Wall clock time and date at job start Tue Mar 31 2020 02:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.39712 * 120.00096 * 179.97438 * 13 12 10 15 15 C 1.39024 * 119.99163 * 359.73105 * 14 13 12 16 16 C 1.38291 * 120.36832 * 179.72267 * 15 14 13 17 17 C 1.37837 * 120.04639 * 0.58745 * 16 15 14 18 18 C 1.39749 * 119.95657 * 359.66441 * 17 16 15 19 19 C 1.38786 * 119.99758 * 180.02562 * 14 13 12 20 20 C 1.47917 * 118.78525 * 180.02562 * 18 17 16 21 21 O 1.21546 * 120.45185 * 197.71578 * 20 18 17 22 22 N 1.34818 * 119.09509 * 17.68945 * 20 18 17 23 23 C 1.46041 * 121.16512 * 2.75381 * 22 20 18 24 24 C 1.50592 * 120.87177 * 179.67149 * 17 16 15 25 25 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 28 28 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 30 30 H 1.08002 * 119.81684 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.97951 * 180.28624 * 16 15 14 32 32 H 1.08001 * 120.23600 * 359.96411 * 19 14 13 33 33 H 0.96997 * 119.41296 * 182.72499 * 22 20 18 34 34 H 1.08998 * 109.15977 * 82.62882 * 23 22 20 35 35 H 1.09008 * 109.16006 * 201.86710 * 23 22 20 36 36 H 1.09005 * 109.40267 * 25.84455 * 24 17 16 37 37 H 1.09007 * 109.31691 * 266.08050 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7304 -7.2936 -0.0017 15 6 0.3636 -7.5476 0.0044 16 6 -0.1059 -8.8483 -0.0014 17 6 0.7821 -9.9025 -0.0010 18 6 2.1577 -9.6562 -0.0018 19 6 2.6324 -8.3484 -0.0016 20 6 3.0873 -10.8068 -0.0020 21 8 4.2510 -10.6586 0.3162 22 7 2.6261 -12.0222 -0.3593 23 6 1.2463 -12.2072 -0.8007 24 6 0.2913 -11.3262 0.0002 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0002 27 1 0.6170 -4.9209 0.8886 28 1 0.6176 -4.9205 -0.8913 29 1 3.1497 -5.7991 -0.0012 30 1 -0.3356 -6.7244 0.0087 31 1 -1.1690 -9.0384 -0.0013 32 1 3.6950 -8.1553 -0.0021 33 1 3.2213 -12.7872 -0.3229 34 1 1.1708 -11.9480 -1.8568 35 1 0.9652 -13.2519 -0.6678 36 1 -0.7017 -11.3673 -0.4476 37 1 0.2407 -11.6893 1.0268 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610539900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:21 Heat of formation + Delta-G solvation = -50.471141 kcal Electronic energy + Delta-G solvation = -21543.044581 eV Core-core repulsion = 18091.471163 eV Total energy + Delta-G solvation = -3451.573418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.67508 -38.89721 -38.08805 -36.54259 -34.81827 -33.96985 -31.64302 -31.34089 -30.86777 -28.99442 -26.67521 -24.64768 -24.04802 -23.14585 -21.66430 -19.73773 -19.03669 -18.13987 -17.73434 -17.42596 -16.28966 -15.92889 -15.66896 -15.15400 -14.97798 -14.82357 -14.38748 -14.05805 -14.04338 -13.66885 -13.53817 -13.33912 -13.16736 -12.71349 -12.43369 -12.15846 -11.76052 -11.64889 -11.38179 -11.16330 -11.14766 -10.47851 -10.34027 -10.04316 -9.87329 -9.65708 -9.32695 -8.95600 -8.66172 -8.13520 -7.22707 -6.54914 -3.96694 0.91258 1.53012 2.81855 3.03251 3.09875 3.20491 3.25829 3.58607 3.69891 3.90174 4.10263 4.42512 4.47429 4.57887 4.80241 4.87199 4.99301 5.13061 5.13105 5.26237 5.30356 5.53268 5.61661 5.64284 5.71784 5.83493 5.92456 6.05241 6.20893 6.37059 6.46485 6.57310 6.80177 7.00066 7.43180 7.44171 7.89169 8.01041 8.07235 8.42260 9.02110 9.35533 9.83953 10.62085 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.041463 B = 0.002717 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.142143 B =10303.703727 C =10916.700935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.428 3.572 11 O -0.593 6.593 12 C 0.112 3.888 13 N -0.722 5.722 14 C 0.221 3.779 15 C -0.178 4.178 16 C -0.071 4.071 17 C -0.128 4.128 18 C -0.091 4.091 19 C -0.134 4.134 20 C 0.566 3.434 21 O -0.536 6.536 22 N -0.729 5.729 23 C 0.115 3.885 24 C -0.089 4.089 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.413 0.587 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.402 0.598 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 -21.849 -1.482 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.214 3.786 11 O -0.479 6.479 12 C -0.016 4.016 13 N -0.352 5.352 14 C 0.114 3.886 15 C -0.202 4.202 16 C -0.090 4.090 17 C -0.131 4.131 18 C -0.094 4.094 19 C -0.158 4.158 20 C 0.355 3.645 21 O -0.414 6.414 22 N -0.382 5.382 23 C -0.010 4.010 24 C -0.127 4.127 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.252 0.748 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.238 0.762 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.676 -21.222 -1.325 21.771 hybrid contribution 0.166 0.693 -0.009 0.713 sum -4.510 -20.529 -1.334 21.061 Atomic orbital electron populations 1.69607 1.06004 1.28530 1.49536 1.25311 0.95677 0.99924 0.96770 0.85813 0.79271 0.80452 0.78530 1.20236 1.20767 1.19294 1.19732 0.93486 0.82008 1.48149 0.87711 1.41794 1.09375 1.04492 1.62907 1.19722 0.88353 0.84932 0.85594 1.90519 1.13778 1.86727 1.56897 1.20971 0.92157 0.86514 1.01995 1.44567 1.09929 1.00888 1.79804 1.17784 0.92671 0.84690 0.93412 1.20867 0.93550 0.97509 1.08229 1.20580 0.98943 0.91285 0.98191 1.19556 0.92115 0.95045 1.06388 1.19280 0.92750 0.92717 1.04686 1.20542 0.99723 0.90036 1.05474 1.18398 0.86932 0.83288 0.75907 1.90809 1.17858 1.84646 1.48039 1.45699 1.13516 1.09874 1.69105 1.21291 0.80814 1.00239 0.98627 1.20641 0.99141 0.91585 1.01337 0.91599 0.77138 0.90523 0.90522 0.74795 0.85413 0.85629 0.84928 0.76213 0.91576 0.89715 0.89088 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.57 13.05 55.50 0.72 -22.85 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.39 5.29 -10.96 -0.06 -13.45 16 10 C 0.43 9.71 7.85 -10.98 -0.09 9.62 16 11 O -0.59 -15.52 15.24 5.55 0.08 -15.43 16 12 C 0.11 1.90 5.39 -5.19 -0.03 1.87 16 13 N -0.72 -11.98 5.71 -59.80 -0.34 -12.32 16 14 C 0.22 3.26 6.65 -83.77 -0.56 2.70 16 15 C -0.18 -2.23 9.30 -39.27 -0.37 -2.60 16 16 C -0.07 -0.74 9.71 -39.71 -0.39 -1.13 16 17 C -0.13 -1.37 5.69 -104.26 -0.59 -1.96 16 18 C -0.09 -1.22 5.78 -105.04 -0.61 -1.82 16 19 C -0.13 -2.00 9.49 -39.05 -0.37 -2.37 16 20 C 0.57 7.67 7.79 -12.28 -0.10 7.58 16 21 O -0.54 -9.24 17.45 5.33 0.09 -9.14 16 22 N -0.73 -6.62 5.58 -61.72 -0.34 -6.96 16 23 C 0.11 0.69 7.03 -4.48 -0.03 0.66 16 24 C -0.09 -0.61 6.03 -28.13 -0.17 -0.78 16 25 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 27 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 28 H 0.08 1.16 7.95 -51.93 -0.41 0.74 16 29 H 0.41 7.46 7.45 -40.82 -0.30 7.16 16 30 H 0.13 1.45 6.70 -52.49 -0.35 1.10 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 2.06 7.84 -52.49 -0.41 1.65 16 33 H 0.40 2.94 8.92 -40.82 -0.36 2.58 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 36 H 0.09 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -32.72 319.81 -7.78 -40.49 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -4.20 Total: 15.42 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -3.53 Total: 3.96 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.02 Total: -55.59 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.18 Total: -24.58 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.72 -7.78 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610539900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.976 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds