Wall clock time and date at job start Tue Mar 31 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 110.43432 * 2 1 4 4 O 1.21279 * 119.99791 * 237.45740 * 3 2 1 5 5 N 1.34778 * 120.00407 * 57.46317 * 3 2 1 6 6 C 1.39468 * 120.00133 * 175.10178 * 5 3 2 7 7 C 1.38600 * 119.57562 * 185.24462 * 6 5 3 8 8 C 1.40810 * 118.79086 * 179.97438 * 7 6 5 9 9 C 1.41543 * 120.99193 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00381 * 337.46260 * 9 8 7 11 11 C 1.40040 * 119.99900 * 157.46368 * 9 8 7 12 12 N 1.30734 * 119.99661 * 341.99671 * 11 9 8 13 13 Si 1.86797 * 119.99880 * 161.99611 * 11 9 8 14 14 H 1.48502 * 109.47256 * 94.75027 * 13 11 9 15 15 H 1.48501 * 109.47081 * 214.74971 * 13 11 9 16 16 H 1.48502 * 109.47110 * 334.74635 * 13 11 9 17 17 C 1.41166 * 118.01216 * 359.97438 * 8 7 6 18 18 C 1.37592 * 119.01436 * 0.02562 * 17 8 7 19 19 N 1.32089 * 121.10771 * 359.71869 * 18 17 8 20 20 C 1.54625 * 110.48426 * 237.45630 * 2 1 3 21 21 C 1.54479 * 101.76669 * 216.39153 * 20 2 1 22 22 N 1.46766 * 105.54818 * 25.37626 * 21 20 2 23 23 C 1.34564 * 111.21269 * 343.08955 * 22 21 20 24 24 O 1.21285 * 124.91312 * 180.34673 * 23 22 21 25 25 H 1.09003 * 109.47157 * 182.54258 * 1 2 3 26 26 H 1.09001 * 109.46822 * 302.54383 * 1 2 3 27 27 H 1.08994 * 109.47169 * 62.53902 * 1 2 3 28 28 H 0.96999 * 119.99700 * 355.09426 * 5 3 2 29 29 H 1.08001 * 120.60338 * 359.97438 * 7 6 5 30 30 H 0.97001 * 120.00136 * 180.02562 * 12 11 9 31 31 H 1.08003 * 120.49483 * 179.97438 * 17 8 7 32 32 H 1.08003 * 119.44707 * 180.02562 * 18 17 8 33 33 H 1.09007 * 110.96554 * 98.27337 * 20 2 1 34 34 H 1.09000 * 110.97633 * 334.51295 * 20 2 1 35 35 H 1.08998 * 110.24803 * 144.41563 * 21 20 2 36 36 H 1.09003 * 110.24573 * 266.33377 * 21 20 2 37 37 H 0.96992 * 124.34833 * 163.02931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4121 0.0000 4 8 2.7973 1.7831 -0.8854 5 7 1.7032 2.2628 0.9840 6 6 2.2692 3.5362 1.0412 7 6 1.9841 4.3639 2.1158 8 6 2.5649 5.6459 2.1572 9 6 2.3061 6.5290 3.2327 10 1 1.4152 6.4054 3.8305 11 6 3.2053 7.5629 3.5216 12 7 4.4262 7.5164 3.0564 13 14 2.6603 9.0085 4.5717 14 1 3.0328 8.7600 5.9876 15 1 3.3272 10.2464 4.0943 16 1 1.1875 9.1682 4.4680 17 6 3.4138 6.0238 1.0945 18 6 3.6375 5.1330 0.0699 19 7 3.0771 3.9369 0.0710 20 6 2.0711 -0.7792 -1.2210 21 6 3.3218 -1.4651 -0.6280 22 7 3.0623 -1.5793 0.8120 23 6 2.0622 -0.7633 1.1927 24 8 1.6486 -0.6551 2.3277 25 1 -0.3634 -1.0267 0.0456 26 1 -0.3633 0.5528 0.8663 27 1 -0.3633 0.4739 -0.9118 28 1 1.0554 1.9895 1.6522 29 1 1.3284 4.0315 2.9070 30 1 5.0492 8.2324 3.2568 31 1 3.8802 6.9979 1.0853 32 1 4.2861 5.4147 -0.7464 33 1 2.3448 -0.0990 -2.0277 34 1 1.3470 -1.5180 -1.5646 35 1 3.4535 -2.4541 -1.0670 36 1 4.2067 -0.8537 -0.8045 37 1 3.5484 -2.1675 1.4108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602121462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:04 Heat of formation + Delta-G solvation = -57.103344 kcal Electronic energy + Delta-G solvation = -22716.706065 eV Core-core repulsion = 19264.845053 eV Total energy + Delta-G solvation = -3451.861012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.36680 -40.71673 -39.37393 -37.48209 -36.28715 -35.43685 -34.14797 -32.64980 -30.53037 -29.55602 -27.96281 -26.58526 -24.64453 -23.70341 -22.84109 -22.35409 -20.39153 -19.74229 -18.67139 -18.38284 -17.75280 -16.90991 -16.62844 -16.48878 -16.07992 -15.70766 -15.65426 -15.22209 -15.01575 -14.70586 -14.62962 -14.28515 -14.16813 -13.59631 -13.38385 -13.23124 -13.22366 -12.96084 -12.81846 -12.31679 -12.16750 -12.08615 -11.91946 -11.50420 -11.22885 -11.16773 -10.86739 -10.17366 -10.04661 -9.66393 -8.92937 -8.70931 -6.60810 0.65498 0.91629 1.19857 1.39139 1.50218 1.56190 1.75946 2.04096 2.18494 2.33710 2.75370 3.14750 3.30931 3.49743 3.70700 3.82659 4.07182 4.15810 4.38098 4.64839 4.67467 4.71665 4.74996 4.78729 4.87442 4.97646 5.00603 5.10390 5.13252 5.19553 5.44738 5.57455 5.67261 5.87873 5.89536 6.03415 6.35374 6.54288 6.74612 6.77370 7.07544 7.13716 7.75727 8.21160 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.003818 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.952244 B = 7331.125101 C = 7660.438553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.115 4.115 3 C 0.516 3.484 4 O -0.502 6.502 5 N -0.649 5.649 6 C 0.347 3.653 7 C -0.320 4.320 8 C 0.118 3.882 9 C -0.483 4.483 10 H 0.086 0.914 11 C 0.039 3.961 12 N -0.809 5.809 13 Si 0.990 3.010 14 H -0.261 1.261 15 H -0.263 1.263 16 H -0.256 1.256 17 C -0.246 4.246 18 C 0.100 3.900 19 N -0.575 5.575 20 C -0.111 4.111 21 C 0.097 3.903 22 N -0.717 5.717 23 C 0.524 3.476 24 O -0.557 6.557 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.420 0.580 29 H 0.114 0.886 30 H 0.294 0.706 31 H 0.120 0.880 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -14.611 -5.810 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 C 0.301 3.699 4 O -0.373 6.373 5 N -0.296 5.296 6 C 0.119 3.881 7 C -0.346 4.346 8 C 0.110 3.890 9 C -0.513 4.513 10 H 0.104 0.896 11 C -0.179 4.179 12 N -0.434 5.434 13 Si 0.810 3.190 14 H -0.186 1.186 15 H -0.187 1.187 16 H -0.179 1.179 17 C -0.270 4.270 18 C -0.051 4.051 19 N -0.295 5.295 20 C -0.149 4.149 21 C -0.026 4.026 22 N -0.372 5.372 23 C 0.308 3.692 24 O -0.436 6.436 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.258 0.742 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.162 0.838 33 H 0.116 0.884 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.081 0.919 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.900 -14.772 -6.688 16.678 hybrid contribution -0.036 1.076 1.903 2.187 sum -3.936 -13.695 -4.785 15.032 Atomic orbital electron populations 1.21752 0.87852 1.05140 1.03819 1.21732 1.01048 0.91119 0.98282 1.20583 0.80995 0.86921 0.81387 1.90755 1.34231 1.77311 1.35037 1.43486 1.44012 1.11733 1.30332 1.18264 0.92941 0.85426 0.91461 1.21363 1.15156 0.96434 1.01656 1.17967 0.88544 0.90396 0.92072 1.19912 1.07589 1.11062 1.12753 0.89627 1.26913 0.93414 1.01025 0.96538 1.69825 1.04734 1.32216 1.36627 0.85073 0.79940 0.76012 0.77997 1.18576 1.18694 1.17945 1.22179 1.07025 1.01648 0.96110 1.22230 0.96753 0.88839 0.97259 1.67321 1.15648 1.18777 1.27782 1.22805 0.97580 0.99405 0.95067 1.22345 0.98131 1.03664 0.78509 1.46199 1.35664 1.43043 1.12254 1.20604 0.80256 0.79829 0.88461 1.90744 1.62881 1.67430 1.22499 0.88412 0.92102 0.89622 0.74218 0.86839 0.89462 0.86244 0.83759 0.88355 0.85289 0.85439 0.91871 0.73766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.32 71.98 0.60 -1.90 16 2 C -0.11 -2.88 0.76 -52.94 -0.04 -2.92 16 3 C 0.52 18.94 6.51 87.66 0.57 19.52 16 4 O -0.50 -21.73 13.73 -3.03 -0.04 -21.77 16 5 N -0.65 -26.22 5.29 -308.67 -1.63 -27.85 16 6 C 0.35 17.27 7.42 132.76 0.98 18.25 16 7 C -0.32 -16.50 9.73 22.99 0.22 -16.27 16 8 C 0.12 6.54 5.61 -21.12 -0.12 6.42 16 9 C -0.48 -25.69 9.12 23.52 0.21 -25.48 16 10 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 11 C 0.04 1.92 5.19 85.29 0.44 2.36 16 12 N -0.81 -41.26 10.90 21.84 0.24 -41.02 16 13 Si 0.99 36.65 29.60 68.60 2.03 38.68 16 14 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 15 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 16 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 17 C -0.25 -13.35 8.80 22.84 0.20 -13.15 16 18 C 0.10 5.15 11.15 84.50 0.94 6.09 16 19 N -0.57 -30.21 7.85 -193.53 -1.52 -31.73 16 20 C -0.11 -1.91 6.02 31.65 0.19 -1.72 16 21 C 0.10 1.51 7.77 86.83 0.68 2.18 16 22 N -0.72 -14.40 6.25 -459.60 -2.87 -17.27 16 23 C 0.52 14.39 7.16 87.87 0.63 15.02 16 24 O -0.56 -19.20 17.87 -3.05 -0.05 -19.25 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.32 7.34 -2.39 -0.02 1.31 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.42 14.95 7.86 -92.71 -0.73 14.22 16 29 H 0.11 5.38 8.06 -2.91 -0.02 5.36 16 30 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 31 H 0.12 6.54 6.15 -2.91 -0.02 6.52 16 32 H 0.15 6.57 8.06 -2.91 -0.02 6.54 16 33 H 0.10 2.03 6.96 -2.38 -0.02 2.02 16 34 H 0.13 1.23 7.91 -2.39 -0.02 1.21 16 35 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.42 6.84 8.96 -92.71 -0.83 6.01 16 Total: -1.00 -73.70 316.44 1.23 -72.47 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -0.43 Total: 39.35 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.51 Total: 8.39 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -5.79 Total: -117.87 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.10 Total: -41.02 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -73.70 1.23 -72.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602121462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.366 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds