Wall clock time and date at job start Tue Mar 31 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86792 * 119.99896 * 2 1 4 4 H 1.48505 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47470 * 299.99858 * 3 2 1 6 6 H 1.48497 * 109.47256 * 59.99894 * 3 2 1 7 7 C 1.40033 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99532 * 170.18230 * 7 2 1 9 9 C 1.41540 * 120.00398 * 350.17621 * 7 2 1 10 10 C 1.41169 * 120.99684 * 151.70447 * 9 7 2 11 11 C 1.37592 * 119.01690 * 179.97438 * 10 9 7 12 12 N 1.32083 * 121.10513 * 359.73158 * 11 10 9 13 13 C 1.32465 * 122.23179 * 0.56142 * 12 11 10 14 14 N 1.39474 * 119.58141 * 179.70794 * 13 12 11 15 15 C 1.34787 * 119.99801 * 5.10041 * 14 13 12 16 16 O 1.21280 * 119.99801 * 354.97708 * 15 14 13 17 17 C 1.50694 * 119.99835 * 174.97248 * 15 14 13 18 18 H 1.09002 * 109.12773 * 39.48716 * 17 15 14 19 19 C 1.52913 * 109.30289 * 279.99984 * 17 15 14 20 20 C 1.53343 * 108.81094 * 189.01873 * 19 17 15 21 21 C 1.53070 * 108.42815 * 67.44768 * 20 19 17 22 22 C 1.50181 * 109.89213 * 311.10580 * 21 20 19 23 23 O 1.21273 * 118.24481 * 197.55855 * 22 21 20 24 24 N 1.33353 * 123.50608 * 17.57552 * 22 21 20 25 25 C 1.38597 * 120.84144 * 359.43578 * 13 12 11 26 26 H 0.96993 * 119.99852 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.49462 * 359.95954 * 10 9 7 28 28 H 1.08003 * 119.44845 * 180.02562 * 11 10 9 29 29 H 0.96996 * 120.00518 * 185.10125 * 14 13 12 30 30 H 1.09002 * 109.60347 * 69.18451 * 19 17 15 31 31 H 1.09002 * 109.60670 * 308.85662 * 19 17 15 32 32 H 1.08999 * 109.68326 * 187.18292 * 20 19 17 33 33 H 1.09007 * 109.67561 * 307.68177 * 20 19 17 34 34 H 1.09007 * 109.40200 * 71.22968 * 21 20 19 35 35 H 1.08994 * 109.40898 * 190.97324 * 21 20 19 36 36 H 0.97003 * 117.94657 * 177.78130 * 24 22 21 37 37 H 1.08003 * 120.60404 * 180.25045 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2124 7 6 2.0076 -1.2128 -0.0005 8 1 3.0757 -1.2195 -0.1600 9 6 1.3154 -2.4296 0.2080 10 6 1.7911 -3.6400 -0.3412 11 6 1.0863 -4.7993 -0.1123 12 7 -0.0175 -4.7949 0.6131 13 6 -0.5085 -3.6858 1.1456 14 7 -1.6819 -3.7439 1.8973 15 6 -2.2526 -4.9353 2.1647 16 8 -1.7985 -5.9484 1.6765 17 6 -3.4549 -5.0085 3.0702 18 1 -4.1117 -4.1641 2.8608 19 6 -2.9953 -4.9422 4.5271 20 6 -4.1920 -5.2431 5.4374 21 6 -4.5933 -6.7071 5.2410 22 6 -4.7096 -7.0129 3.7752 23 8 -5.3204 -8.0065 3.4429 24 7 -4.1768 -6.2505 2.8196 25 6 0.1320 -2.4693 0.9700 26 1 -0.4849 0.8400 -0.0004 27 1 2.6948 -3.6557 -0.9325 28 1 1.4442 -5.7293 -0.5288 29 1 -2.0872 -2.9270 2.2277 30 1 -2.6120 -3.9452 4.7446 31 1 -2.2116 -5.6805 4.6973 32 1 -3.9133 -5.0754 6.4777 33 1 -5.0271 -4.5945 5.1722 34 1 -3.8365 -7.3529 5.6866 35 1 -5.5526 -6.8879 5.7258 36 1 -4.2732 -6.5415 1.8993 37 1 -0.2696 -1.5681 1.4093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611154184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:16 Heat of formation + Delta-G solvation = -64.734432 kcal Electronic energy + Delta-G solvation = -22311.566095 eV Core-core repulsion = 18859.374173 eV Total energy + Delta-G solvation = -3452.191921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.89895 -40.81919 -39.55674 -37.31035 -36.14104 -35.53389 -33.95998 -32.47746 -31.49473 -30.00112 -27.90984 -26.39542 -23.88709 -23.80549 -23.36972 -21.50004 -20.12112 -19.51456 -19.02286 -18.07929 -17.63555 -17.16607 -16.82531 -16.29706 -16.14443 -16.06949 -15.71528 -15.15077 -15.13697 -14.76058 -14.56710 -14.48626 -14.33924 -14.03712 -13.17881 -13.04676 -12.87532 -12.72295 -12.60636 -12.12713 -12.00673 -11.87430 -11.86032 -11.51320 -11.30617 -11.18871 -10.82811 -10.27502 -9.90704 -9.60447 -8.89844 -8.59794 -6.57416 0.68994 0.98891 1.43750 1.48260 1.51424 1.57465 1.72971 1.93509 2.22307 2.36076 2.82256 3.40880 3.55648 3.63805 3.74549 3.85510 4.01755 4.16876 4.27499 4.54190 4.71208 4.78401 4.83091 4.84044 4.90956 4.95062 5.08071 5.08683 5.24311 5.29077 5.45782 5.57822 5.61171 5.91805 6.11770 6.25007 6.46128 6.56577 6.78172 6.84687 7.07709 7.22057 7.80085 8.30601 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027131 B = 0.003620 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.774656 B = 7732.763793 C = 8430.296374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.081 0.919 9 C 0.114 3.886 10 C -0.294 4.294 11 C 0.110 3.890 12 N -0.577 5.577 13 C 0.331 3.669 14 N -0.641 5.641 15 C 0.485 3.515 16 O -0.521 6.521 17 C 0.137 3.863 18 H 0.137 0.863 19 C -0.128 4.128 20 C -0.108 4.108 21 C -0.133 4.133 22 C 0.517 3.483 23 O -0.610 6.610 24 N -0.701 5.701 25 C -0.248 4.248 26 H 0.292 0.708 27 H 0.114 0.886 28 H 0.146 0.854 29 H 0.428 0.572 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.394 0.606 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 1.634 11.906 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.176 4.176 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.517 4.517 8 H 0.099 0.901 9 C 0.106 3.894 10 C -0.317 4.317 11 C -0.044 4.044 12 N -0.297 5.297 13 C 0.105 3.895 14 N -0.289 5.289 15 C 0.271 3.729 16 O -0.393 6.393 17 C 0.028 3.972 18 H 0.154 0.846 19 C -0.166 4.166 20 C -0.146 4.146 21 C -0.172 4.172 22 C 0.307 3.693 23 O -0.492 6.492 24 N -0.351 5.351 25 C -0.273 4.273 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.164 0.836 29 H 0.266 0.734 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.229 0.771 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.385 -0.209 11.827 14.500 hybrid contribution 0.893 1.425 -1.135 2.029 sum -7.492 1.216 10.692 13.112 Atomic orbital electron populations 1.69766 1.08754 1.30803 1.35016 1.26741 0.95696 1.04292 0.90902 0.85063 0.79185 0.75885 0.79024 1.18478 1.19338 1.18411 1.19869 0.96130 0.90957 1.44747 0.90103 1.18014 0.91189 0.93118 0.87084 1.22137 1.05196 0.94571 1.09832 1.22176 0.90499 0.97426 0.94276 1.67331 1.16269 1.28995 1.17135 1.18436 0.87915 0.90291 0.92874 1.43343 1.23577 1.10320 1.51701 1.21709 0.85935 0.83147 0.82129 1.90811 1.62820 1.35354 1.50311 1.21108 0.90794 0.88822 0.96451 0.84578 1.21967 0.99669 1.05554 0.89440 1.21674 0.97406 0.93841 1.01646 1.21765 1.06195 1.00300 0.88932 1.21020 0.76604 0.81179 0.90492 1.90729 1.45113 1.29281 1.84089 1.45439 1.54525 1.24506 1.10619 1.21595 1.01688 0.95775 1.08287 0.89712 0.86776 0.83639 0.73368 0.86366 0.91972 0.86985 0.88886 0.87447 0.86382 0.77107 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.09 10.83 21.84 0.24 -37.85 16 2 C 0.04 1.83 5.30 85.29 0.45 2.28 16 3 Si 0.99 34.55 29.57 68.60 2.03 36.58 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 7 C -0.49 -24.36 9.13 23.52 0.21 -24.15 16 8 H 0.08 3.92 7.87 -2.91 -0.02 3.90 16 9 C 0.11 5.88 5.58 -21.12 -0.12 5.77 16 10 C -0.29 -14.26 9.90 22.84 0.23 -14.03 16 11 C 0.11 5.21 11.15 84.50 0.94 6.16 16 12 N -0.58 -28.75 7.85 -193.53 -1.52 -30.27 16 13 C 0.33 15.18 7.42 132.75 0.98 16.16 16 14 N -0.64 -21.86 5.39 -308.65 -1.66 -23.52 16 15 C 0.49 15.95 6.94 87.65 0.61 16.56 16 16 O -0.52 -22.85 14.68 -3.03 -0.04 -22.90 16 17 C 0.14 2.83 3.46 44.34 0.15 2.99 16 18 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 19 C -0.13 -1.90 5.28 30.68 0.16 -1.74 16 20 C -0.11 -1.02 6.04 30.73 0.19 -0.83 16 21 C -0.13 -2.01 6.03 29.71 0.18 -1.83 16 22 C 0.52 13.42 7.71 87.72 0.68 14.10 16 23 O -0.61 -21.58 17.78 -3.01 -0.05 -21.63 16 24 N -0.70 -17.85 4.80 -450.11 -2.16 -20.01 16 25 C -0.25 -12.02 8.59 22.98 0.20 -11.83 16 26 H 0.29 12.07 8.29 -92.71 -0.77 11.30 16 27 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 28 H 0.15 6.02 8.06 -2.91 -0.02 6.00 16 29 H 0.43 10.90 8.70 -92.71 -0.81 10.09 16 30 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 0.62 8.13 -2.38 -0.02 0.60 16 34 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.39 11.54 8.47 -92.71 -0.79 10.76 16 37 H 0.13 6.16 6.27 -2.91 -0.02 6.14 16 Total: -1.00 -74.35 317.39 1.23 -73.13 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.46 Total: 36.87 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 4.86 Total: 9.61 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -5.10 Total: -111.65 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.10 Total: -44.53 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -74.35 1.23 -73.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611154184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.391 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds