 -0.05 -13.52 16 15 C 0.51 9.93 7.01 -10.99 -0.08 9.86 16 16 O -0.47 -10.85 14.05 5.56 0.08 -10.77 16 17 C -0.13 -1.68 2.77 -93.14 -0.26 -1.94 16 18 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.11 -1.10 4.78 -26.52 -0.13 -1.23 16 20 C -0.14 -0.88 6.02 -26.59 -0.16 -1.04 16 21 C 0.11 0.69 7.17 -4.49 -0.03 0.66 16 22 N -0.72 -7.03 5.45 -61.39 -0.33 -7.36 16 23 C 0.53 7.26 7.28 -11.87 -0.09 7.18 16 24 O -0.54 -9.51 15.71 5.55 0.09 -9.42 16 25 C -0.31 -8.07 9.73 -38.48 -0.37 -8.44 16 26 H 0.29 6.48 8.29 -40.82 -0.34 6.14 16 27 H 0.11 3.07 6.34 -52.48 -0.33 2.73 16 28 H 0.12 2.81 8.06 -52.49 -0.42 2.39 16 29 H 0.41 7.60 7.64 -40.82 -0.31 7.29 16 30 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.40 3.50 8.80 -40.82 -0.36 3.14 16 37 H 0.10 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -34.67 313.95 -8.16 -42.84 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.34 Total: 12.69 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.83 Total: 1.64 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.16 Total: -54.73 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.04 Total: 13.03 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.67 -8.16 -42.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.670 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds