Wall clock time and date at job start Tue Mar 31 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48137 * 110.99919 * 2 1 4 4 C 1.54800 * 101.87448 * 95.47576 * 3 2 1 5 5 H 1.09000 * 110.84996 * 142.18396 * 4 3 2 6 6 N 1.46494 * 110.85215 * 265.60851 * 4 3 2 7 7 C 1.34777 * 120.00090 * 204.99651 * 6 4 3 8 8 O 1.21606 * 120.00091 * 0.02562 * 7 6 4 9 9 C 1.47438 * 120.00197 * 180.02562 * 7 6 4 10 10 C 1.39232 * 120.27953 * 354.15762 * 9 7 6 11 11 C 1.38220 * 120.09105 * 179.97438 * 10 9 7 12 12 C 1.38832 * 120.67072 * 0.02702 * 11 10 9 13 13 C 1.37586 * 120.57658 * 359.97438 * 12 11 10 14 14 C 1.40712 * 119.88163 * 359.74194 * 13 12 11 15 15 C 1.40889 * 120.33089 * 180.25050 * 14 13 12 16 16 H 1.07995 * 119.99688 * 146.08271 * 15 14 13 17 17 C 1.40273 * 120.00038 * 326.08566 * 15 14 13 18 18 N 1.30624 * 120.00067 * 350.68934 * 17 15 14 19 19 Si 1.86799 * 120.00119 * 170.68921 * 17 15 14 20 20 H 1.48502 * 109.47056 * 89.99523 * 19 17 15 21 21 H 1.48499 * 109.47450 * 210.00055 * 19 17 15 22 22 H 1.48498 * 109.46898 * 329.99848 * 19 17 15 23 23 C 1.51808 * 102.23221 * 24.00102 * 4 3 2 24 24 O 1.21277 * 126.04217 * 165.15441 * 23 4 3 25 25 N 1.34597 * 107.91853 * 345.17291 * 23 4 3 26 26 H 1.08997 * 109.47121 * 59.99981 * 1 2 3 27 27 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47369 * 299.99945 * 1 2 3 29 29 H 1.09004 * 110.95138 * 213.62146 * 3 2 1 30 30 H 1.08997 * 110.95092 * 337.33007 * 3 2 1 31 31 H 0.97004 * 120.00319 * 24.99890 * 6 4 3 32 32 H 1.07995 * 119.95280 * 359.95785 * 10 9 7 33 33 H 1.07993 * 119.66169 * 179.97438 * 11 10 9 34 34 H 1.08004 * 119.70491 * 179.97438 * 12 11 10 35 35 H 1.08006 * 120.06242 * 179.97438 * 13 12 11 36 36 H 0.97004 * 120.00082 * 180.02562 * 18 17 15 37 37 H 0.97004 * 123.52206 * 178.41006 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3830 0.0000 4 6 2.2489 1.6286 1.5080 5 1 3.1592 2.2081 1.6615 6 7 1.0992 2.2947 2.1247 7 6 1.2672 3.0368 3.2372 8 8 2.3733 3.1537 3.7287 9 6 0.1100 3.7067 3.8582 10 6 -1.1351 3.6781 3.2357 11 6 -2.2175 4.3071 3.8217 12 6 -2.0796 4.9730 5.0321 13 6 -0.8620 5.0186 5.6711 14 6 0.2544 4.3813 5.0988 15 6 1.5045 4.4176 5.7476 16 1 2.1743 3.5734 5.6767 17 6 1.8790 5.5501 6.4857 18 7 1.1575 6.6373 6.4249 19 14 3.4096 5.5035 7.5555 20 1 4.5840 5.9409 6.7587 21 1 3.2311 6.4141 8.7149 22 1 3.6305 4.1185 8.0433 23 6 2.4111 0.2165 2.0413 24 8 2.8687 -0.0900 3.1218 25 7 1.9576 -0.6352 1.1029 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.9309 1.4431 -0.5637 30 1 1.2626 2.0834 -0.3923 31 1 0.2169 2.2017 1.7325 32 1 -1.2552 3.1640 2.2936 33 1 -3.1799 4.2809 3.3326 34 1 -2.9357 5.4595 5.4758 35 1 -0.7640 5.5394 6.6122 36 1 1.4167 7.4206 6.9351 37 1 1.9764 -1.6001 1.2012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601406886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:05 Heat of formation + Delta-G solvation = -24.313236 kcal Electronic energy + Delta-G solvation = -23044.521071 eV Core-core repulsion = 19594.081945 eV Total energy + Delta-G solvation = -3450.439127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.41403 -40.49442 -38.62624 -38.55848 -35.88729 -35.27111 -32.37618 -32.12603 -31.63761 -30.36747 -27.41232 -26.44860 -24.28462 -23.65090 -22.84273 -22.02849 -21.35211 -19.51857 -18.84851 -18.04309 -17.99823 -17.14931 -16.64584 -16.27618 -16.18119 -15.99316 -15.55561 -15.27247 -14.93372 -14.80004 -14.53439 -14.51727 -14.02124 -13.62428 -13.50118 -13.39595 -12.90441 -12.89681 -12.55016 -12.47018 -12.32781 -11.96867 -11.82414 -11.51931 -11.25514 -11.17285 -10.38478 -10.13164 -9.48174 -9.39102 -9.26733 -8.71366 -6.40002 0.46840 0.98811 1.09941 1.29812 1.42846 1.46321 1.74247 2.18365 2.26512 2.35767 2.73675 3.00147 3.36092 3.39700 3.70545 4.01548 4.20845 4.31258 4.46013 4.52799 4.57562 4.69031 4.73628 4.88594 4.99749 5.06143 5.18936 5.22884 5.30771 5.42764 5.58602 5.78696 5.82089 6.00701 6.07885 6.31197 6.39885 6.55600 6.71449 6.86460 6.95560 7.10056 7.54592 8.25932 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.005504 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.088289 B = 5085.680545 C = 6285.369837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.284 5.284 3 C 0.035 3.965 4 C 0.080 3.920 5 H 0.108 0.892 6 N -0.710 5.710 7 C 0.559 3.441 8 O -0.566 6.566 9 C -0.282 4.282 10 C -0.052 4.052 11 C -0.233 4.233 12 C -0.091 4.091 13 C -0.176 4.176 14 C 0.114 3.886 15 C -0.458 4.458 16 H 0.074 0.926 17 C 0.036 3.964 18 N -0.818 5.818 19 Si 0.974 3.026 20 H -0.269 1.269 21 H -0.251 1.251 22 H -0.271 1.271 23 C 0.481 3.519 24 O -0.562 6.562 25 N -0.557 5.557 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.409 0.591 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.290 0.710 37 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 -8.266 -15.265 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 N -0.101 5.101 3 C -0.092 4.092 4 C -0.030 4.030 5 H 0.126 0.874 6 N -0.368 5.368 7 C 0.353 3.647 8 O -0.446 6.446 9 C -0.287 4.287 10 C -0.071 4.071 11 C -0.252 4.252 12 C -0.110 4.110 13 C -0.195 4.195 14 C 0.110 3.890 15 C -0.487 4.487 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.444 5.444 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.175 1.175 22 H -0.195 1.195 23 C 0.264 3.736 24 O -0.436 6.436 25 N -0.306 5.306 26 H 0.139 0.861 27 H 0.108 0.892 28 H 0.046 0.954 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.249 0.751 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -3.598 -8.276 -14.691 17.242 hybrid contribution 0.200 0.178 1.502 1.525 sum -3.397 -8.098 -13.190 15.846 Atomic orbital electron populations 1.23493 0.85847 1.04796 1.03090 1.65060 1.09460 1.14834 1.20775 1.24173 1.05883 0.88558 0.90580 1.22194 0.93614 0.90966 0.96272 0.87408 1.45613 1.10486 1.51562 1.29127 1.18622 0.88816 0.77763 0.79517 1.90700 1.28125 1.62908 1.62865 1.19754 0.94190 1.15715 0.99021 1.21045 0.91144 0.96792 0.98096 1.20829 0.99095 1.06650 0.98581 1.21211 0.96346 0.97588 0.95817 1.21293 0.92402 1.04813 1.01000 1.17861 0.93444 0.88341 0.89350 1.20075 1.01978 1.01842 1.24817 0.90814 1.26700 1.01260 0.94189 0.95822 1.69717 1.38171 1.02406 1.34154 0.85330 0.77800 0.79130 0.78151 1.19412 1.17497 1.19516 1.22322 0.77300 0.90532 0.83459 1.90769 1.46967 1.83117 1.22785 1.45913 1.60985 1.09321 1.14421 0.86100 0.89188 0.95354 0.84234 0.84712 0.75119 0.84703 0.84496 0.86039 0.88208 0.89874 0.71811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.27 9.74 127.69 1.24 0.98 16 2 N -0.28 -4.30 5.88 -530.82 -3.12 -7.42 16 3 C 0.04 0.54 6.78 86.68 0.59 1.13 16 4 C 0.08 2.34 3.43 45.21 0.15 2.49 16 5 H 0.11 3.68 7.54 -2.39 -0.02 3.66 16 6 N -0.71 -23.54 5.02 -444.74 -2.23 -25.77 16 7 C 0.56 26.52 7.72 86.67 0.67 27.19 16 8 O -0.57 -32.35 13.24 -4.05 -0.05 -32.41 16 9 C -0.28 -13.79 5.92 -19.70 -0.12 -13.91 16 10 C -0.05 -2.01 9.52 22.50 0.21 -1.80 16 11 C -0.23 -8.70 10.03 22.41 0.22 -8.48 16 12 C -0.09 -3.88 10.01 22.26 0.22 -3.66 16 13 C -0.18 -9.11 8.62 22.72 0.20 -8.91 16 14 C 0.11 6.39 5.51 -21.11 -0.12 6.27 16 15 C -0.46 -27.41 7.67 23.41 0.18 -27.23 16 16 H 0.07 4.76 5.93 -2.91 -0.02 4.74 16 17 C 0.04 1.95 5.25 85.37 0.45 2.40 16 18 N -0.82 -44.33 11.13 21.88 0.24 -44.09 16 19 Si 0.97 43.53 29.57 68.60 2.03 45.55 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 C 0.48 15.84 8.30 88.04 0.73 16.57 16 24 O -0.56 -25.44 18.03 -3.02 -0.05 -25.49 16 25 N -0.56 -11.93 5.96 -172.81 -1.03 -12.96 16 26 H 0.12 0.66 8.11 -2.39 -0.02 0.64 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.03 0.41 6.49 -2.38 -0.02 0.39 16 29 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.13 1.35 7.70 -2.39 -0.02 1.34 16 31 H 0.41 10.43 5.15 -92.71 -0.48 9.96 16 32 H 0.14 3.76 6.44 -2.91 -0.02 3.74 16 33 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.10 5.42 6.58 -2.91 -0.02 5.40 16 36 H 0.29 14.15 8.29 -92.71 -0.77 13.38 16 37 H 0.44 7.73 8.96 -215.65 -1.93 5.80 16 Total: -1.00 -81.23 312.24 -0.85 -82.08 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -1.27 Total: 27.46 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.64 Total: -6.96 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -6.14 Total: -90.24 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -0.11 Total: -57.90 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -81.23 -0.85 -82.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.768 kcal (2) G-P(sol) polarization free energy of solvation -81.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds