Wall clock time and date at job start Tue Mar 31 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48138 * 111.00222 * 2 1 4 4 C 1.54794 * 101.88092 * 211.88387 * 3 2 1 5 5 H 1.09000 * 110.85357 * 265.61487 * 4 3 2 6 6 N 1.46499 * 110.85501 * 142.18012 * 4 3 2 7 7 C 1.34773 * 119.99803 * 154.99708 * 6 4 3 8 8 O 1.21612 * 120.00214 * 0.02562 * 7 6 4 9 9 C 1.47430 * 119.99768 * 180.02562 * 7 6 4 10 10 C 1.39223 * 120.28647 * 354.09967 * 9 7 6 11 11 C 1.38219 * 120.09438 * 180.29206 * 10 9 7 12 12 C 1.38821 * 120.67560 * 359.45286 * 11 10 9 13 13 C 1.37592 * 120.57052 * 0.25095 * 12 11 10 14 14 C 1.40707 * 119.88277 * 0.02562 * 13 12 11 15 15 C 1.40887 * 120.32714 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99692 * 143.12270 * 15 14 13 17 17 C 1.40278 * 120.00316 * 323.12116 * 15 14 13 18 18 N 1.30623 * 119.99961 * 169.95613 * 17 15 14 19 19 Si 1.86801 * 119.99725 * 349.95212 * 17 15 14 20 20 H 1.48497 * 109.46948 * 86.30850 * 19 17 15 21 21 H 1.48500 * 109.47315 * 206.31003 * 19 17 15 22 22 H 1.48508 * 109.47138 * 326.31067 * 19 17 15 23 23 C 1.51810 * 102.22925 * 23.99762 * 4 3 2 24 24 O 1.21282 * 126.03819 * 165.17900 * 23 4 3 25 25 N 1.34600 * 107.92216 * 345.17985 * 23 4 3 26 26 H 1.08997 * 109.47064 * 59.99529 * 1 2 3 27 27 H 1.08996 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46909 * 299.99704 * 1 2 3 29 29 H 1.08996 * 110.94910 * 93.73458 * 3 2 1 30 30 H 1.09001 * 110.97807 * 330.04538 * 3 2 1 31 31 H 0.97002 * 119.99757 * 335.00897 * 6 4 3 32 32 H 1.08001 * 119.95386 * 0.04688 * 10 9 7 33 33 H 1.08000 * 119.66264 * 179.72339 * 11 10 9 34 34 H 1.08000 * 119.71443 * 180.27803 * 12 11 10 35 35 H 1.08003 * 120.05985 * 180.02562 * 13 12 11 36 36 H 0.97002 * 119.99732 * 179.97438 * 18 17 15 37 37 H 0.96996 * 123.52476 * 178.38674 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 3.3149 1.2195 -0.8001 5 1 4.1600 1.0623 -0.1298 6 7 3.5469 2.3791 -1.6649 7 6 4.8002 2.6954 -2.0460 8 8 5.7387 2.0181 -1.6725 9 6 5.0337 3.8627 -2.9159 10 6 3.9578 4.5691 -3.4466 11 6 4.1812 5.6592 -4.2665 12 6 5.4739 6.0701 -4.5619 13 6 6.5573 5.3958 -4.0474 14 6 6.3573 4.2794 -3.2147 15 6 7.4599 3.5817 -2.6832 16 1 7.4126 3.1793 -1.6821 17 6 8.6191 3.4097 -3.4543 18 7 9.7064 2.9405 -2.9031 19 14 8.6075 3.8514 -5.2693 20 1 8.9201 5.2943 -5.4295 21 1 9.6279 3.0418 -5.9823 22 1 7.2653 3.5695 -5.8388 23 6 3.0364 -0.0234 -1.6261 24 8 3.6734 -0.3988 -2.5874 25 7 1.9576 -0.6352 -1.1030 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2015 1.7230 1.0158 30 1 1.3166 2.0633 -0.5082 31 1 2.7983 2.9192 -1.9629 32 1 2.9472 4.2626 -3.2206 33 1 3.3415 6.1995 -4.6781 34 1 5.6306 6.9268 -5.2007 35 1 7.5595 5.7229 -4.2822 36 1 10.5079 2.8212 -3.4364 37 1 1.5683 -1.4432 -1.4723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601406887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:08 Heat of formation + Delta-G solvation = -23.477530 kcal Electronic energy + Delta-G solvation = -22836.096927 eV Core-core repulsion = 19385.694039 eV Total energy + Delta-G solvation = -3450.402888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -42.22250 -40.60571 -38.73744 -38.55881 -35.93918 -35.32528 -32.46448 -32.37910 -32.27996 -30.48779 -27.29168 -26.13491 -24.31421 -23.77453 -23.10096 -21.94220 -21.28211 -19.51444 -18.92883 -18.40153 -17.68903 -17.23790 -17.11440 -16.24713 -16.02542 -15.81297 -15.56079 -15.43571 -15.08811 -14.88837 -14.78538 -14.49520 -14.16075 -13.81471 -13.70950 -13.29492 -13.16898 -12.66585 -12.59937 -12.43040 -12.20974 -12.04159 -12.02737 -11.64951 -11.55788 -11.04557 -10.46147 -10.03877 -9.55556 -9.42177 -9.14840 -8.84057 -6.48160 0.32102 0.82145 1.20848 1.21584 1.35433 1.43954 1.71449 2.08088 2.18031 2.24335 2.69328 3.17910 3.27852 3.50215 3.57235 3.95304 4.16193 4.22682 4.38899 4.46853 4.54123 4.65131 4.72336 4.76701 4.83775 4.97682 4.99947 5.01337 5.29150 5.41006 5.45323 5.66843 5.84597 5.92221 5.94186 6.25383 6.37004 6.44540 6.60175 6.76894 6.83386 7.13650 7.56344 8.21953 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.004895 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.980515 B = 5719.241778 C = 6451.769419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.290 5.290 3 C 0.031 3.969 4 C 0.107 3.893 5 H 0.108 0.892 6 N -0.709 5.709 7 C 0.558 3.442 8 O -0.567 6.567 9 C -0.266 4.266 10 C -0.039 4.039 11 C -0.228 4.228 12 C -0.060 4.060 13 C -0.251 4.251 14 C 0.100 3.900 15 C -0.444 4.444 16 H 0.064 0.936 17 C 0.035 3.965 18 N -0.850 5.850 19 Si 0.968 3.032 20 H -0.238 1.238 21 H -0.280 1.280 22 H -0.261 1.261 23 C 0.488 3.512 24 O -0.563 6.563 25 N -0.564 5.564 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.145 0.855 30 H 0.101 0.899 31 H 0.413 0.587 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.293 0.707 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.043 1.031 3.309 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 N -0.109 5.109 3 C -0.097 4.097 4 C -0.003 4.003 5 H 0.126 0.874 6 N -0.365 5.365 7 C 0.351 3.649 8 O -0.446 6.446 9 C -0.270 4.270 10 C -0.057 4.057 11 C -0.247 4.247 12 C -0.078 4.078 13 C -0.270 4.270 14 C 0.096 3.904 15 C -0.473 4.473 16 H 0.082 0.918 17 C -0.179 4.179 18 N -0.477 5.477 19 Si 0.791 3.209 20 H -0.162 1.162 21 H -0.207 1.207 22 H -0.185 1.185 23 C 0.272 3.728 24 O -0.438 6.438 25 N -0.312 5.312 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.119 0.881 31 H 0.252 0.748 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -20.546 0.052 3.591 20.858 hybrid contribution 0.108 -0.171 -1.278 1.294 sum -20.438 -0.119 2.313 20.569 Atomic orbital electron populations 1.23328 0.84286 1.04938 1.04009 1.66015 1.10960 1.13323 1.20642 1.24145 0.91896 0.89750 1.03906 1.21799 1.01493 0.84812 0.92166 0.87401 1.45442 1.08522 1.29649 1.52890 1.18597 0.82257 0.84331 0.79726 1.90779 1.43324 1.53784 1.56712 1.19775 0.94719 1.01042 1.11514 1.21228 0.96875 0.93634 0.94008 1.20967 0.96784 1.01202 1.05770 1.21279 0.92662 0.97827 0.96011 1.21373 0.99059 0.99021 1.07547 1.17812 0.92077 0.90819 0.89681 1.19763 0.96122 1.29077 1.02362 0.91786 1.27060 0.93243 0.92171 1.05381 1.69614 1.02318 1.35234 1.40521 0.85522 0.78941 0.79793 0.76652 1.16184 1.20688 1.18506 1.21888 0.80648 0.86931 0.83381 1.90790 1.53329 1.70720 1.28985 1.45903 1.29452 1.27944 1.27927 0.93404 0.89091 0.86513 0.83710 0.88132 0.74827 0.84090 0.83493 0.84380 0.87643 0.89686 0.72631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.13 9.82 127.69 1.25 1.12 16 2 N -0.29 -4.49 5.86 -530.84 -3.11 -7.60 16 3 C 0.03 0.48 6.79 86.68 0.59 1.06 16 4 C 0.11 3.21 3.49 45.21 0.16 3.36 16 5 H 0.11 3.83 7.54 -2.39 -0.02 3.81 16 6 N -0.71 -23.76 5.11 -444.75 -2.27 -26.03 16 7 C 0.56 26.74 7.71 86.67 0.67 27.40 16 8 O -0.57 -33.75 13.30 -4.07 -0.05 -33.81 16 9 C -0.27 -12.59 5.92 -19.70 -0.12 -12.70 16 10 C -0.04 -1.39 9.52 22.50 0.21 -1.17 16 11 C -0.23 -7.53 10.03 22.40 0.22 -7.31 16 12 C -0.06 -2.21 10.01 22.26 0.22 -1.98 16 13 C -0.25 -11.69 7.17 22.72 0.16 -11.53 16 14 C 0.10 5.38 5.03 -21.11 -0.11 5.28 16 15 C -0.44 -27.58 8.12 23.41 0.19 -27.39 16 16 H 0.06 4.50 6.29 -2.91 -0.02 4.49 16 17 C 0.04 2.06 5.48 85.37 0.47 2.53 16 18 N -0.85 -51.45 13.92 21.88 0.30 -51.14 16 19 Si 0.97 45.95 24.57 68.60 1.69 47.63 16 20 H -0.24 -10.00 6.46 99.48 0.64 -9.36 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.26 -12.75 7.02 99.48 0.70 -12.05 16 23 C 0.49 16.39 8.29 88.04 0.73 17.12 16 24 O -0.56 -25.94 18.03 -3.04 -0.05 -25.99 16 25 N -0.56 -12.21 6.01 -172.80 -1.04 -13.25 16 26 H 0.05 0.34 8.10 -2.39 -0.02 0.32 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.03 7.53 -2.39 -0.02 1.01 16 31 H 0.41 10.20 6.51 -92.71 -0.60 9.60 16 32 H 0.14 3.61 6.44 -2.91 -0.02 3.59 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 35 H 0.11 4.89 4.87 -2.91 -0.01 4.88 16 36 H 0.29 15.86 8.29 -92.71 -0.77 15.09 16 37 H 0.43 7.50 8.90 -215.66 -1.92 5.59 16 Total: -1.00 -88.05 309.76 -1.34 -89.39 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -1.46 Total: 25.01 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.66 Total: -4.21 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -6.12 Total: -98.03 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -0.11 Total: -59.80 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.69 Total: 47.63 kcal Total: -88.05 -1.34 -89.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.911 kcal (2) G-P(sol) polarization free energy of solvation -88.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds