Wall clock time and date at job start Tue Mar 31 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86807 * 119.99741 * 2 1 4 4 H 1.48503 * 109.46855 * 240.00089 * 3 2 1 5 5 H 1.48497 * 109.46879 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47271 * 120.00140 * 3 2 1 7 7 C 1.40034 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99934 * 189.89914 * 7 2 1 9 9 C 1.41538 * 119.99673 * 9.63204 * 7 2 1 10 10 C 1.41177 * 121.00107 * 28.50219 * 9 7 2 11 11 C 1.37583 * 119.01684 * 179.97438 * 10 9 7 12 12 N 1.32082 * 121.11053 * 359.97438 * 11 10 9 13 13 C 1.32472 * 122.22999 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.57898 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99743 * 5.05013 * 14 13 12 16 16 O 1.21273 * 120.00328 * 354.94000 * 15 14 13 17 17 C 1.50706 * 119.99846 * 174.94578 * 15 14 13 18 18 H 1.09005 * 109.39599 * 300.16580 * 17 15 14 19 19 C 1.53070 * 109.40308 * 180.42869 * 17 15 14 20 20 C 1.53322 * 108.43893 * 190.98078 * 19 17 15 21 21 C 1.52920 * 108.68735 * 67.50102 * 20 19 17 22 22 N 1.45749 * 110.48851 * 309.25544 * 21 20 19 23 23 C 1.33355 * 124.10651 * 19.10250 * 22 21 20 24 24 O 1.21288 * 118.24267 * 177.74856 * 23 22 21 25 25 C 1.38595 * 120.84207 * 359.73922 * 13 12 11 26 26 H 0.96995 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.48688 * 359.95283 * 10 9 7 28 28 H 1.07998 * 119.44820 * 179.97438 * 11 10 9 29 29 H 0.96999 * 120.00041 * 185.04567 * 14 13 12 30 30 H 1.09008 * 109.66978 * 310.70149 * 19 17 15 31 31 H 1.09000 * 109.67390 * 71.22872 * 19 17 15 32 32 H 1.09009 * 109.58696 * 307.74503 * 20 19 17 33 33 H 1.08999 * 109.74137 * 187.35221 * 20 19 17 34 34 H 1.09002 * 109.29490 * 188.94597 * 21 20 19 35 35 H 1.08996 * 109.29649 * 69.57412 * 21 20 19 36 36 H 0.96998 * 117.94941 * 199.07014 * 22 21 20 37 37 H 1.08003 * 120.60305 * 180.26716 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2763 2.7465 -0.0006 6 1 3.0952 1.6966 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0755 -1.2195 0.1613 9 6 1.3149 -2.4299 -0.2040 10 6 0.1282 -2.4717 -0.9676 11 6 -0.5117 -3.6773 -1.1409 12 7 -0.0337 -4.7866 -0.6067 13 6 1.0753 -4.8011 0.1177 14 7 1.5307 -6.0047 0.6554 15 6 0.9022 -7.1582 0.3536 16 8 -0.1125 -7.1402 -0.3102 17 6 1.4605 -8.4704 0.8411 18 1 2.4676 -8.6044 0.4462 19 6 0.5687 -9.6150 0.3537 20 6 0.9874 -10.8989 1.0796 21 6 0.6365 -10.7606 2.5615 22 7 1.1568 -9.5077 3.0942 23 6 1.5099 -8.4647 2.3420 24 8 1.8917 -7.4577 2.9000 25 6 1.7920 -3.6365 0.3431 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2714 -1.5707 -1.4089 28 1 -1.4203 -3.7172 -1.7234 29 1 2.2998 -6.0117 1.2465 30 1 -0.4737 -9.3895 0.5792 31 1 0.6923 -9.7441 -0.7215 32 1 2.0619 -11.0466 0.9703 33 1 0.4563 -11.7513 0.6559 34 1 1.0700 -11.5945 3.1136 35 1 -0.4470 -10.7796 2.6784 36 1 1.2518 -9.4273 4.0562 37 1 2.6980 -3.6535 0.9308 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601328705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:26 Heat of formation + Delta-G solvation = -63.640979 kcal Electronic energy + Delta-G solvation = -22416.800595 eV Core-core repulsion = 18964.656089 eV Total energy + Delta-G solvation = -3452.144505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.09263 -40.70694 -39.40221 -37.59153 -36.24311 -35.28459 -34.07892 -32.62397 -31.24312 -30.07070 -27.94171 -26.16361 -23.86928 -23.75037 -23.47727 -21.59554 -20.11985 -19.63499 -18.67372 -18.15245 -17.80496 -17.41864 -16.85998 -16.31756 -16.05841 -15.89099 -15.70486 -15.23313 -15.18476 -14.88798 -14.64207 -14.36903 -14.21778 -14.00322 -13.20097 -13.00281 -12.89393 -12.86142 -12.41075 -12.26655 -12.11083 -11.93366 -11.88878 -11.48332 -11.21190 -11.10138 -10.87742 -10.09732 -9.98998 -9.66895 -8.88944 -8.63116 -6.61389 0.66823 0.92929 1.31582 1.39471 1.52387 1.54171 1.76039 2.10023 2.20612 2.34009 2.80179 3.36860 3.47169 3.67491 3.70821 3.85654 4.05714 4.22446 4.25116 4.52843 4.70689 4.76176 4.81680 4.84810 4.89145 5.00959 5.06931 5.09195 5.21720 5.34546 5.44394 5.61291 5.77273 5.92343 6.06882 6.17994 6.40245 6.58187 6.75839 6.79999 7.06854 7.20054 7.77345 8.28230 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.035756 B = 0.003480 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.900191 B = 8045.166062 C = 8535.047571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.034 3.966 3 Si 0.995 3.005 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.487 4.487 8 H 0.086 0.914 9 C 0.120 3.880 10 C -0.238 4.238 11 C 0.097 3.903 12 N -0.574 5.574 13 C 0.343 3.657 14 N -0.643 5.643 15 C 0.507 3.493 16 O -0.515 6.515 17 C -0.116 4.116 18 H 0.157 0.843 19 C -0.104 4.104 20 C -0.128 4.128 21 C 0.099 3.901 22 N -0.702 5.702 23 C 0.524 3.476 24 O -0.588 6.588 25 C -0.313 4.313 26 H 0.292 0.708 27 H 0.120 0.880 28 H 0.145 0.855 29 H 0.423 0.577 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.409 0.591 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -19.577 4.052 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.104 0.896 9 C 0.112 3.888 10 C -0.262 4.262 11 C -0.054 4.054 12 N -0.294 5.294 13 C 0.115 3.885 14 N -0.291 5.291 15 C 0.293 3.707 16 O -0.387 6.387 17 C -0.140 4.140 18 H 0.174 0.826 19 C -0.142 4.142 20 C -0.165 4.165 21 C -0.024 4.024 22 N -0.353 5.353 23 C 0.310 3.690 24 O -0.469 6.469 25 C -0.339 4.339 26 H 0.103 0.897 27 H 0.138 0.862 28 H 0.162 0.838 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.906 -19.847 3.498 20.362 hybrid contribution 0.862 1.880 0.801 2.218 sum 3.768 -17.967 4.299 18.855 Atomic orbital electron populations 1.69807 1.09163 1.31063 1.34739 1.26918 0.95676 1.04844 0.90758 0.85065 0.78549 0.74727 0.80220 1.18081 1.19069 1.18268 1.19861 0.96275 0.90831 1.44823 0.89623 1.17998 0.91332 0.92592 0.86884 1.22205 1.00736 0.97960 1.05261 1.22259 0.98403 0.87843 0.96921 1.67348 1.14286 1.30622 1.17136 1.18370 0.91374 0.85489 0.93289 1.43638 1.33499 1.04276 1.47659 1.20858 0.84048 0.85538 0.80281 1.90763 1.23333 1.86847 1.37758 1.21560 1.05707 0.93545 0.93187 0.82553 1.21553 0.98323 0.92197 1.02114 1.21942 1.03942 0.97193 0.93419 1.21802 0.99973 0.84766 0.95819 1.45371 1.64122 1.14956 1.10873 1.19713 0.76752 0.83122 0.89402 1.90765 1.49573 1.32992 1.73602 1.21445 1.06030 0.92854 1.13547 0.89721 0.86180 0.83780 0.73693 0.92042 0.89446 0.89268 0.86470 0.86637 0.90783 0.75436 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.21 10.83 21.84 0.24 -42.98 16 2 C 0.03 1.72 5.30 85.29 0.45 2.17 16 3 Si 0.99 37.74 29.57 68.60 2.03 39.77 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.49 -26.48 9.12 23.52 0.21 -26.26 16 8 H 0.09 4.40 7.87 -2.91 -0.02 4.37 16 9 C 0.12 6.81 5.58 -21.11 -0.12 6.69 16 10 C -0.24 -13.28 8.76 22.84 0.20 -13.08 16 11 C 0.10 5.17 11.15 84.50 0.94 6.11 16 12 N -0.57 -31.44 7.85 -193.54 -1.52 -32.96 16 13 C 0.34 17.79 7.42 132.75 0.98 18.78 16 14 N -0.64 -27.40 4.98 -308.65 -1.54 -28.94 16 15 C 0.51 19.69 7.02 87.66 0.62 20.30 16 16 O -0.51 -23.92 14.05 -3.01 -0.04 -23.96 16 17 C -0.12 -2.88 2.79 -12.43 -0.03 -2.92 16 18 H 0.16 2.94 8.14 -2.38 -0.02 2.92 16 19 C -0.10 -1.95 4.78 30.73 0.15 -1.80 16 20 C -0.13 -1.09 6.02 30.68 0.18 -0.90 16 21 C 0.10 0.82 7.17 86.49 0.62 1.44 16 22 N -0.70 -11.46 5.45 -467.33 -2.55 -14.00 16 23 C 0.52 13.38 7.28 87.71 0.64 14.01 16 24 O -0.59 -20.12 15.46 -3.05 -0.05 -20.17 16 25 C -0.31 -16.61 9.73 22.99 0.22 -16.39 16 26 H 0.29 13.80 8.29 -92.71 -0.77 13.03 16 27 H 0.12 6.76 6.27 -2.91 -0.02 6.74 16 28 H 0.14 6.81 8.06 -2.91 -0.02 6.79 16 29 H 0.42 16.17 7.15 -92.71 -0.66 15.50 16 30 H 0.06 1.45 7.72 -2.38 -0.02 1.43 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 0.56 8.12 -2.38 -0.02 0.54 16 33 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.41 5.82 8.80 -92.71 -0.82 5.00 16 37 H 0.12 5.61 8.06 -2.91 -0.02 5.59 16 Total: -1.00 -77.98 312.67 1.29 -76.68 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.35 Total: 38.39 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.07 Total: 8.16 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -5.37 Total: -118.88 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.09 Total: -44.13 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -77.98 1.29 -76.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601328705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.043 kcal (2) G-P(sol) polarization free energy of solvation -77.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds