Wall clock time and date at job start Tue Mar 31 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46770 * 124.34724 * 2 1 4 4 C 1.54482 * 105.47153 * 197.03787 * 3 2 1 5 5 C 1.54621 * 101.76597 * 334.58476 * 4 3 2 6 6 H 1.08997 * 110.59956 * 266.06671 * 5 4 3 7 7 C 1.50705 * 110.48621 * 143.47509 * 5 4 3 8 8 O 1.21278 * 120.00027 * 3.77170 * 7 5 4 9 9 N 1.34779 * 119.99895 * 183.76866 * 7 5 4 10 10 C 1.39471 * 119.99822 * 185.41147 * 9 7 5 11 11 C 1.38592 * 119.58103 * 174.14556 * 10 9 7 12 12 C 1.40809 * 118.80040 * 180.02562 * 11 10 9 13 13 C 1.41542 * 120.99982 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00019 * 16.60504 * 13 12 11 15 15 C 1.40028 * 119.99874 * 196.60774 * 13 12 11 16 16 N 1.30742 * 120.00245 * 36.79008 * 15 13 12 17 17 Si 1.86799 * 120.00100 * 216.78967 * 15 13 12 18 18 H 1.48499 * 109.47462 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47049 * 59.99894 * 17 15 13 20 20 H 1.48503 * 109.46935 * 300.00162 * 17 15 13 21 21 C 1.41178 * 118.00284 * 0.26893 * 12 11 10 22 22 C 1.37594 * 119.01607 * 359.46142 * 21 12 11 23 23 N 1.32089 * 121.10561 * 0.55582 * 22 21 12 24 24 C 1.34413 * 124.35381 * 180.02562 * 2 1 3 25 25 O 1.21280 * 124.94117 * 359.60435 * 24 2 1 26 26 H 1.09006 * 109.46537 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46891 * 299.99930 * 1 2 3 28 28 H 1.08994 * 109.46914 * 60.00013 * 1 2 3 29 29 H 1.08998 * 110.24618 * 316.03700 * 3 2 1 30 30 H 1.08995 * 110.24606 * 78.03992 * 3 2 1 31 31 H 1.08996 * 110.96450 * 216.46079 * 4 3 2 32 32 H 1.09006 * 110.96744 * 92.70466 * 4 3 2 33 33 H 0.96996 * 119.99994 * 5.40921 * 9 7 5 34 34 H 1.08006 * 120.60019 * 359.97438 * 11 10 9 35 35 H 0.97001 * 119.99652 * 1.01522 * 16 15 13 36 36 H 1.08000 * 120.49160 * 179.72601 * 21 12 11 37 37 H 1.07990 * 119.44760 * 180.24991 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7489 -0.4362 5 6 3.6899 -0.7377 -0.0110 6 1 4.1203 -0.8553 0.9834 7 6 4.4401 -1.5782 -1.0120 8 8 5.0033 -1.0494 -1.9469 9 7 4.4852 -2.9175 -0.8681 10 6 5.2711 -3.6851 -1.7274 11 6 5.4082 -5.0450 -1.4978 12 6 6.2060 -5.8041 -2.3753 13 6 6.3776 -7.1961 -2.1848 14 1 5.7022 -7.7404 -1.5415 15 6 7.4231 -7.8674 -2.8305 16 7 8.5808 -7.2797 -2.9848 17 14 7.1639 -9.6027 -3.4715 18 1 8.4143 -10.0866 -4.1101 19 1 6.0661 -9.6022 -4.4716 20 1 6.8050 -10.4988 -2.3430 21 6 6.8338 -5.1341 -3.4477 22 6 6.6340 -3.7811 -3.5979 23 7 5.8775 -3.1049 -2.7523 24 6 2.2235 -1.1097 -0.0005 25 8 1.7947 -2.2441 0.0059 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8982 1.9385 -0.7099 30 1 2.3310 1.6428 1.0004 31 1 4.4754 1.3012 0.0959 32 1 3.8264 0.8452 -1.5148 33 1 3.9711 -3.3476 -0.1670 34 1 4.9127 -5.5138 -0.6604 35 1 8.7199 -6.3842 -2.6390 36 1 7.4582 -5.6763 -4.1423 37 1 7.1077 -3.2623 -4.4182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613994367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:57 Heat of formation + Delta-G solvation = -32.579013 kcal Electronic energy + Delta-G solvation = -22337.348914 eV Core-core repulsion = 18886.551357 eV Total energy + Delta-G solvation = -3450.797558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01186 -39.23724 -37.78465 -36.61159 -34.72570 -33.63259 -32.94346 -30.52366 -29.09721 -27.70417 -26.96477 -25.74301 -23.13504 -21.91977 -21.35128 -20.39252 -19.38301 -18.19616 -17.49632 -17.04843 -16.33554 -15.99495 -15.38185 -14.64829 -14.38943 -14.36375 -14.17804 -14.03597 -13.76872 -13.45036 -13.20479 -12.87780 -12.73998 -12.56811 -12.37137 -12.18844 -11.89531 -11.69495 -11.28704 -11.24785 -10.50545 -10.41293 -10.16489 -10.04743 -9.74130 -9.51660 -9.04850 -9.00864 -8.22207 -7.79146 -7.44183 -7.07080 -4.67117 2.20810 2.46907 2.73422 2.82783 3.10664 3.19731 3.31000 3.43946 3.52583 3.91937 4.06965 4.23575 4.53878 4.67644 4.71668 4.99328 5.00602 5.06762 5.23543 5.26201 5.44956 5.56809 5.62858 5.91163 5.93187 6.19574 6.53116 6.58221 6.70687 6.76902 6.82544 7.30216 7.34278 7.48507 7.64681 7.86303 7.91095 8.01256 8.24377 8.57532 8.67487 8.78662 9.64814 9.82497 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.003476 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.443916 B = 8052.579275 C = 8614.710591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.623 5.623 3 C 0.102 3.898 4 C -0.116 4.116 5 C -0.151 4.151 6 H 0.134 0.866 7 C 0.517 3.483 8 O -0.472 6.472 9 N -0.649 5.649 10 C 0.361 3.639 11 C -0.313 4.313 12 C 0.129 3.871 13 C -0.515 4.515 14 H 0.081 0.919 15 C 0.047 3.953 16 N -0.767 5.767 17 Si 1.065 2.935 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.292 4.292 22 C 0.128 3.872 23 N -0.569 5.569 24 C 0.527 3.473 25 O -0.517 6.517 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.413 0.587 34 H 0.101 0.899 35 H 0.302 0.698 36 H 0.111 0.889 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 13.002 7.251 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.358 5.358 3 C -0.021 4.021 4 C -0.154 4.154 5 C -0.175 4.175 6 H 0.152 0.848 7 C 0.300 3.700 8 O -0.342 6.342 9 N -0.295 5.295 10 C 0.136 3.864 11 C -0.339 4.339 12 C 0.121 3.879 13 C -0.544 4.544 14 H 0.100 0.900 15 C -0.180 4.180 16 N -0.387 5.387 17 Si 0.887 3.113 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.316 4.316 22 C -0.023 4.023 23 N -0.289 5.289 24 C 0.313 3.687 25 O -0.392 6.392 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.250 0.750 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.562 12.562 5.697 16.784 hybrid contribution -1.000 0.253 1.462 1.789 sum -10.561 12.815 7.159 18.084 Atomic orbital electron populations 1.21583 0.77712 1.03994 1.01505 1.48073 1.06646 1.07294 1.73784 1.22180 0.90599 0.87298 1.01990 1.22593 0.96036 0.91858 1.04870 1.22256 0.94644 0.98017 1.02621 0.84825 1.19749 0.81660 0.82661 0.85955 1.90791 1.42332 1.71299 1.29752 1.43444 1.45972 1.06281 1.33794 1.18039 0.91315 0.87479 0.89609 1.21023 1.15321 0.91824 1.05751 1.17525 0.88668 0.92752 0.88934 1.20555 1.14294 0.92950 1.26595 0.90046 1.27169 0.91262 1.07141 0.92391 1.70478 1.21683 1.16238 1.30351 0.83645 0.77382 0.72530 0.77695 1.19727 1.19648 1.19907 1.21934 1.11329 0.95566 1.02780 1.21786 0.93797 0.91290 0.95453 1.67262 1.16282 1.38954 1.06441 1.20425 0.88143 0.84683 0.75414 1.90759 1.78062 1.20732 1.49688 0.89761 0.91949 0.91938 0.89935 0.90750 0.88451 0.87938 0.75033 0.88081 0.88439 0.87110 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.14 59.85 0.67 1.42 16 2 N -0.62 -6.50 3.33 -180.28 -0.60 -7.11 16 3 C 0.10 0.76 7.35 -3.12 -0.02 0.73 16 4 C -0.12 -1.13 6.45 -25.10 -0.16 -1.29 16 5 C -0.15 -1.94 3.34 -91.78 -0.31 -2.25 16 6 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 7 C 0.52 9.75 7.12 -10.98 -0.08 9.67 16 8 O -0.47 -10.52 13.78 5.56 0.08 -10.44 16 9 N -0.65 -13.32 5.16 -11.49 -0.06 -13.38 16 10 C 0.36 8.98 7.41 -154.71 -1.15 7.83 16 11 C -0.31 -8.00 9.73 -38.48 -0.37 -8.37 16 12 C 0.13 3.49 5.45 -106.55 -0.58 2.91 16 13 C -0.52 -13.60 8.96 -37.65 -0.34 -13.94 16 14 H 0.08 2.09 8.05 -52.49 -0.42 1.67 16 15 C 0.05 1.17 4.77 -17.34 -0.08 1.09 16 16 N -0.77 -19.80 12.37 55.55 0.69 -19.11 16 17 Si 1.06 21.03 30.05 -169.99 -5.11 15.92 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.29 -7.68 8.26 -38.70 -0.32 -8.00 16 22 C 0.13 3.25 11.15 -17.68 -0.20 3.06 16 23 N -0.57 -14.92 7.86 -12.52 -0.10 -15.02 16 24 C 0.53 7.35 7.43 -10.86 -0.08 7.26 16 25 O -0.52 -8.98 16.04 5.56 0.09 -8.89 16 26 H 0.08 0.81 7.53 -51.93 -0.39 0.41 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.23 7.06 -51.93 -0.37 0.87 16 33 H 0.41 7.53 7.69 -40.82 -0.31 7.22 16 34 H 0.10 2.40 8.06 -52.48 -0.42 1.98 16 35 H 0.30 8.05 7.02 -40.82 -0.29 7.77 16 36 H 0.11 2.90 6.40 -52.49 -0.34 2.57 16 37 H 0.12 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -33.99 317.20 -7.55 -41.54 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.29 Total: 11.59 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -3.02 Total: 0.13 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.07 Total: -54.62 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.17 Total: -19.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.11 Total: 15.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.99 -7.55 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613994367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.961 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds