Wall clock time and date at job start Tue Mar 31 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37667 * 119.96117 * 2 1 4 4 C 1.39796 * 119.91911 * 180.02562 * 3 2 1 5 5 C 1.47476 * 120.07979 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99718 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99851 * 179.97438 * 5 4 3 8 8 C 1.36899 * 119.99752 * 179.97438 * 7 5 4 9 9 H 1.07999 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.39024 * 120.00108 * 180.02562 * 8 7 5 11 11 N 1.31380 * 119.99702 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00189 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47212 * 89.99537 * 12 10 8 14 14 H 1.48507 * 109.46837 * 209.99380 * 12 10 8 15 15 H 1.48501 * 109.46961 * 329.99334 * 12 10 8 16 16 C 1.39847 * 119.84195 * 359.72436 * 4 3 2 17 17 C 1.37620 * 119.91738 * 0.52918 * 16 4 3 18 18 C 1.39129 * 119.95906 * 179.97438 * 2 1 3 19 19 N 1.39440 * 119.92282 * 359.97438 * 18 2 1 20 20 C 1.47045 * 125.41216 * 270.02794 * 19 18 2 21 21 C 1.54104 * 103.86486 * 179.97438 * 20 19 18 22 22 N 1.47058 * 103.85940 * 359.97438 * 21 20 19 23 23 C 1.33948 * 109.17878 * 359.74006 * 22 21 20 24 24 O 1.21583 * 123.04369 * 180.26012 * 23 22 21 25 25 H 1.09001 * 109.47284 * 270.02725 * 1 2 3 26 26 H 1.09000 * 109.47255 * 30.02157 * 1 2 3 27 27 H 1.08994 * 109.47423 * 150.02526 * 1 2 3 28 28 H 1.07996 * 120.03906 * 359.97438 * 3 2 1 29 29 H 0.96998 * 120.00350 * 0.02562 * 7 5 4 30 30 H 0.97004 * 120.00155 * 180.02562 * 11 10 8 31 31 H 1.07998 * 120.03992 * 180.29399 * 16 4 3 32 32 H 1.08002 * 119.96309 * 179.75249 * 17 16 4 33 33 H 1.09007 * 110.55198 * 298.58840 * 20 19 18 34 34 H 1.09000 * 110.55442 * 61.40225 * 20 19 18 35 35 H 1.09002 * 110.55369 * 118.59065 * 21 20 19 36 36 H 1.09002 * 110.55251 * 241.40788 * 21 20 19 37 37 H 0.97000 * 125.41179 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1927 0.0000 4 6 3.5924 1.1917 -0.0005 5 6 4.3325 2.4673 0.0000 6 8 3.7266 3.5218 0.0005 7 7 5.6803 2.4644 0.0000 8 6 6.3673 3.6485 0.0000 9 1 5.8293 4.5850 -0.0004 10 6 7.7575 3.6456 -0.0005 11 7 8.4120 2.5064 -0.0005 12 14 8.6950 5.2614 0.0002 13 1 8.9438 5.6886 1.4004 14 1 9.9920 5.0814 -0.7004 15 1 7.8944 6.2984 -0.6990 16 6 4.2874 -0.0219 0.0048 17 6 3.5935 -1.2103 -0.0005 18 6 2.2017 -1.2054 0.0005 19 7 1.5021 -2.4115 0.0016 20 6 1.0745 -3.1475 1.2007 21 6 0.3547 -4.3875 0.6358 22 7 0.4526 -4.2182 -0.8217 23 6 1.1064 -3.0802 -1.0895 24 8 1.3248 -2.6915 -2.2207 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6545 2.1280 -0.0004 29 1 6.1635 1.6233 -0.0007 30 1 9.3820 2.5043 -0.0005 31 1 5.3674 -0.0264 0.0091 32 1 4.1295 -2.1479 -0.0005 33 1 1.9382 -3.4441 1.7959 34 1 0.3878 -2.5447 1.7951 35 1 0.8610 -5.3002 0.9502 36 1 -0.6891 -4.4002 0.9498 37 1 0.0970 -4.8313 -1.4839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604545009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:01 Heat of formation + Delta-G solvation = -45.210528 kcal Electronic energy + Delta-G solvation = -22290.979975 eV Core-core repulsion = 18839.634674 eV Total energy + Delta-G solvation = -3451.345301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.38051 -40.82992 -39.25422 -37.47404 -36.15873 -35.21242 -33.91508 -33.17287 -31.19863 -29.66457 -28.11663 -27.11847 -24.88902 -23.78968 -22.96425 -22.10646 -20.69408 -20.18175 -18.92151 -18.21308 -17.77696 -17.53240 -16.87636 -16.24700 -16.04890 -15.63943 -15.58668 -15.43815 -15.19331 -14.78132 -14.75160 -14.42519 -14.26607 -13.65026 -13.51899 -13.28406 -13.14959 -13.05237 -12.84692 -12.77225 -12.51501 -12.16766 -12.11779 -11.62144 -11.51086 -10.57196 -10.45230 -10.16271 -9.92109 -9.70087 -9.64730 -8.58325 -6.03133 -0.25919 0.31305 1.38202 1.40724 1.50127 1.54451 1.93486 1.99846 2.25145 2.71553 3.01878 3.05159 3.25672 3.57743 3.76057 3.81354 4.08638 4.16295 4.25232 4.35001 4.40030 4.40427 4.65769 4.71068 4.72649 4.84790 4.95398 4.97589 5.11196 5.18513 5.32362 5.37830 5.41092 5.55372 5.89410 5.98396 6.22725 6.44913 6.46508 6.99063 7.39079 7.52216 7.95864 8.58829 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033067 B = 0.003426 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.574725 B = 8169.814804 C = 8581.342576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.083 4.083 3 C -0.076 4.076 4 C -0.111 4.111 5 C 0.461 3.539 6 O -0.637 6.637 7 N -0.548 5.548 8 C -0.339 4.339 9 H 0.085 0.915 10 C -0.009 4.009 11 N -0.909 5.909 12 Si 1.001 2.999 13 H -0.266 1.266 14 H -0.267 1.267 15 H -0.271 1.271 16 C -0.099 4.099 17 C -0.104 4.104 18 C 0.166 3.834 19 N -0.588 5.588 20 C 0.083 3.917 21 C 0.098 3.902 22 N -0.729 5.729 23 C 0.691 3.309 24 O -0.636 6.636 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.398 0.602 30 H 0.284 0.716 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.732 -18.601 6.074 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 C -0.096 4.096 4 C -0.114 4.114 5 C 0.251 3.749 6 O -0.527 6.527 7 N -0.183 5.183 8 C -0.468 4.468 9 H 0.103 0.897 10 C -0.210 4.210 11 N -0.548 5.548 12 Si 0.823 3.177 13 H -0.191 1.191 14 H -0.191 1.191 15 H -0.196 1.196 16 C -0.119 4.119 17 C -0.123 4.123 18 C 0.075 3.925 19 N -0.322 5.322 20 C -0.038 4.038 21 C -0.025 4.025 22 N -0.391 5.391 23 C 0.392 3.608 24 O -0.517 6.517 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.234 0.766 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -14.703 -17.683 5.555 23.659 hybrid contribution 0.928 0.329 -0.477 1.094 sum -13.775 -17.355 5.078 22.731 Atomic orbital electron populations 1.20691 0.88496 1.02797 1.03664 1.20242 0.98022 0.91133 0.99020 1.20980 0.92213 0.98258 0.98191 1.20153 0.94919 0.92787 1.03523 1.18382 0.82645 0.89224 0.84632 1.90547 1.68833 1.34224 1.59052 1.41910 1.04878 1.09484 1.61983 1.19835 0.89944 0.86950 1.50062 0.89683 1.26221 0.96749 1.02662 0.95372 1.69650 1.09840 1.27270 1.48029 0.84818 0.77272 0.76599 0.78996 1.19093 1.19149 1.19603 1.21258 1.00325 0.91090 0.99214 1.21323 0.93186 0.98371 0.99459 1.16944 0.89588 0.83500 1.02475 1.44041 1.58728 1.21544 1.07873 1.22926 1.01144 0.92451 0.87287 1.22692 1.03509 0.98298 0.78039 1.45036 1.60582 1.23176 1.10282 1.16196 0.79012 0.81827 0.83750 1.90962 1.64494 1.72944 1.23306 0.88483 0.91067 0.92034 0.85344 0.76602 0.90659 0.85023 0.83435 0.88119 0.88015 0.87027 0.86870 0.71814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.32 9.76 71.23 0.70 -1.63 16 2 C -0.08 -2.54 5.89 -19.79 -0.12 -2.66 16 3 C -0.08 -2.89 9.23 22.51 0.21 -2.68 16 4 C -0.11 -4.73 5.88 -20.08 -0.12 -4.85 16 5 C 0.46 24.55 7.71 86.68 0.67 25.22 16 6 O -0.64 -38.15 15.91 -4.09 -0.07 -38.22 16 7 N -0.55 -29.96 5.23 -309.95 -1.62 -31.58 16 8 C -0.34 -19.73 9.68 84.09 0.81 -18.92 16 9 H 0.09 5.24 7.15 -2.91 -0.02 5.22 16 10 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 11 N -0.91 -48.88 13.05 21.68 0.28 -48.59 16 12 Si 1.00 42.65 29.55 68.60 2.03 44.67 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 C -0.10 -3.61 9.53 22.51 0.21 -3.40 16 17 C -0.10 -3.18 9.95 22.35 0.22 -2.96 16 18 C 0.17 4.87 5.40 38.37 0.21 5.08 16 19 N -0.59 -13.24 2.05 -646.69 -1.32 -14.56 16 20 C 0.08 0.87 7.61 86.65 0.66 1.53 16 21 C 0.10 0.52 8.06 86.65 0.70 1.22 16 22 N -0.73 -10.39 6.37 -477.33 -3.04 -13.43 16 23 C 0.69 17.93 7.95 179.57 1.43 19.36 16 24 O -0.64 -24.12 17.65 -3.98 -0.07 -24.19 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 27 H 0.06 1.44 6.94 -2.39 -0.02 1.42 16 28 H 0.13 4.98 7.64 -2.91 -0.02 4.96 16 29 H 0.40 20.48 5.91 -92.71 -0.55 19.94 16 30 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.13 4.74 6.39 -2.91 -0.02 4.72 16 32 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.44 4.73 8.96 -92.71 -0.83 3.90 16 Total: -1.00 -81.52 321.45 1.99 -79.53 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.25 Total: 31.04 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 6.05 Total: 15.33 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -5.70 Total: -108.17 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -0.14 Total: -62.41 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -81.52 1.99 -79.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604545009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.322 kcal (2) G-P(sol) polarization free energy of solvation -81.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds