Wall clock time and date at job start Tue Mar 31 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46766 * 124.34531 * 2 1 4 4 C 1.54481 * 105.47037 * 196.99760 * 3 2 1 5 5 C 1.54624 * 101.76738 * 334.58221 * 4 3 2 6 6 H 1.09003 * 110.60131 * 143.53079 * 5 4 3 7 7 C 1.50697 * 110.48693 * 266.12405 * 5 4 3 8 8 O 1.21277 * 120.00129 * 356.22282 * 7 5 4 9 9 N 1.34781 * 120.00035 * 176.22547 * 7 5 4 10 10 C 1.39467 * 119.99789 * 174.94122 * 9 7 5 11 11 C 1.38598 * 119.57718 * 174.63432 * 10 9 7 12 12 C 1.40815 * 118.79682 * 179.72172 * 11 10 9 13 13 C 1.41540 * 120.99499 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00514 * 26.24402 * 13 12 11 15 15 C 1.40036 * 119.99744 * 206.24305 * 13 12 11 16 16 N 1.30739 * 119.99818 * 9.82453 * 15 13 12 17 17 Si 1.86802 * 119.99948 * 189.83115 * 15 13 12 18 18 H 1.48500 * 109.47060 * 89.99633 * 17 15 13 19 19 H 1.48498 * 109.47057 * 209.99727 * 17 15 13 20 20 H 1.48505 * 109.46926 * 329.99524 * 17 15 13 21 21 C 1.41169 * 118.00732 * 0.02562 * 12 11 10 22 22 C 1.37596 * 119.01206 * 359.97438 * 21 12 11 23 23 N 1.32069 * 121.11236 * 0.02562 * 22 21 12 24 24 C 1.34414 * 124.35217 * 179.97438 * 2 1 3 25 25 O 1.21287 * 124.94491 * 359.64224 * 24 2 1 26 26 H 1.09006 * 109.46679 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46904 * 300.04641 * 1 2 3 28 28 H 1.08997 * 109.47429 * 60.04999 * 1 2 3 29 29 H 1.09004 * 110.24281 * 315.99273 * 3 2 1 30 30 H 1.08997 * 110.24996 * 77.99671 * 3 2 1 31 31 H 1.09004 * 110.96803 * 216.46463 * 4 3 2 32 32 H 1.09001 * 110.97017 * 92.70635 * 4 3 2 33 33 H 0.96996 * 119.99871 * 354.94409 * 9 7 5 34 34 H 1.08003 * 120.60496 * 359.71206 * 11 10 9 35 35 H 0.97004 * 119.99347 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.49600 * 179.97438 * 21 12 11 37 37 H 1.08003 * 119.43771 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7011 0.7487 -0.4352 5 6 3.6899 -0.7377 -0.0093 6 1 4.2334 -1.3475 -0.7311 7 6 4.2835 -0.8966 1.3667 8 8 4.7474 0.0652 1.9417 9 7 4.2989 -2.1075 1.9582 10 6 4.9413 -2.2763 3.1846 11 6 4.8573 -3.4953 3.8388 12 6 5.5171 -3.6495 5.0732 13 6 5.4626 -4.8741 5.7808 14 1 5.3033 -5.7995 5.2473 15 6 5.6153 -4.8858 7.1727 16 7 5.6154 -3.7614 7.8398 17 14 5.8189 -6.5080 8.0764 18 1 7.2618 -6.8480 8.1642 19 1 5.2547 -6.3865 9.4447 20 1 5.1019 -7.5790 7.3386 21 6 6.2347 -2.5462 5.5837 22 6 6.2609 -1.3753 4.8615 23 7 5.6283 -1.2713 3.7069 24 6 2.2235 -1.1097 0.0005 25 8 1.7948 -2.2442 0.0072 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5146 0.8896 28 1 -0.3634 0.5130 -0.8904 29 1 1.8985 1.9382 -0.7105 30 1 2.3303 1.6432 1.0002 31 1 4.4753 1.3012 0.0972 32 1 3.8273 0.8446 -1.5137 33 1 3.8632 -2.8615 1.5311 34 1 4.2957 -4.3120 3.4098 35 1 5.7215 -3.7695 8.8040 36 1 6.7552 -2.6200 6.5271 37 1 6.8074 -0.5267 5.2459 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613994366.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:54 Heat of formation + Delta-G solvation = -47.562779 kcal Electronic energy + Delta-G solvation = -22426.992256 eV Core-core repulsion = 18975.544954 eV Total energy + Delta-G solvation = -3451.447302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18910 -40.76658 -39.41398 -37.56564 -36.28665 -35.35078 -33.85301 -32.63175 -30.67089 -28.80571 -27.94526 -27.72518 -24.56544 -23.71513 -22.75464 -21.59740 -20.57246 -19.71810 -18.86816 -17.94136 -17.69255 -16.91840 -16.87135 -16.71967 -16.06922 -15.79814 -15.75462 -15.20028 -14.85626 -14.74010 -14.61964 -14.22771 -14.11172 -13.83475 -13.54009 -13.23545 -13.14554 -12.90912 -12.89416 -12.43542 -12.17191 -12.11024 -11.85763 -11.53189 -11.27198 -11.22445 -10.95878 -10.01038 -9.82177 -9.68938 -8.93307 -8.63237 -6.62562 0.64930 0.90891 1.18747 1.39459 1.51067 1.53880 1.71523 1.95910 2.13551 2.19684 2.78377 3.15821 3.36620 3.52563 3.69789 3.90569 4.14217 4.21111 4.33811 4.42347 4.61799 4.66130 4.69505 4.77686 4.83292 4.87019 4.98252 5.01189 5.12034 5.21578 5.43688 5.44649 5.58478 5.91006 5.92192 6.03247 6.35608 6.54463 6.74723 6.79113 6.92550 7.12848 7.74088 8.25915 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.003667 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.126362 B = 7633.081966 C = 8144.961003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.617 5.617 3 C 0.098 3.902 4 C -0.110 4.110 5 C -0.142 4.142 6 H 0.157 0.843 7 C 0.514 3.486 8 O -0.503 6.503 9 N -0.652 5.652 10 C 0.345 3.655 11 C -0.315 4.315 12 C 0.118 3.882 13 C -0.484 4.484 14 H 0.084 0.916 15 C 0.035 3.965 16 N -0.818 5.818 17 Si 0.994 3.006 18 H -0.259 1.259 19 H -0.267 1.267 20 H -0.257 1.257 21 C -0.240 4.240 22 C 0.099 3.901 23 N -0.572 5.572 24 C 0.518 3.482 25 O -0.560 6.560 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.422 0.578 34 H 0.114 0.886 35 H 0.292 0.708 36 H 0.124 0.876 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 7.194 -14.069 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.350 5.350 3 C -0.024 4.024 4 C -0.147 4.147 5 C -0.167 4.167 6 H 0.174 0.826 7 C 0.299 3.701 8 O -0.375 6.375 9 N -0.299 5.299 10 C 0.117 3.883 11 C -0.341 4.341 12 C 0.109 3.891 13 C -0.514 4.514 14 H 0.103 0.897 15 C -0.181 4.181 16 N -0.444 5.444 17 Si 0.814 3.186 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.181 1.181 21 C -0.263 4.263 22 C -0.052 4.052 23 N -0.292 5.292 24 C 0.304 3.696 25 O -0.439 6.439 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.259 0.741 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.412 8.293 -13.943 17.444 hybrid contribution -0.190 -1.875 1.074 2.169 sum -6.603 6.418 -12.869 15.824 Atomic orbital electron populations 1.21794 0.76321 1.03597 1.03656 1.48327 1.07816 1.07373 1.71502 1.22372 0.90027 0.86845 1.03119 1.22688 0.97577 0.89935 1.04520 1.22268 0.94868 1.04128 0.95388 0.82591 1.20591 0.79436 0.82476 0.87566 1.90758 1.44118 1.38303 1.64318 1.43549 1.54000 1.13078 1.19322 1.18252 0.92777 0.90627 0.86663 1.21431 1.12986 0.97585 1.02049 1.18006 0.86946 0.93925 0.90187 1.19908 1.44706 0.93974 0.92859 0.89743 1.26902 0.90776 1.02140 0.98329 1.69802 1.34319 1.30012 1.10279 0.85023 0.79766 0.76589 0.77251 1.18326 1.19119 1.18098 1.22298 1.05775 0.95157 1.03109 1.22260 0.96121 0.96844 0.90018 1.67282 1.15818 1.30888 1.15194 1.20600 0.88737 0.84744 0.75479 1.90724 1.78789 1.22269 1.52162 0.91362 0.90998 0.88604 0.85826 0.91870 0.88172 0.85327 0.74079 0.86794 0.89674 0.85812 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 11.14 127.77 1.42 2.82 16 2 N -0.62 -12.99 3.33 -842.86 -2.81 -15.80 16 3 C 0.10 1.57 7.35 86.83 0.64 2.21 16 4 C -0.11 -1.84 6.53 31.65 0.21 -1.63 16 5 C -0.14 -3.47 3.34 -11.55 -0.04 -3.51 16 6 H 0.16 3.02 8.14 -2.39 -0.02 3.00 16 7 C 0.51 18.68 7.14 87.66 0.63 19.30 16 8 O -0.50 -21.64 13.75 -3.02 -0.04 -21.68 16 9 N -0.65 -26.29 5.34 -308.66 -1.65 -27.94 16 10 C 0.34 17.09 7.40 132.75 0.98 18.07 16 11 C -0.31 -16.19 9.73 22.99 0.22 -15.96 16 12 C 0.12 6.50 5.60 -21.12 -0.12 6.38 16 13 C -0.48 -25.81 9.14 23.52 0.21 -25.59 16 14 H 0.08 4.29 7.87 -2.91 -0.02 4.26 16 15 C 0.03 1.72 5.31 85.29 0.45 2.17 16 16 N -0.82 -41.98 10.69 21.84 0.23 -41.75 16 17 Si 0.99 37.08 29.57 68.60 2.03 39.10 16 18 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 19 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 21 C -0.24 -13.01 8.78 22.84 0.20 -12.81 16 22 C 0.10 5.06 11.15 84.51 0.94 6.00 16 23 N -0.57 -29.88 7.89 -193.54 -1.53 -31.41 16 24 C 0.52 14.11 7.19 87.90 0.63 14.75 16 25 O -0.56 -19.00 17.03 -3.05 -0.05 -19.06 16 26 H 0.07 1.33 7.53 -2.38 -0.02 1.31 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 2.04 6.91 -2.39 -0.02 2.02 16 32 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.42 15.09 8.28 -92.71 -0.77 14.33 16 34 H 0.11 5.40 8.06 -2.91 -0.02 5.38 16 35 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 36 H 0.12 6.80 6.11 -2.91 -0.02 6.78 16 37 H 0.15 6.58 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -73.66 318.68 2.92 -70.75 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.35 Total: 35.58 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.39 Total: 12.21 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -5.75 Total: -116.90 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.09 Total: -40.74 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.10 kcal Total: -73.66 2.92 -70.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613994366.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.184 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds