Wall clock time and date at job start Tue Mar 31 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48138 * 111.00222 * 2 1 4 4 C 1.54794 * 101.88092 * 211.88387 * 3 2 1 5 5 H 1.09000 * 110.85357 * 265.61487 * 4 3 2 6 6 N 1.46499 * 110.85501 * 142.18012 * 4 3 2 7 7 C 1.34773 * 119.99803 * 154.99708 * 6 4 3 8 8 O 1.21612 * 120.00214 * 0.02562 * 7 6 4 9 9 C 1.47430 * 119.99768 * 180.02562 * 7 6 4 10 10 C 1.39223 * 120.28647 * 354.09967 * 9 7 6 11 11 C 1.38219 * 120.09438 * 180.29206 * 10 9 7 12 12 C 1.38821 * 120.67560 * 359.45286 * 11 10 9 13 13 C 1.37592 * 120.57052 * 0.25095 * 12 11 10 14 14 C 1.40707 * 119.88277 * 0.02562 * 13 12 11 15 15 C 1.40887 * 120.32714 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99692 * 143.12270 * 15 14 13 17 17 C 1.40278 * 120.00316 * 323.12116 * 15 14 13 18 18 N 1.30623 * 119.99961 * 169.95613 * 17 15 14 19 19 Si 1.86801 * 119.99725 * 349.95212 * 17 15 14 20 20 H 1.48497 * 109.46948 * 86.30850 * 19 17 15 21 21 H 1.48500 * 109.47315 * 206.31003 * 19 17 15 22 22 H 1.48508 * 109.47138 * 326.31067 * 19 17 15 23 23 C 1.51810 * 102.22925 * 23.99762 * 4 3 2 24 24 O 1.21282 * 126.03819 * 165.17900 * 23 4 3 25 25 N 1.34600 * 107.92216 * 345.17985 * 23 4 3 26 26 H 1.08997 * 109.47064 * 59.99529 * 1 2 3 27 27 H 1.08996 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46909 * 299.99704 * 1 2 3 29 29 H 1.08996 * 110.94910 * 93.73458 * 3 2 1 30 30 H 1.09001 * 110.97807 * 330.04538 * 3 2 1 31 31 H 0.97002 * 119.99757 * 335.00897 * 6 4 3 32 32 H 1.08001 * 119.95386 * 0.04688 * 10 9 7 33 33 H 1.08000 * 119.66264 * 179.72339 * 11 10 9 34 34 H 1.08000 * 119.71443 * 180.27803 * 12 11 10 35 35 H 1.08003 * 120.05985 * 180.02562 * 13 12 11 36 36 H 0.97002 * 119.99732 * 179.97438 * 18 17 15 37 37 H 0.96996 * 123.52476 * 178.38674 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 3.3149 1.2195 -0.8001 5 1 4.1600 1.0623 -0.1298 6 7 3.5469 2.3791 -1.6649 7 6 4.8002 2.6954 -2.0460 8 8 5.7387 2.0181 -1.6725 9 6 5.0337 3.8627 -2.9159 10 6 3.9578 4.5691 -3.4466 11 6 4.1812 5.6592 -4.2665 12 6 5.4739 6.0701 -4.5619 13 6 6.5573 5.3958 -4.0474 14 6 6.3573 4.2794 -3.2147 15 6 7.4599 3.5817 -2.6832 16 1 7.4126 3.1793 -1.6821 17 6 8.6191 3.4097 -3.4543 18 7 9.7064 2.9405 -2.9031 19 14 8.6075 3.8514 -5.2693 20 1 8.9201 5.2943 -5.4295 21 1 9.6279 3.0418 -5.9823 22 1 7.2653 3.5695 -5.8388 23 6 3.0364 -0.0234 -1.6261 24 8 3.6734 -0.3988 -2.5874 25 7 1.9576 -0.6352 -1.1030 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2015 1.7230 1.0158 30 1 1.3166 2.0633 -0.5082 31 1 2.7983 2.9192 -1.9629 32 1 2.9472 4.2626 -3.2206 33 1 3.3415 6.1995 -4.6781 34 1 5.6306 6.9268 -5.2007 35 1 7.5595 5.7229 -4.2822 36 1 10.5079 2.8212 -3.4364 37 1 1.5683 -1.4432 -1.4723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601406887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:09 Heat of formation + Delta-G solvation = 6.393980 kcal Electronic energy + Delta-G solvation = -22834.801601 eV Core-core repulsion = 19385.694039 eV Total energy + Delta-G solvation = -3449.107562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09014 -38.89523 -37.34147 -36.93923 -34.29751 -33.51301 -31.55262 -30.82045 -30.45726 -29.14898 -25.65230 -25.04614 -22.97273 -22.49435 -21.46275 -20.50820 -19.64743 -17.91280 -17.49471 -16.94397 -16.40985 -15.93430 -15.32040 -14.96502 -14.53940 -14.17331 -14.09741 -14.03250 -13.94038 -13.57430 -13.29043 -12.83588 -12.67693 -12.58016 -12.37863 -11.96646 -11.58509 -11.49931 -11.00605 -10.89248 -10.73945 -10.45670 -10.21391 -10.07016 -9.79538 -9.20630 -8.62462 -8.50432 -8.22463 -7.84370 -7.59074 -6.88985 -4.45840 2.08865 2.48747 2.59970 2.70659 3.11217 3.20705 3.32317 3.48046 3.91343 3.99247 4.28209 4.32638 4.46479 4.65285 4.75825 5.00551 5.06172 5.38023 5.39697 5.45457 5.60764 5.73609 5.75889 5.95398 6.05609 6.35654 6.51223 6.78858 6.84928 6.90649 7.10101 7.22375 7.38009 7.40884 7.57338 7.73675 8.00941 8.18473 8.26229 8.47759 8.63048 8.83768 9.28546 10.09172 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.004895 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.980515 B = 5719.241778 C = 6451.769419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.282 5.282 3 C 0.013 3.987 4 C 0.118 3.882 5 H 0.135 0.865 6 N -0.732 5.732 7 C 0.565 3.435 8 O -0.511 6.511 9 C -0.247 4.247 10 C -0.041 4.041 11 C -0.255 4.255 12 C -0.064 4.064 13 C -0.230 4.230 14 C 0.117 3.883 15 C -0.394 4.394 16 H 0.116 0.884 17 C 0.080 3.920 18 N -0.792 5.792 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.246 1.246 23 C 0.499 3.501 24 O -0.495 6.495 25 N -0.588 5.588 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.394 0.606 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.287 0.713 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 -1.278 4.353 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 N -0.100 5.100 3 C -0.115 4.115 4 C 0.007 3.993 5 H 0.152 0.848 6 N -0.389 5.389 7 C 0.359 3.641 8 O -0.386 6.386 9 C -0.252 4.252 10 C -0.060 4.060 11 C -0.275 4.275 12 C -0.082 4.082 13 C -0.249 4.249 14 C 0.112 3.888 15 C -0.420 4.420 16 H 0.134 0.866 17 C -0.141 4.141 18 N -0.415 5.415 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.170 1.170 23 C 0.282 3.718 24 O -0.364 6.364 25 N -0.339 5.339 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.193 -2.270 4.587 16.032 hybrid contribution -1.030 0.487 -1.717 2.061 sum -16.223 -1.783 2.869 16.571 Atomic orbital electron populations 1.23178 0.87391 1.03475 1.02484 1.66001 1.08311 1.13437 1.22299 1.24056 0.95041 0.89108 1.03283 1.21624 0.99145 0.85967 0.92515 0.84750 1.45835 1.10013 1.29260 1.53745 1.18396 0.81074 0.84630 0.80025 1.90783 1.40977 1.52156 1.54725 1.19336 0.94110 1.00362 1.11360 1.20744 0.95840 0.94239 0.95149 1.20270 0.95753 1.02701 1.08738 1.20743 0.93095 0.97538 0.96858 1.21272 0.97681 0.99067 1.06853 1.17526 0.91684 0.90462 0.89100 1.19995 0.93479 1.25442 1.03133 0.86606 1.26330 0.93870 0.92286 1.01611 1.69555 1.01435 1.31532 1.38992 0.86370 0.79814 0.78387 0.81683 1.19198 1.21583 1.16969 1.21694 0.79937 0.86256 0.83942 1.90829 1.50790 1.68919 1.25842 1.46025 1.31117 1.28145 1.28657 0.94120 0.90306 0.89059 0.86217 0.91123 0.77065 0.88917 0.88549 0.88537 0.87359 0.90200 0.73954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.10 9.82 60.07 0.59 0.49 16 2 N -0.28 -2.66 5.86 -119.14 -0.70 -3.35 16 3 C 0.01 0.13 6.79 -2.20 -0.01 0.11 16 4 C 0.12 1.77 3.49 -67.59 -0.24 1.54 16 5 H 0.14 2.24 7.54 -51.93 -0.39 1.85 16 6 N -0.73 -12.54 5.11 -54.55 -0.28 -12.82 16 7 C 0.57 13.06 7.71 -12.52 -0.10 12.96 16 8 O -0.51 -13.95 13.30 5.27 0.07 -13.88 16 9 C -0.25 -5.85 5.92 -104.37 -0.62 -6.47 16 10 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 11 C -0.26 -5.01 10.03 -39.37 -0.39 -5.40 16 12 C -0.06 -1.33 10.01 -39.60 -0.40 -1.73 16 13 C -0.23 -5.47 7.17 -38.89 -0.28 -5.75 16 14 C 0.12 3.05 5.03 -106.54 -0.54 2.52 16 15 C -0.39 -11.22 8.12 -37.81 -0.31 -11.53 16 16 H 0.12 3.61 6.29 -52.48 -0.33 3.28 16 17 C 0.08 2.18 5.48 -17.30 -0.09 2.08 16 18 N -0.79 -21.95 13.92 55.56 0.77 -21.17 16 19 Si 0.91 21.47 24.57 -169.99 -4.18 17.29 16 20 H -0.27 -5.86 6.46 56.52 0.36 -5.50 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.25 -6.04 7.02 56.52 0.40 -5.64 16 23 C 0.50 8.29 8.29 -10.52 -0.09 8.20 16 24 O -0.49 -10.83 18.03 5.56 0.10 -10.73 16 25 N -0.59 -6.86 6.01 31.48 0.19 -6.67 16 26 H 0.04 0.25 8.10 -51.93 -0.42 -0.17 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.56 7.53 -51.93 -0.39 0.17 16 31 H 0.39 5.53 6.51 -40.82 -0.27 5.27 16 32 H 0.09 1.48 6.44 -52.49 -0.34 1.14 16 33 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.11 2.54 4.87 -52.48 -0.26 2.29 16 36 H 0.29 7.17 8.29 -40.82 -0.34 6.83 16 37 H 0.42 4.01 8.90 -185.35 -1.65 2.36 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -34.67 309.76 -7.53 -42.20 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.33 Total: 8.65 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.84 Total: -4.17 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.01 Total: -44.02 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.18 Total: 17.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.67 -7.53 -42.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.591 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds