Wall clock time and date at job start Tue Mar 31 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47303 * 2 1 4 4 C 1.46505 * 119.99648 * 269.99753 * 3 2 1 5 5 C 1.50694 * 109.47119 * 270.00005 * 4 3 2 6 6 H 1.08004 * 120.00103 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99773 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99710 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47310 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47099 * 119.99764 * 9 7 5 12 12 H 1.48499 * 109.46786 * 239.99414 * 9 7 5 13 13 C 1.34774 * 119.99971 * 89.99863 * 3 2 1 14 14 O 1.21284 * 119.99704 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00202 * 0.02562 * 13 3 2 16 16 N 1.46502 * 109.47292 * 180.02562 * 15 13 3 17 17 C 1.35780 * 119.41730 * 89.99477 * 16 15 13 18 18 C 1.35139 * 120.99834 * 179.72419 * 17 16 15 19 19 C 1.41337 * 119.81915 * 0.28019 * 18 17 16 20 20 C 1.43199 * 120.55670 * 180.02562 * 19 18 17 21 21 N 9.58340 * 101.30700 * 54.40793 * 2 1 3 22 22 C 1.38574 * 118.87605 * 359.97438 * 19 18 17 23 23 C 1.34589 * 119.41301 * 270.28335 * 16 15 13 24 24 O 1.22046 * 119.93696 * 359.97438 * 23 16 15 25 25 H 1.08996 * 109.46899 * 300.00347 * 1 2 3 26 26 H 1.09006 * 109.46752 * 60.00188 * 1 2 3 27 27 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46895 * 239.99494 * 2 1 3 29 29 H 1.09005 * 109.46943 * 120.00328 * 2 1 3 30 30 H 1.08996 * 109.46826 * 30.00299 * 4 3 2 31 31 H 1.08998 * 109.46604 * 149.99818 * 4 3 2 32 32 H 0.96994 * 120.00441 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47628 * 59.99599 * 15 13 3 34 34 H 1.09007 * 109.47292 * 299.99695 * 15 13 3 35 35 H 1.08002 * 119.50372 * 0.02562 * 17 16 15 36 36 H 1.07998 * 120.09156 * 180.30196 * 18 17 16 37 37 H 1.08003 * 120.48767 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3496 3.1263 -3.6177 9 14 5.9135 2.0960 -3.4171 10 1 6.6009 1.2401 -2.4170 11 1 5.9205 1.4178 -4.7381 12 1 6.6216 3.3969 -3.5248 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9924 1.3060 2.4722 16 7 2.3090 2.2038 3.5858 17 6 1.3378 3.0060 4.0926 18 6 1.5932 3.8423 5.1229 19 6 2.8901 3.8922 5.6827 20 6 3.1780 4.7721 6.7752 21 7 3.4090 5.4694 7.6418 22 6 3.8777 3.0746 5.1572 23 6 3.5590 2.2231 4.0844 24 8 4.4159 1.4959 3.6085 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0957 3.1409 -1.1385 32 1 3.6756 3.5167 -4.4436 33 1 2.6228 0.4187 2.5299 34 1 0.9445 1.0115 2.5302 35 1 0.3449 2.9718 3.6690 36 1 0.8085 4.4704 5.5178 37 1 4.8778 3.0920 5.5647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603346641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:55 Heat of formation + Delta-G solvation = 3.627155 kcal Electronic energy + Delta-G solvation = -22438.452150 eV Core-core repulsion = 18989.224610 eV Total energy + Delta-G solvation = -3449.227540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.59321 -39.05795 -37.53589 -36.65679 -35.49458 -34.46981 -32.83939 -30.31898 -30.22304 -29.16290 -26.89036 -24.91506 -23.66964 -23.13599 -22.51533 -19.11099 -18.93071 -17.77257 -17.45065 -16.91166 -16.44006 -15.75079 -15.41528 -15.17138 -14.68579 -14.40466 -14.23822 -13.95468 -13.80243 -13.56516 -13.45847 -13.19365 -12.90838 -12.67584 -12.16945 -12.12021 -12.01027 -11.91160 -11.65527 -11.27129 -10.96524 -10.82079 -10.61453 -10.41800 -10.17182 -10.14004 -9.66754 -9.13734 -8.46874 -8.12952 -7.82460 -6.08182 -4.12567 0.16451 1.51456 2.28470 2.41358 2.77322 3.12072 3.29581 3.37901 3.43397 3.43956 3.54930 3.82168 4.36297 4.43461 4.50432 4.77777 4.79292 4.88947 5.04376 5.13916 5.27121 5.31232 5.45047 5.47188 5.60734 5.68348 5.84198 5.88489 6.11284 6.18200 6.34317 6.89407 6.92146 7.10732 7.32779 7.41884 7.87780 7.89679 8.17580 8.22248 8.76295 8.94859 9.53065 11.00016 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.004314 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.950937 B = 6489.058699 C = 7311.134248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.493 3.507 14 O -0.528 6.528 15 C 0.065 3.935 16 N -0.472 5.472 17 C 0.164 3.836 18 C -0.216 4.216 19 C 0.078 3.922 20 C 0.255 3.745 21 N -0.401 5.401 22 C -0.175 4.175 23 C 0.522 3.478 24 O -0.529 6.529 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.170 0.830 36 H 0.153 0.847 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 -5.643 14.800 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.278 3.722 14 O -0.404 6.404 15 C -0.060 4.060 16 N -0.181 5.181 17 C 0.036 3.964 18 C -0.240 4.240 19 C 0.071 3.929 20 C -0.061 4.061 21 N -0.076 5.076 22 C -0.201 4.201 23 C 0.322 3.678 24 O -0.409 6.409 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.187 0.813 36 H 0.171 0.829 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.815 -4.364 15.587 18.431 hybrid contribution 0.813 -0.304 -0.849 1.214 sum -8.002 -4.669 14.738 17.408 Atomic orbital electron populations 1.22234 0.96500 1.01702 1.02322 1.21516 0.93602 0.84008 1.03219 1.48245 1.63216 1.13282 1.07450 1.19319 0.96528 0.93568 0.77692 1.21475 0.96850 1.31985 1.06312 0.92266 1.24920 0.97918 0.94818 0.96353 1.69929 1.35649 1.33477 1.14359 0.86446 0.84589 0.78171 0.78304 1.19658 1.20931 1.20853 1.20239 0.79614 0.87330 0.85054 1.90734 1.45163 1.17817 1.86710 1.22107 1.04274 0.94372 0.85273 1.45165 1.10669 1.33768 1.28526 1.21808 0.94039 0.88515 0.92066 1.20345 0.96406 1.05752 1.01515 1.16342 0.94656 0.91997 0.89917 1.25568 0.93701 0.93595 0.93226 1.81260 1.07422 1.08796 1.10156 1.22608 1.00782 0.98650 0.98050 1.16768 0.81203 0.85217 0.84616 1.91032 1.45075 1.42941 1.61807 0.93223 0.91801 0.91863 0.89432 0.91630 0.94737 0.93854 0.92748 0.85458 0.86409 0.81283 0.82912 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.10 1.39 5.93 -4.04 -0.02 1.37 16 3 N -0.59 -11.37 2.46 -175.06 -0.43 -11.80 16 4 C 0.25 6.16 5.16 -5.19 -0.03 6.13 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.49 9.29 7.73 -10.99 -0.09 9.21 16 14 O -0.53 -12.50 16.01 5.55 0.09 -12.41 16 15 C 0.06 0.82 4.34 -5.20 -0.02 0.79 16 16 N -0.47 -5.92 2.07 -121.11 -0.25 -6.17 16 17 C 0.16 1.43 10.25 -16.91 -0.17 1.25 16 18 C -0.22 -1.74 9.75 -39.51 -0.39 -2.12 16 19 C 0.08 0.78 5.75 -106.67 -0.61 0.16 16 20 C 0.26 2.75 15.37 -22.47 -0.35 2.41 16 21 N -0.40 -5.10 18.54 41.84 0.78 -4.33 16 22 C -0.17 -2.10 9.77 -38.56 -0.38 -2.47 16 23 C 0.52 7.86 7.40 -15.44 -0.11 7.74 16 24 O -0.53 -10.16 16.62 4.88 0.08 -10.08 16 25 H 0.05 0.44 7.22 -51.93 -0.38 0.07 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.13 1.60 6.64 -51.93 -0.34 1.26 16 34 H 0.12 0.90 7.04 -51.93 -0.37 0.54 16 35 H 0.17 0.84 8.02 -52.49 -0.42 0.42 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -37.07 333.83 -5.50 -42.57 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.30 Total: -3.95 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.21 Total: 9.63 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.83 Total: -47.78 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.17 Total: -22.49 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.07 -5.50 -42.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603346641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.195 kcal (2) G-P(sol) polarization free energy of solvation -37.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds