Wall clock time and date at job start Tue Mar 31 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50696 * 110.43817 * 2 1 4 4 O 1.21281 * 119.99932 * 122.54337 * 3 2 1 5 5 N 1.34776 * 120.00186 * 302.54571 * 3 2 1 6 6 C 1.39472 * 120.00087 * 174.98928 * 5 3 2 7 7 C 1.38596 * 119.57930 * 174.23484 * 6 5 3 8 8 C 1.40806 * 118.79725 * 180.02562 * 7 6 5 9 9 C 1.41540 * 120.99709 * 179.97438 * 8 7 6 10 10 H 1.08008 * 120.00086 * 152.41601 * 9 8 7 11 11 C 1.40030 * 120.00230 * 332.41022 * 9 8 7 12 12 N 1.30749 * 119.99735 * 341.08902 * 11 9 8 13 13 Si 1.86803 * 120.00430 * 161.09025 * 11 9 8 14 14 H 1.48499 * 109.46769 * 59.99624 * 13 11 9 15 15 H 1.48488 * 109.47123 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46791 * 300.00414 * 13 11 9 17 17 C 1.41177 * 118.00651 * 0.02562 * 8 7 6 18 18 C 1.37587 * 119.01493 * 0.02562 * 17 8 7 19 19 N 1.32086 * 121.10907 * 359.97193 * 18 17 8 20 20 C 1.54628 * 110.48865 * 122.54514 * 2 1 3 21 21 C 1.54481 * 101.76513 * 143.60266 * 20 2 1 22 22 N 1.46767 * 105.47631 * 334.58976 * 21 20 2 23 23 C 1.34416 * 111.29680 * 17.01079 * 22 21 20 24 24 O 1.21283 * 124.93499 * 179.64270 * 23 22 21 25 25 H 1.09001 * 109.47424 * 59.29525 * 1 2 3 26 26 H 1.09002 * 109.47579 * 179.29729 * 1 2 3 27 27 H 1.09006 * 109.46879 * 299.29817 * 1 2 3 28 28 H 0.96999 * 119.99909 * 354.99451 * 5 3 2 29 29 H 1.08009 * 120.60384 * 0.02842 * 7 6 5 30 30 H 0.97000 * 119.99492 * 179.97438 * 12 11 9 31 31 H 1.08000 * 120.49363 * 179.97438 * 17 8 7 32 32 H 1.08003 * 119.44644 * 179.97438 * 18 17 8 33 33 H 1.09001 * 110.96907 * 261.72466 * 20 2 1 34 34 H 1.09002 * 110.96888 * 25.45302 * 20 2 1 35 35 H 1.09007 * 110.24035 * 93.58573 * 21 20 2 36 36 H 1.08992 * 110.25007 * 215.57979 * 21 20 2 37 37 H 0.96995 * 124.34431 * 197.01436 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.7974 1.7830 0.8854 5 7 1.7031 2.2629 -0.9839 6 6 2.1043 3.5975 -0.9291 7 6 1.8403 4.4358 -2.0007 8 6 2.2531 5.7801 -1.9281 9 6 2.0080 6.6765 -2.9956 10 1 1.9039 7.7336 -2.8000 11 6 1.9006 6.1930 -4.3054 12 7 2.3786 5.0143 -4.6083 13 14 1.0745 7.2318 -5.6199 14 1 1.8073 8.5146 -5.7699 15 1 1.0885 6.4990 -6.9112 16 1 -0.3297 7.5075 -5.2229 17 6 2.9197 6.2066 -0.7590 18 6 3.1379 5.3004 0.2531 19 7 2.7345 4.0472 0.1458 20 6 2.0712 -0.7792 1.2210 21 6 3.3217 -1.4652 0.6278 22 7 3.0600 -1.5793 -0.8119 23 6 2.0622 -0.7633 -1.1928 24 8 1.6481 -0.6554 -2.3277 25 1 -0.3634 0.5247 -0.8836 26 1 -0.3634 -1.0276 -0.0126 27 1 -0.3633 0.5029 0.8963 28 1 1.1700 1.9469 -1.7301 29 1 1.3272 4.0648 -2.8757 30 1 2.3039 4.6792 -5.5155 31 1 3.2541 7.2288 -0.6608 32 1 3.6476 5.6191 1.1504 33 1 2.3449 -0.0992 2.0277 34 1 1.3468 -1.5176 1.5649 35 1 4.2065 -0.8530 0.8030 36 1 3.4535 -2.4541 1.0668 37 1 3.5449 -2.1679 -1.4112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602121461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:02 Heat of formation + Delta-G solvation = -58.129122 kcal Electronic energy + Delta-G solvation = -22923.697162 eV Core-core repulsion = 19471.791669 eV Total energy + Delta-G solvation = -3451.905493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38059 -40.72781 -39.37399 -37.49169 -36.14519 -35.57075 -34.19342 -32.51664 -30.59592 -29.58199 -27.93369 -26.60110 -24.57588 -23.88543 -22.79250 -22.26700 -20.53139 -19.50291 -18.80470 -18.38486 -17.64001 -17.06003 -16.57145 -16.46945 -16.14306 -15.70740 -15.61050 -15.23867 -15.00779 -14.71731 -14.58537 -14.36454 -14.19805 -13.60175 -13.40194 -13.25398 -13.24501 -12.98317 -12.64719 -12.34264 -12.17744 -12.12245 -11.98429 -11.53066 -11.22261 -11.14502 -10.88832 -10.18596 -9.98311 -9.68161 -8.92747 -8.71622 -6.59271 0.62743 0.96222 1.19837 1.38424 1.49814 1.52952 1.72394 2.05149 2.17831 2.33572 2.76097 3.13805 3.30465 3.48337 3.68923 3.82413 4.06503 4.17842 4.37785 4.62923 4.67366 4.71109 4.75004 4.76306 4.88255 4.98200 5.00625 5.08593 5.12153 5.16200 5.43408 5.57587 5.66961 5.84564 5.87507 6.04908 6.37414 6.50847 6.75393 6.79076 7.06665 7.12393 7.73612 8.23409 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.004648 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.641780 B = 6023.236519 C = 6836.811116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C 0.518 3.482 4 O -0.503 6.503 5 N -0.651 5.651 6 C 0.334 3.666 7 C -0.261 4.261 8 C 0.120 3.880 9 C -0.491 4.491 10 H 0.089 0.911 11 C 0.041 3.959 12 N -0.816 5.816 13 Si 0.987 3.013 14 H -0.255 1.255 15 H -0.269 1.269 16 H -0.258 1.258 17 C -0.295 4.295 18 C 0.116 3.884 19 N -0.573 5.573 20 C -0.110 4.110 21 C 0.098 3.902 22 N -0.715 5.715 23 C 0.523 3.477 24 O -0.559 6.559 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.417 0.583 29 H 0.108 0.892 30 H 0.291 0.709 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 -13.400 6.895 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 C 0.303 3.697 4 O -0.374 6.374 5 N -0.297 5.297 6 C 0.109 3.891 7 C -0.287 4.287 8 C 0.112 3.888 9 C -0.521 4.521 10 H 0.107 0.893 11 C -0.177 4.177 12 N -0.441 5.441 13 Si 0.806 3.194 14 H -0.179 1.179 15 H -0.193 1.193 16 H -0.182 1.182 17 C -0.319 4.319 18 C -0.037 4.037 19 N -0.293 5.293 20 C -0.148 4.148 21 C -0.026 4.026 22 N -0.370 5.370 23 C 0.307 3.693 24 O -0.437 6.437 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.254 0.746 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.174 0.826 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.147 0.853 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.215 -13.857 7.584 15.951 hybrid contribution -0.206 0.839 -2.204 2.367 sum -2.421 -13.018 5.380 14.292 Atomic orbital electron populations 1.21731 0.88113 1.05069 1.03558 1.21740 1.00862 0.91215 0.98423 1.20558 0.80764 0.86935 0.81449 1.90732 1.33648 1.77313 1.35752 1.43526 1.53510 1.07043 1.25604 1.18370 0.94846 0.84543 0.91361 1.21381 1.12503 0.96103 0.98719 1.17965 0.86483 0.91856 0.92475 1.19841 1.45020 0.95670 0.91560 0.89320 1.26867 0.92483 0.96341 1.01981 1.69848 1.32253 1.19404 1.22631 0.85186 0.79589 0.78769 0.75826 1.17930 1.19340 1.18166 1.22121 1.10343 1.01174 0.98251 1.22295 0.95765 0.87824 0.97835 1.67311 1.19816 1.17286 1.24898 1.22807 0.97629 0.99370 0.94974 1.22363 0.98083 1.03729 0.78392 1.46160 1.35652 1.42836 1.12331 1.20586 0.80345 0.79926 0.88447 1.90755 1.62894 1.67490 1.22595 0.92516 0.88259 0.89845 0.74614 0.87387 0.89780 0.86251 0.82573 0.88257 0.85337 0.91666 0.85309 0.73752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.30 71.98 0.60 -2.19 16 2 C -0.12 -3.08 0.75 -52.94 -0.04 -3.12 16 3 C 0.52 19.82 6.50 87.66 0.57 20.39 16 4 O -0.50 -22.06 13.77 -3.03 -0.04 -22.10 16 5 N -0.65 -28.09 5.23 -308.66 -1.61 -29.71 16 6 C 0.33 17.14 7.40 132.75 0.98 18.12 16 7 C -0.26 -14.21 8.60 22.98 0.20 -14.01 16 8 C 0.12 6.61 5.55 -21.12 -0.12 6.49 16 9 C -0.49 -26.06 9.09 23.52 0.21 -25.84 16 10 H 0.09 4.44 7.92 -2.91 -0.02 4.42 16 11 C 0.04 2.03 5.12 85.29 0.44 2.46 16 12 N -0.82 -42.85 11.31 21.84 0.25 -42.60 16 13 Si 0.99 37.29 29.60 68.60 2.03 39.32 16 14 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 15 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 17 C -0.30 -14.79 9.90 22.84 0.23 -14.56 16 18 C 0.12 5.60 11.15 84.50 0.94 6.54 16 19 N -0.57 -29.63 7.89 -193.53 -1.53 -31.15 16 20 C -0.11 -1.99 6.02 31.65 0.19 -1.80 16 21 C 0.10 1.55 7.78 86.83 0.68 2.23 16 22 N -0.71 -14.88 6.24 -459.80 -2.87 -17.75 16 23 C 0.52 15.10 7.15 87.90 0.63 15.73 16 24 O -0.56 -20.37 17.84 -3.04 -0.05 -20.43 16 25 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.42 16.85 8.14 -92.71 -0.75 16.10 16 29 H 0.11 5.99 6.56 -2.91 -0.02 5.97 16 30 H 0.29 13.90 8.29 -92.71 -0.77 13.13 16 31 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 32 H 0.16 6.30 8.06 -2.91 -0.02 6.28 16 33 H 0.10 2.11 6.96 -2.39 -0.02 2.09 16 34 H 0.13 1.33 7.91 -2.39 -0.02 1.32 16 35 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.42 7.11 8.96 -92.71 -0.83 6.28 16 Total: -1.00 -73.75 317.55 1.22 -72.53 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.45 Total: 41.44 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 5.51 Total: 10.46 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -5.76 Total: -121.22 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.10 Total: -42.53 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -73.75 1.22 -72.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602121461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.398 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds