Wall clock time and date at job start Tue Mar 31 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00194 * 2 1 4 4 C 1.53002 * 109.47255 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47319 * 64.99786 * 4 3 2 6 6 C 1.36828 * 119.99957 * 270.00064 * 5 4 3 7 7 H 1.07996 * 120.00440 * 136.65910 * 6 5 4 8 8 C 1.38986 * 119.99870 * 316.66589 * 6 5 4 9 9 N 1.31416 * 119.99925 * 169.23702 * 8 6 5 10 10 Si 1.86798 * 119.99772 * 349.23680 * 8 6 5 11 11 H 1.48495 * 109.47028 * 95.14135 * 10 8 6 12 12 H 1.48498 * 109.47072 * 215.14058 * 10 8 6 13 13 H 1.48502 * 109.47214 * 335.13999 * 10 8 6 14 14 C 1.34774 * 119.99947 * 90.00068 * 5 4 3 15 15 O 1.21829 * 120.00242 * 4.30322 * 14 5 4 16 16 C 1.46128 * 119.99696 * 184.30986 * 14 5 4 17 17 N 1.32597 * 125.57112 * 356.00649 * 16 14 5 18 18 C 1.32012 * 109.87278 * 180.02562 * 17 16 14 19 19 C 1.39451 * 107.94379 * 0.02562 * 18 17 16 20 20 C 1.40351 * 133.41241 * 180.02562 * 19 18 17 21 21 C 1.36389 * 119.19395 * 179.97438 * 20 19 18 22 22 C 1.40295 * 119.59114 * 359.97438 * 21 20 19 23 23 C 1.35206 * 120.38611 * 0.26158 * 22 21 20 24 24 N 1.36180 * 120.59587 * 359.48438 * 23 22 21 25 25 H 1.09003 * 109.46746 * 300.00313 * 1 2 3 26 26 H 1.09005 * 109.46811 * 60.00177 * 1 2 3 27 27 H 1.08992 * 109.46825 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47543 * 59.99291 * 3 2 1 29 29 H 1.09003 * 109.46771 * 299.99764 * 3 2 1 30 30 H 1.09001 * 109.46937 * 304.99354 * 4 3 2 31 31 H 1.09004 * 109.46701 * 184.99850 * 4 3 2 32 32 H 0.97001 * 119.99998 * 180.02562 * 9 8 6 33 33 H 1.07994 * 126.02889 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.40472 * 0.02562 * 20 19 18 35 35 H 1.07999 * 120.20779 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.80601 * 179.97438 * 22 21 20 37 37 H 1.08006 * 119.70309 * 179.71716 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.0967 -0.7960 -1.3367 7 1 3.7353 -1.3173 -2.2107 8 6 4.6847 -1.5069 -0.2972 9 7 4.6135 -2.8189 -0.2757 10 14 5.5760 -0.5972 1.0694 11 1 4.6501 -0.3892 2.2115 12 1 6.7432 -1.3983 1.5179 13 1 6.0435 0.7190 0.5650 14 6 4.2616 1.3336 -2.3218 15 8 4.2299 2.5476 -2.2247 16 6 4.6095 0.7115 -3.5974 17 7 4.7500 -0.5901 -3.8079 18 6 5.0673 -0.8088 -5.0705 19 6 5.1370 0.4254 -5.7160 20 6 5.4259 0.8093 -7.0347 21 6 5.4123 2.1337 -7.3602 22 6 5.1105 3.0861 -6.3752 23 6 4.8394 2.6979 -5.1088 24 7 4.8446 1.3784 -4.7721 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9786 2.1766 0.0889 32 1 5.0236 -3.3150 0.4500 33 1 5.2422 -1.7733 -5.5236 34 1 5.6553 0.0649 -7.7829 35 1 5.6326 2.4474 -8.3699 36 1 5.0992 4.1357 -6.6290 37 1 4.6129 3.4408 -4.3582 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601625373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:45 Heat of formation + Delta-G solvation = 21.475424 kcal Electronic energy + Delta-G solvation = -23373.607598 eV Core-core repulsion = 19925.154017 eV Total energy + Delta-G solvation = -3448.453581 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.70080 -40.64742 -38.64738 -38.28718 -36.76784 -34.21724 -33.85889 -32.13105 -31.17473 -29.11023 -27.28127 -26.77058 -25.14305 -24.54175 -23.47093 -23.03253 -21.10509 -19.68763 -18.18729 -17.81493 -17.63429 -17.41114 -17.02324 -16.96564 -16.41843 -16.29011 -16.07414 -15.64385 -15.45934 -15.30255 -14.77061 -14.40067 -14.23914 -13.65283 -13.30679 -13.12967 -13.10997 -12.88882 -12.62806 -12.61563 -12.41543 -12.03567 -11.69602 -11.64430 -11.21632 -10.92034 -10.65407 -10.49623 -10.25571 -9.67790 -8.40655 -8.27952 -5.93952 -0.07418 -0.02599 1.18060 1.26733 1.36758 1.45194 1.50343 2.24581 2.53074 2.58739 2.62966 2.92414 3.16376 3.58823 3.73446 3.87615 3.92843 4.02008 4.05606 4.08899 4.24801 4.33892 4.41744 4.51402 4.53921 4.59382 4.69347 4.82330 4.82806 4.97246 5.16015 5.28183 5.48476 5.62388 5.73322 6.10122 6.18162 6.36283 6.55473 6.84824 7.15404 7.41701 7.66273 8.84766 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.006028 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.008595 B = 4643.926700 C = 5153.561287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.061 3.939 4 C 0.093 3.907 5 N -0.441 5.441 6 C -0.289 4.289 7 H 0.103 0.897 8 C 0.025 3.975 9 N -0.906 5.906 10 Si 0.923 3.077 11 H -0.255 1.255 12 H -0.290 1.290 13 H -0.271 1.271 14 C 0.549 3.451 15 O -0.622 6.622 16 C 0.060 3.940 17 N -0.395 5.395 18 C -0.056 4.056 19 C 0.011 3.989 20 C -0.083 4.083 21 C -0.102 4.102 22 C -0.117 4.117 23 C 0.023 3.977 24 N -0.330 5.330 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.272 0.728 33 H 0.204 0.796 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 10.670 -11.330 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.016 4.016 4 C -0.029 4.029 5 N -0.159 5.159 6 C -0.418 4.418 7 H 0.121 0.879 8 C -0.177 4.177 9 N -0.546 5.546 10 Si 0.750 3.250 11 H -0.180 1.180 12 H -0.217 1.217 13 H -0.196 1.196 14 C 0.340 3.660 15 O -0.511 6.511 16 C -0.187 4.187 17 N -0.110 5.110 18 C -0.218 4.218 19 C -0.101 4.101 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.137 4.137 23 C -0.100 4.100 24 N 0.001 4.999 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.221 0.779 34 H 0.202 0.798 35 H 0.205 0.795 36 H 0.206 0.794 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.574 10.404 -10.274 14.707 hybrid contribution 0.290 0.524 0.586 0.838 sum -1.283 10.929 -9.688 14.661 Atomic orbital electron populations 1.22870 0.80349 1.03196 1.00476 1.88163 1.20766 1.27536 1.95360 1.22809 0.92602 0.85231 1.00954 1.21989 0.94722 0.99004 0.87168 1.43395 1.56075 1.06986 1.09447 1.19295 1.36740 0.79199 1.06587 0.87939 1.25827 0.96624 0.95694 0.99533 1.69745 1.44236 1.06969 1.33621 0.86203 0.78934 0.78965 0.80859 1.18042 1.21682 1.19607 1.16583 0.80702 0.85258 0.83415 1.90608 1.61356 1.13415 1.85708 1.22138 1.20805 0.87103 0.88627 1.70640 1.10374 1.12513 1.17453 1.23490 1.10599 0.97815 0.89892 1.20594 1.07405 0.89918 0.92228 1.21072 0.99105 0.98910 0.91138 1.21713 0.97604 0.91358 1.01631 1.21485 0.99011 1.03508 0.89678 1.22339 1.04234 0.83031 1.00366 1.42724 1.40623 1.07478 1.09094 0.92158 0.94196 0.89521 0.89522 0.93968 0.91566 0.88340 0.91784 0.77914 0.79758 0.79513 0.79383 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.52 10.18 -148.98 -1.52 -19.04 16 3 C 0.06 2.44 6.28 71.98 0.45 2.89 16 4 C 0.09 4.29 4.43 86.38 0.38 4.68 16 5 N -0.44 -23.51 2.11 -640.64 -1.35 -24.86 16 6 C -0.29 -16.99 7.88 84.09 0.66 -16.33 16 7 H 0.10 6.66 6.07 -2.91 -0.02 6.64 16 8 C 0.02 1.45 5.44 84.93 0.46 1.91 16 9 N -0.91 -55.50 13.96 21.67 0.30 -55.20 16 10 Si 0.92 45.80 24.67 68.60 1.69 47.49 16 11 H -0.25 -11.66 6.86 99.48 0.68 -10.98 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.27 -13.48 6.88 99.48 0.68 -12.80 16 14 C 0.55 28.83 7.59 86.29 0.65 29.48 16 15 O -0.62 -31.81 14.90 -4.76 -0.07 -31.88 16 16 C 0.06 2.95 7.59 135.47 1.03 3.98 16 17 N -0.39 -19.90 7.80 -187.50 -1.46 -21.36 16 18 C -0.06 -2.18 12.00 84.96 1.02 -1.16 16 19 C 0.01 0.38 6.80 39.10 0.27 0.64 16 20 C -0.08 -1.75 10.11 22.35 0.23 -1.52 16 21 C -0.10 -1.63 10.08 22.34 0.23 -1.41 16 22 C -0.12 -2.30 9.98 22.07 0.22 -2.08 16 23 C 0.02 0.73 10.52 83.32 0.88 1.60 16 24 N -0.33 -13.12 2.96 -340.18 -1.01 -14.12 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 3.14 3.17 -2.39 -0.01 3.13 16 31 H 0.10 4.23 7.36 -2.39 -0.02 4.22 16 32 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 34 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.16 5.34 6.78 -2.91 -0.02 5.32 16 Total: -1.00 -81.07 311.75 5.36 -75.71 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.05 Total: 18.47 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 7.72 Total: 24.79 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.52 Total: -115.54 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.59 Total: -50.92 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.69 Total: 47.49 kcal Total: -81.07 5.36 -75.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601625373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.181 kcal (2) G-P(sol) polarization free energy of solvation -81.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds