Wall clock time and date at job start Tue Mar 31 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37667 * 119.96117 * 2 1 4 4 C 1.39796 * 119.91911 * 180.02562 * 3 2 1 5 5 C 1.47476 * 120.07979 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99718 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99851 * 179.97438 * 5 4 3 8 8 C 1.36899 * 119.99752 * 179.97438 * 7 5 4 9 9 H 1.07999 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.39024 * 120.00108 * 180.02562 * 8 7 5 11 11 N 1.31380 * 119.99702 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00189 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47212 * 89.99537 * 12 10 8 14 14 H 1.48507 * 109.46837 * 209.99380 * 12 10 8 15 15 H 1.48501 * 109.46961 * 329.99334 * 12 10 8 16 16 C 1.39847 * 119.84195 * 359.72436 * 4 3 2 17 17 C 1.37620 * 119.91738 * 0.52918 * 16 4 3 18 18 C 1.39129 * 119.95906 * 179.97438 * 2 1 3 19 19 N 1.39440 * 119.92282 * 359.97438 * 18 2 1 20 20 C 1.47045 * 125.41216 * 270.02794 * 19 18 2 21 21 C 1.54104 * 103.86486 * 179.97438 * 20 19 18 22 22 N 1.47058 * 103.85940 * 359.97438 * 21 20 19 23 23 C 1.33948 * 109.17878 * 359.74006 * 22 21 20 24 24 O 1.21583 * 123.04369 * 180.26012 * 23 22 21 25 25 H 1.09001 * 109.47284 * 270.02725 * 1 2 3 26 26 H 1.09000 * 109.47255 * 30.02157 * 1 2 3 27 27 H 1.08994 * 109.47423 * 150.02526 * 1 2 3 28 28 H 1.07996 * 120.03906 * 359.97438 * 3 2 1 29 29 H 0.96998 * 120.00350 * 0.02562 * 7 5 4 30 30 H 0.97004 * 120.00155 * 180.02562 * 11 10 8 31 31 H 1.07998 * 120.03992 * 180.29399 * 16 4 3 32 32 H 1.08002 * 119.96309 * 179.75249 * 17 16 4 33 33 H 1.09007 * 110.55198 * 298.58840 * 20 19 18 34 34 H 1.09000 * 110.55442 * 61.40225 * 20 19 18 35 35 H 1.09002 * 110.55369 * 118.59065 * 21 20 19 36 36 H 1.09002 * 110.55251 * 241.40788 * 21 20 19 37 37 H 0.97000 * 125.41179 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1927 0.0000 4 6 3.5924 1.1917 -0.0005 5 6 4.3325 2.4673 0.0000 6 8 3.7266 3.5218 0.0005 7 7 5.6803 2.4644 0.0000 8 6 6.3673 3.6485 0.0000 9 1 5.8293 4.5850 -0.0004 10 6 7.7575 3.6456 -0.0005 11 7 8.4120 2.5064 -0.0005 12 14 8.6950 5.2614 0.0002 13 1 8.9438 5.6886 1.4004 14 1 9.9920 5.0814 -0.7004 15 1 7.8944 6.2984 -0.6990 16 6 4.2874 -0.0219 0.0048 17 6 3.5935 -1.2103 -0.0005 18 6 2.2017 -1.2054 0.0005 19 7 1.5021 -2.4115 0.0016 20 6 1.0745 -3.1475 1.2007 21 6 0.3547 -4.3875 0.6358 22 7 0.4526 -4.2182 -0.8217 23 6 1.1064 -3.0802 -1.0895 24 8 1.3248 -2.6915 -2.2207 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6545 2.1280 -0.0004 29 1 6.1635 1.6233 -0.0007 30 1 9.3820 2.5043 -0.0005 31 1 5.3674 -0.0264 0.0091 32 1 4.1295 -2.1479 -0.0005 33 1 1.9382 -3.4441 1.7959 34 1 0.3878 -2.5447 1.7951 35 1 0.8610 -5.3002 0.9502 36 1 -0.6891 -4.4002 0.9498 37 1 0.0970 -4.8313 -1.4839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604545009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:01 Heat of formation + Delta-G solvation = -19.558426 kcal Electronic energy + Delta-G solvation = -22289.867616 eV Core-core repulsion = 18839.634674 eV Total energy + Delta-G solvation = -3450.232943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40946 -39.24766 -37.56764 -36.41318 -34.21859 -34.00334 -32.55468 -31.26916 -29.97912 -28.81798 -26.79627 -25.35973 -23.49588 -23.06860 -21.58710 -20.80395 -19.08639 -18.21175 -17.93510 -16.88559 -16.75566 -16.23215 -15.24921 -15.00712 -14.72075 -14.31023 -14.07002 -13.93169 -13.79776 -13.69352 -13.20405 -13.10714 -12.95548 -12.69990 -12.57182 -12.18415 -11.73925 -11.59326 -11.48186 -11.14209 -10.91707 -10.44932 -10.32240 -10.30113 -9.64244 -9.49721 -8.85181 -8.52922 -8.51626 -8.33432 -8.09061 -6.58460 -3.90500 1.18452 1.69062 2.41780 3.03010 3.12232 3.20907 3.27147 3.53305 3.72778 4.07480 4.10111 4.45035 4.56961 4.82924 4.93130 5.01784 5.10614 5.12491 5.27310 5.36571 5.49288 5.50480 5.65726 5.70457 5.74054 5.82625 6.04553 6.08289 6.35207 6.60656 6.72226 6.81113 6.87847 6.90707 7.30165 7.32803 7.40945 7.94235 8.48269 8.50910 9.03897 9.39760 9.95912 10.58256 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033067 B = 0.003426 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.574725 B = 8169.814804 C = 8581.342576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.082 4.082 3 C -0.072 4.072 4 C -0.079 4.079 5 C 0.462 3.538 6 O -0.597 6.597 7 N -0.540 5.540 8 C -0.293 4.293 9 H 0.109 0.891 10 C 0.023 3.977 11 N -0.888 5.888 12 Si 0.936 3.064 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.267 1.267 16 C -0.103 4.103 17 C -0.105 4.105 18 C 0.151 3.849 19 N -0.583 5.583 20 C 0.092 3.908 21 C 0.094 3.906 22 N -0.744 5.744 23 C 0.700 3.300 24 O -0.573 6.573 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.137 0.863 29 H 0.394 0.606 30 H 0.276 0.724 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 -15.980 4.801 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.083 4.083 5 C 0.251 3.749 6 O -0.484 6.484 7 N -0.174 5.174 8 C -0.423 4.423 9 H 0.127 0.873 10 C -0.180 4.180 11 N -0.527 5.527 12 Si 0.762 3.238 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.060 3.940 19 N -0.317 5.317 20 C -0.030 4.030 21 C -0.031 4.031 22 N -0.407 5.407 23 C 0.401 3.599 24 O -0.449 6.449 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.496 -14.969 4.228 20.593 hybrid contribution 0.752 -0.269 -0.121 0.808 sum -12.744 -15.238 4.107 20.285 Atomic orbital electron populations 1.20653 0.91115 1.02664 1.01764 1.19940 0.96169 0.91999 1.00285 1.20966 0.93001 0.97311 0.97963 1.20439 0.94219 0.94114 0.99493 1.17645 0.82760 0.87987 0.86518 1.90604 1.68043 1.32131 1.57661 1.41929 1.04566 1.09753 1.61140 1.19872 0.88914 0.87020 1.46507 0.87330 1.25405 0.96759 0.99115 0.96738 1.69597 1.09234 1.25750 1.48150 0.85761 0.78510 0.80941 0.78596 1.20130 1.20692 1.19112 1.21274 1.00264 0.91200 0.99576 1.21092 0.92671 0.98377 1.00337 1.16796 0.89435 0.82192 1.05576 1.43985 1.59220 1.22403 1.06112 1.22480 0.99813 0.91881 0.88859 1.22351 1.01469 0.98356 0.80934 1.45057 1.62500 1.25076 1.08063 1.15901 0.78741 0.80723 0.84557 1.91005 1.61972 1.71138 1.20794 0.91429 0.91239 0.92169 0.84515 0.77079 0.91372 0.84971 0.85900 0.89653 0.89769 0.89890 0.89950 0.72916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.76 36.00 0.35 -0.99 16 2 C -0.08 -1.31 5.89 -104.50 -0.62 -1.93 16 3 C -0.07 -1.34 9.23 -39.21 -0.36 -1.70 16 4 C -0.08 -1.63 5.88 -104.95 -0.62 -2.25 16 5 C 0.46 11.65 7.71 -12.50 -0.10 11.55 16 6 O -0.60 -16.88 15.91 5.26 0.08 -16.80 16 7 N -0.54 -14.01 5.23 -11.94 -0.06 -14.08 16 8 C -0.29 -8.15 9.68 -15.00 -0.15 -8.30 16 9 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 10 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 11 N -0.89 -23.59 13.05 55.50 0.72 -22.86 16 12 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 C -0.10 -1.86 9.53 -39.21 -0.37 -2.23 16 17 C -0.11 -1.68 9.95 -39.46 -0.39 -2.07 16 18 C 0.15 2.34 5.40 -83.72 -0.45 1.89 16 19 N -0.58 -7.42 2.05 -118.23 -0.24 -7.66 16 20 C 0.09 0.70 7.61 -3.17 -0.02 0.67 16 21 C 0.09 0.50 8.06 -3.16 -0.03 0.47 16 22 N -0.74 -6.62 6.37 -64.70 -0.41 -7.03 16 23 C 0.70 9.87 7.95 -88.40 -0.70 9.17 16 24 O -0.57 -11.03 17.65 5.29 0.09 -10.94 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.06 0.78 6.94 -51.93 -0.36 0.42 16 28 H 0.14 2.54 7.64 -52.49 -0.40 2.14 16 29 H 0.39 9.66 5.91 -40.82 -0.24 9.42 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.13 2.32 6.39 -52.49 -0.34 1.98 16 32 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.43 2.99 8.96 -40.82 -0.37 2.62 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -35.28 321.45 -7.72 -43.00 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.17 Total: 11.18 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -3.55 Total: 4.80 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.01 Total: -51.63 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 0.18 Total: -27.74 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.28 -7.72 -43.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604545009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.443 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds