Wall clock time and date at job start Tue Mar 31 2020 02:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99501 * 2 1 4 4 H 1.48498 * 109.47088 * 269.99407 * 3 2 1 5 5 H 1.48497 * 109.47169 * 30.00265 * 3 2 1 6 6 H 1.48505 * 109.46750 * 150.00101 * 3 2 1 7 7 C 1.38946 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99614 * 0.02562 * 7 2 1 9 9 N 1.37093 * 120.00354 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00195 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00238 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00020 * 179.97438 * 10 9 7 13 13 H 1.09002 * 110.85716 * 59.29468 * 12 10 9 14 14 C 1.54625 * 110.97084 * 295.50392 * 12 10 9 15 15 C 1.51279 * 104.20111 * 217.04857 * 14 12 10 16 16 O 1.21275 * 124.94694 * 196.28808 * 15 14 12 17 17 N 1.34425 * 110.11126 * 16.25349 * 15 14 12 18 18 C 1.46502 * 124.34568 * 180.41611 * 17 15 14 19 19 C 1.50703 * 109.46976 * 89.97403 * 18 17 15 20 20 C 1.38230 * 119.61765 * 94.99919 * 19 18 17 21 21 C 1.38624 * 119.15842 * 179.97438 * 20 19 18 22 22 C 1.38674 * 118.42391 * 359.97438 * 21 20 19 23 23 C 1.38179 * 119.16062 * 359.97438 * 22 21 20 24 24 N 1.31853 * 119.61480 * 274.71920 * 19 18 17 25 25 C 1.46860 * 111.31157 * 0.40890 * 17 15 14 26 26 H 0.97000 * 120.00178 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99788 * 359.97438 * 9 7 2 28 28 H 1.09004 * 110.48744 * 335.72938 * 14 12 10 29 29 H 1.09001 * 110.48768 * 98.36250 * 14 12 10 30 30 H 1.09002 * 109.46644 * 209.96780 * 18 17 15 31 31 H 1.08995 * 109.47026 * 329.96914 * 18 17 15 32 32 H 1.07998 * 120.42303 * 359.97438 * 20 19 18 33 33 H 1.08004 * 120.78713 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.42063 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.61699 * 180.02562 * 23 22 21 36 36 H 1.08999 * 110.28448 * 223.98984 * 25 17 15 37 37 H 1.09000 * 110.25573 * 101.96196 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0011 13 1 5.9489 -1.8502 0.8769 14 6 6.1142 -1.7486 -1.3021 15 6 7.3400 -2.5772 -1.6172 16 8 8.2163 -2.2547 -2.3910 17 7 7.3169 -3.7226 -0.9140 18 6 8.3585 -4.7511 -0.9751 19 6 9.4090 -4.4647 0.0667 20 6 9.3322 -5.0808 1.3017 21 6 10.3039 -4.8108 2.2528 22 6 11.3215 -3.9277 1.9246 23 6 11.3333 -3.3506 0.6691 24 7 10.3938 -3.6335 -0.2123 25 6 6.1137 -3.8107 -0.0766 26 1 -0.4850 0.8400 -0.0004 27 1 3.8648 -0.3631 0.0007 28 1 5.3815 -1.8306 -2.1050 29 1 6.3893 -0.7063 -1.1407 30 1 7.9153 -5.7286 -0.7850 31 1 8.8165 -4.7460 -1.9641 32 1 8.5254 -5.7638 1.5229 33 1 10.2698 -5.2779 3.2260 34 1 12.0950 -3.6939 2.6411 35 1 12.1225 -2.6622 0.4055 36 1 6.3722 -4.1697 0.9196 37 1 5.3803 -4.4719 -0.5380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604544362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:00 Heat of formation + Delta-G solvation = -25.485165 kcal Electronic energy + Delta-G solvation = -22304.288081 eV Core-core repulsion = 18853.798136 eV Total energy + Delta-G solvation = -3450.489945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77031 -39.98468 -38.30114 -36.04744 -34.15634 -33.73308 -32.60121 -31.80447 -30.90201 -27.49253 -27.03989 -25.12246 -23.74253 -22.58500 -22.12907 -19.48433 -19.33644 -18.36372 -17.20661 -16.89037 -16.64855 -16.30383 -15.78583 -15.31058 -15.07486 -14.59640 -14.25911 -14.06622 -13.68981 -13.50348 -13.40712 -13.17811 -12.95314 -12.64700 -12.59494 -12.20377 -12.01772 -11.95355 -11.33227 -11.18296 -11.06833 -10.64590 -10.12308 -10.06223 -9.76770 -9.68183 -9.64107 -9.27129 -8.76107 -8.58181 -8.29087 -6.40465 -3.92697 0.80377 1.05778 2.72809 2.97472 2.99578 3.03242 3.11825 3.53836 3.71263 4.02942 4.05465 4.27962 4.44992 4.55116 4.61038 4.72241 4.80616 4.87612 5.08808 5.14447 5.19085 5.25105 5.33293 5.45663 5.54686 5.63730 5.71419 5.86250 5.87893 5.91449 5.98299 6.18840 6.43716 6.53953 7.15963 7.45723 7.82754 8.02941 8.30052 8.46507 8.83322 9.31321 9.67142 10.71921 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.003679 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.252986 B = 7609.112557 C = 7718.336244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.877 3.123 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.457 3.543 11 O -0.574 6.574 12 C -0.115 4.115 13 H 0.101 0.899 14 C -0.148 4.148 15 C 0.523 3.477 16 O -0.522 6.522 17 N -0.617 5.617 18 C 0.177 3.823 19 C 0.108 3.892 20 C -0.159 4.159 21 C -0.078 4.078 22 C -0.174 4.174 23 C 0.098 3.902 24 N -0.461 5.461 25 C 0.121 3.879 26 H 0.275 0.725 27 H 0.372 0.628 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.155 0.845 36 H 0.077 0.923 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.301 -6.755 4.216 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.703 3.297 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.216 5.216 10 C 0.243 3.757 11 O -0.458 6.458 12 C -0.137 4.137 13 H 0.119 0.881 14 C -0.188 4.188 15 C 0.311 3.689 16 O -0.397 6.397 17 N -0.351 5.351 18 C 0.054 3.946 19 C -0.031 4.031 20 C -0.180 4.180 21 C -0.104 4.104 22 C -0.194 4.194 23 C -0.060 4.060 24 N -0.170 5.170 25 C -0.002 4.002 26 H 0.086 0.914 27 H 0.205 0.795 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.172 0.828 36 H 0.095 0.905 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.194 -6.822 2.955 21.519 hybrid contribution 0.565 1.088 1.173 1.697 sum 20.760 -5.734 4.127 21.929 Atomic orbital electron populations 1.69615 1.05697 1.27748 1.48380 1.25053 0.95496 0.98076 0.97249 0.86711 0.79857 0.83968 0.79183 1.19329 1.20017 1.19369 1.19453 0.79087 0.96741 1.48533 0.86075 1.42185 1.07612 1.06161 1.65614 1.19199 0.87166 0.84655 0.84713 1.90566 1.69180 1.30888 1.55137 1.22122 0.95967 0.96865 0.98772 0.88084 1.22401 0.96783 1.00657 0.98988 1.20861 0.86905 0.81668 0.79449 1.90717 1.39941 1.73206 1.35845 1.48293 1.21766 1.19997 1.45072 1.20127 0.85404 0.90868 0.98193 1.21735 0.94158 0.92897 0.94340 1.22042 1.00129 1.01624 0.94158 1.21593 0.93391 0.96018 0.99372 1.22183 0.99977 0.98761 0.98493 1.22821 0.96245 0.97246 0.89649 1.67598 1.01755 1.12596 1.35033 1.22015 0.85563 0.97150 0.95434 0.91423 0.79454 0.86973 0.87816 0.88448 0.88248 0.84587 0.84770 0.84866 0.82822 0.90472 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.78 13.96 55.50 0.77 -24.01 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.76 27.74 -169.99 -4.71 14.05 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 7 C -0.31 -8.37 10.16 -14.94 -0.15 -8.52 16 8 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 9 N -0.58 -12.99 5.08 -10.96 -0.06 -13.05 16 10 C 0.46 9.54 7.01 -10.99 -0.08 9.47 16 11 O -0.57 -14.10 15.11 5.55 0.08 -14.02 16 12 C -0.11 -1.77 3.54 -90.14 -0.32 -2.09 16 13 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.15 -2.21 6.40 -26.74 -0.17 -2.38 16 15 C 0.52 8.44 8.02 -10.86 -0.09 8.35 16 16 O -0.52 -10.01 17.59 5.56 0.10 -9.91 16 17 N -0.62 -8.46 2.92 -173.71 -0.51 -8.97 16 18 C 0.18 2.04 6.24 -5.19 -0.03 2.01 16 19 C 0.11 1.27 6.36 -82.58 -0.53 0.75 16 20 C -0.16 -1.49 9.72 -39.44 -0.38 -1.87 16 21 C -0.08 -0.63 10.18 -39.28 -0.40 -1.03 16 22 C -0.17 -1.44 10.11 -39.44 -0.40 -1.84 16 23 C 0.10 1.02 11.18 -17.55 -0.20 0.82 16 24 N -0.46 -6.15 10.27 -9.47 -0.10 -6.25 16 25 C 0.12 1.66 6.69 -3.07 -0.02 1.64 16 26 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 28 H 0.11 1.74 7.89 -51.93 -0.41 1.33 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.10 0.82 8.04 -51.93 -0.42 0.40 16 31 H 0.10 1.25 7.92 -51.93 -0.41 0.84 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.47 7.01 -51.93 -0.36 1.11 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -34.26 323.50 -6.76 -41.02 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.35 Total: 9.85 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -2.86 Total: 6.41 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.11 Total: -52.27 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.18 Total: -23.93 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.26 -6.76 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.535 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds