Wall clock time and date at job start Tue Mar 31 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47303 * 2 1 4 4 C 1.46505 * 119.99648 * 269.99753 * 3 2 1 5 5 C 1.50694 * 109.47119 * 270.00005 * 4 3 2 6 6 H 1.08004 * 120.00103 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99773 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99710 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47310 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47099 * 119.99764 * 9 7 5 12 12 H 1.48499 * 109.46786 * 239.99414 * 9 7 5 13 13 C 1.34774 * 119.99971 * 89.99863 * 3 2 1 14 14 O 1.21284 * 119.99704 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00202 * 0.02562 * 13 3 2 16 16 N 1.46502 * 109.47292 * 180.02562 * 15 13 3 17 17 C 1.35780 * 119.41730 * 89.99477 * 16 15 13 18 18 C 1.35139 * 120.99834 * 179.72419 * 17 16 15 19 19 C 1.41337 * 119.81915 * 0.28019 * 18 17 16 20 20 C 1.43199 * 120.55670 * 180.02562 * 19 18 17 21 21 N 9.58340 * 101.30700 * 54.40793 * 2 1 3 22 22 C 1.38574 * 118.87605 * 359.97438 * 19 18 17 23 23 C 1.34589 * 119.41301 * 270.28335 * 16 15 13 24 24 O 1.22046 * 119.93696 * 359.97438 * 23 16 15 25 25 H 1.08996 * 109.46899 * 300.00347 * 1 2 3 26 26 H 1.09006 * 109.46752 * 60.00188 * 1 2 3 27 27 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46895 * 239.99494 * 2 1 3 29 29 H 1.09005 * 109.46943 * 120.00328 * 2 1 3 30 30 H 1.08996 * 109.46826 * 30.00299 * 4 3 2 31 31 H 1.08998 * 109.46604 * 149.99818 * 4 3 2 32 32 H 0.96994 * 120.00441 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47628 * 59.99599 * 15 13 3 34 34 H 1.09007 * 109.47292 * 299.99695 * 15 13 3 35 35 H 1.08002 * 119.50372 * 0.02562 * 17 16 15 36 36 H 1.07998 * 120.09156 * 180.30196 * 18 17 16 37 37 H 1.08003 * 120.48767 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3496 3.1263 -3.6177 9 14 5.9135 2.0960 -3.4171 10 1 6.6009 1.2401 -2.4170 11 1 5.9205 1.4178 -4.7381 12 1 6.6216 3.3969 -3.5248 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9924 1.3060 2.4722 16 7 2.3090 2.2038 3.5858 17 6 1.3378 3.0060 4.0926 18 6 1.5932 3.8423 5.1229 19 6 2.8901 3.8922 5.6827 20 6 3.1780 4.7721 6.7752 21 7 3.4090 5.4694 7.6418 22 6 3.8777 3.0746 5.1572 23 6 3.5590 2.2231 4.0844 24 8 4.4159 1.4959 3.6085 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0957 3.1409 -1.1385 32 1 3.6756 3.5167 -4.4436 33 1 2.6228 0.4187 2.5299 34 1 0.9445 1.0115 2.5302 35 1 0.3449 2.9718 3.6690 36 1 0.8085 4.4704 5.5178 37 1 4.8778 3.0920 5.5647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603346641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:54 Heat of formation + Delta-G solvation = -21.751728 kcal Electronic energy + Delta-G solvation = -22439.552661 eV Core-core repulsion = 18989.224610 eV Total energy + Delta-G solvation = -3450.328051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59161 -40.49086 -38.54085 -37.69510 -36.97915 -35.48863 -34.86931 -31.65376 -31.14821 -30.37016 -28.56166 -26.05553 -24.86412 -24.39393 -23.88977 -20.32352 -20.01297 -18.77168 -18.62331 -18.47736 -18.11170 -17.01190 -16.62780 -16.44188 -16.28137 -15.78244 -15.22467 -14.93878 -14.83096 -14.70205 -14.55828 -14.41089 -14.29025 -13.79733 -13.56350 -13.31971 -13.18106 -13.03844 -12.97436 -12.80767 -12.67865 -12.49012 -12.16418 -11.83126 -11.70435 -11.41837 -11.27639 -10.65964 -10.57345 -9.47175 -9.05148 -8.24986 -6.38298 -0.72910 0.71519 1.32850 1.35060 1.36362 1.46640 1.49185 1.70962 1.83475 2.30440 2.41834 2.53639 2.74384 3.04971 3.54490 3.65379 3.73039 4.01535 4.04943 4.14281 4.23859 4.36021 4.47927 4.62169 4.69809 4.88539 5.00042 5.05535 5.09101 5.11843 5.22667 5.43431 5.48646 5.56876 5.82975 5.97377 6.05692 6.21802 6.66167 6.75058 6.87525 7.25327 7.40575 8.81725 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.004314 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.950937 B = 6489.058699 C = 7311.134248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 N -0.596 5.596 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.045 0.955 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.265 1.265 12 H -0.282 1.282 13 C 0.484 3.516 14 O -0.588 6.588 15 C 0.078 3.922 16 N -0.473 5.473 17 C 0.163 3.837 18 C -0.202 4.202 19 C 0.098 3.902 20 C 0.277 3.723 21 N -0.430 5.430 22 C -0.203 4.203 23 C 0.507 3.493 24 O -0.591 6.591 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.028 0.972 31 H 0.000 1.000 32 H 0.267 0.733 33 H 0.129 0.871 34 H 0.182 0.818 35 H 0.218 0.782 36 H 0.193 0.807 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 -6.629 16.154 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 N -0.327 5.327 4 C 0.144 3.856 5 C -0.583 4.583 6 H 0.064 0.936 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.190 1.190 12 H -0.208 1.208 13 C 0.271 3.729 14 O -0.469 6.469 15 C -0.046 4.046 16 N -0.182 5.182 17 C 0.036 3.964 18 C -0.226 4.226 19 C 0.090 3.910 20 C -0.039 4.039 21 N -0.106 5.106 22 C -0.229 4.229 23 C 0.310 3.690 24 O -0.477 6.477 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.046 0.954 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.199 0.801 35 H 0.235 0.765 36 H 0.210 0.790 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.046 -5.379 16.970 20.950 hybrid contribution 1.392 0.058 -1.234 1.862 sum -9.653 -5.321 15.736 19.212 Atomic orbital electron populations 1.22170 0.93376 1.03829 1.02438 1.21880 0.96122 0.80898 1.04107 1.48239 1.63378 1.15188 1.05938 1.18692 0.94840 0.91717 0.80390 1.21751 0.98279 1.31841 1.06412 0.93633 1.25738 1.01902 0.94562 0.96508 1.70019 1.37393 1.34159 1.14806 0.85496 0.79665 0.77993 0.78457 1.19822 1.18982 1.20819 1.21324 0.77953 0.86864 0.86746 1.90697 1.47650 1.20699 1.87827 1.22166 1.07902 0.93100 0.81443 1.45245 1.10696 1.34181 1.28041 1.22687 0.94957 0.87071 0.91671 1.20865 0.96058 1.05131 1.00501 1.16427 0.95175 0.90477 0.88896 1.25521 0.92724 0.92927 0.92727 1.81294 1.08385 1.09816 1.11094 1.22451 1.01706 1.00044 0.98659 1.17150 0.81598 0.85136 0.85085 1.90984 1.46970 1.45680 1.64020 0.90567 0.94260 0.88643 0.91317 0.88086 0.95382 0.98148 0.92373 0.85282 0.80123 0.76519 0.79035 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.24 71.98 0.74 -2.12 16 2 C 0.09 2.38 5.93 86.38 0.51 2.89 16 3 N -0.60 -23.00 2.46 -826.15 -2.03 -25.03 16 4 C 0.27 13.73 5.16 85.63 0.44 14.17 16 5 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C 0.01 0.71 5.46 84.66 0.46 1.17 16 8 N -0.92 -55.44 13.29 21.45 0.28 -55.16 16 9 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 10 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 C 0.48 17.99 7.73 87.65 0.68 18.67 16 14 O -0.59 -28.54 16.01 -3.04 -0.05 -28.59 16 15 C 0.08 1.75 4.34 85.63 0.37 2.12 16 16 N -0.47 -10.82 2.07 -655.27 -1.36 -12.18 16 17 C 0.16 2.14 10.25 83.37 0.85 2.99 16 18 C -0.20 -2.43 9.75 22.32 0.22 -2.22 16 19 C 0.10 1.76 5.75 -21.19 -0.12 1.64 16 20 C 0.28 5.50 15.37 88.33 1.36 6.86 16 21 N -0.43 -10.40 18.54 19.00 0.35 -10.05 16 22 C -0.20 -4.86 9.77 22.93 0.22 -4.64 16 23 C 0.51 15.30 7.40 84.85 0.63 15.93 16 24 O -0.59 -23.68 16.62 -5.46 -0.09 -23.77 16 25 H 0.08 0.96 7.22 -2.39 -0.02 0.94 16 26 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 2.03 8.07 -2.38 -0.02 2.01 16 29 H 0.10 1.91 6.44 -2.38 -0.02 1.89 16 30 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 31 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.13 2.96 6.64 -2.39 -0.02 2.95 16 34 H 0.18 1.67 7.04 -2.38 -0.02 1.65 16 35 H 0.22 0.74 8.02 -2.91 -0.02 0.71 16 36 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -88.74 333.83 6.84 -81.90 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: 1.10 Total: -1.24 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 6.60 Total: 26.15 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -2.75 Total: -102.41 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.14 Total: -52.36 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -88.74 6.84 -81.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603346641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.149 kcal (2) G-P(sol) polarization free energy of solvation -88.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds