Wall clock time and date at job start Tue Mar 31 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46770 * 124.34724 * 2 1 4 4 C 1.54482 * 105.47153 * 197.03787 * 3 2 1 5 5 C 1.54621 * 101.76597 * 334.58476 * 4 3 2 6 6 H 1.08997 * 110.59956 * 266.06671 * 5 4 3 7 7 C 1.50705 * 110.48621 * 143.47509 * 5 4 3 8 8 O 1.21278 * 120.00027 * 3.77170 * 7 5 4 9 9 N 1.34779 * 119.99895 * 183.76866 * 7 5 4 10 10 C 1.39471 * 119.99822 * 185.41147 * 9 7 5 11 11 C 1.38592 * 119.58103 * 174.14556 * 10 9 7 12 12 C 1.40809 * 118.80040 * 180.02562 * 11 10 9 13 13 C 1.41542 * 120.99982 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00019 * 16.60504 * 13 12 11 15 15 C 1.40028 * 119.99874 * 196.60774 * 13 12 11 16 16 N 1.30742 * 120.00245 * 36.79008 * 15 13 12 17 17 Si 1.86799 * 120.00100 * 216.78967 * 15 13 12 18 18 H 1.48499 * 109.47462 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47049 * 59.99894 * 17 15 13 20 20 H 1.48503 * 109.46935 * 300.00162 * 17 15 13 21 21 C 1.41178 * 118.00284 * 0.26893 * 12 11 10 22 22 C 1.37594 * 119.01607 * 359.46142 * 21 12 11 23 23 N 1.32089 * 121.10561 * 0.55582 * 22 21 12 24 24 C 1.34413 * 124.35381 * 180.02562 * 2 1 3 25 25 O 1.21280 * 124.94117 * 359.60435 * 24 2 1 26 26 H 1.09006 * 109.46537 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46891 * 299.99930 * 1 2 3 28 28 H 1.08994 * 109.46914 * 60.00013 * 1 2 3 29 29 H 1.08998 * 110.24618 * 316.03700 * 3 2 1 30 30 H 1.08995 * 110.24606 * 78.03992 * 3 2 1 31 31 H 1.08996 * 110.96450 * 216.46079 * 4 3 2 32 32 H 1.09006 * 110.96744 * 92.70466 * 4 3 2 33 33 H 0.96996 * 119.99994 * 5.40921 * 9 7 5 34 34 H 1.08006 * 120.60019 * 359.97438 * 11 10 9 35 35 H 0.97001 * 119.99652 * 1.01522 * 16 15 13 36 36 H 1.08000 * 120.49160 * 179.72601 * 21 12 11 37 37 H 1.07990 * 119.44760 * 180.24991 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7489 -0.4362 5 6 3.6899 -0.7377 -0.0110 6 1 4.1203 -0.8553 0.9834 7 6 4.4401 -1.5782 -1.0120 8 8 5.0033 -1.0494 -1.9469 9 7 4.4852 -2.9175 -0.8681 10 6 5.2711 -3.6851 -1.7274 11 6 5.4082 -5.0450 -1.4978 12 6 6.2060 -5.8041 -2.3753 13 6 6.3776 -7.1961 -2.1848 14 1 5.7022 -7.7404 -1.5415 15 6 7.4231 -7.8674 -2.8305 16 7 8.5808 -7.2797 -2.9848 17 14 7.1639 -9.6027 -3.4715 18 1 8.4143 -10.0866 -4.1101 19 1 6.0661 -9.6022 -4.4716 20 1 6.8050 -10.4988 -2.3430 21 6 6.8338 -5.1341 -3.4477 22 6 6.6340 -3.7811 -3.5979 23 7 5.8775 -3.1049 -2.7523 24 6 2.2235 -1.1097 -0.0005 25 8 1.7947 -2.2441 0.0059 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8982 1.9385 -0.7099 30 1 2.3310 1.6428 1.0004 31 1 4.4754 1.3012 0.0959 32 1 3.8264 0.8452 -1.5148 33 1 3.9711 -3.3476 -0.1670 34 1 4.9127 -5.5138 -0.6604 35 1 8.7199 -6.3842 -2.6390 36 1 7.4582 -5.6763 -4.1423 37 1 7.1077 -3.2623 -4.4182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613994367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:56 Heat of formation + Delta-G solvation = -55.611204 kcal Electronic energy + Delta-G solvation = -22338.347665 eV Core-core repulsion = 18886.551357 eV Total energy + Delta-G solvation = -3451.796308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.15765 -40.84450 -39.51010 -37.63723 -36.58806 -35.42474 -33.87261 -32.52700 -30.71868 -28.86915 -27.78663 -27.69598 -24.45209 -23.86782 -22.75235 -21.71953 -20.65304 -20.06510 -18.78580 -18.04231 -17.74295 -17.41207 -16.55853 -16.39474 -16.30036 -15.81548 -15.73173 -15.29433 -14.86680 -14.79706 -14.68106 -14.44680 -14.06416 -13.78483 -13.64508 -13.45365 -13.16246 -12.95450 -12.72416 -12.42845 -12.06629 -12.01212 -11.88001 -11.55567 -11.26972 -11.00115 -10.96828 -10.25620 -9.80487 -9.76088 -9.43085 -9.00023 -6.73263 0.53458 0.90040 1.20469 1.49656 1.56562 1.72615 1.82755 1.93771 2.14069 2.26185 2.61722 3.14152 3.23739 3.54323 3.62774 3.90389 4.01642 4.15461 4.33940 4.40112 4.58923 4.63478 4.67580 4.69910 4.73014 4.83138 4.85247 4.96831 5.14495 5.30920 5.39305 5.45207 5.47245 5.64889 5.90716 6.00023 6.06058 6.42767 6.57096 6.71446 6.92888 7.10778 7.68979 7.79591 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.003476 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.443916 B = 8052.579275 C = 8614.710591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.617 5.617 3 C 0.105 3.895 4 C -0.112 4.112 5 C -0.141 4.141 6 H 0.166 0.834 7 C 0.511 3.489 8 O -0.510 6.510 9 N -0.648 5.648 10 C 0.359 3.641 11 C -0.332 4.332 12 C 0.104 3.896 13 C -0.537 4.537 14 H 0.082 0.918 15 C 0.015 3.985 16 N -0.777 5.777 17 Si 1.118 2.882 18 H -0.266 1.266 19 H -0.265 1.265 20 H -0.253 1.253 21 C -0.307 4.307 22 C 0.125 3.875 23 N -0.587 5.587 24 C 0.515 3.485 25 O -0.564 6.564 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.422 0.578 34 H 0.111 0.889 35 H 0.288 0.712 36 H 0.105 0.895 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 14.315 8.273 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.350 5.350 3 C -0.016 4.016 4 C -0.149 4.149 5 C -0.165 4.165 6 H 0.183 0.817 7 C 0.297 3.703 8 O -0.382 6.382 9 N -0.295 5.295 10 C 0.132 3.868 11 C -0.357 4.357 12 C 0.096 3.904 13 C -0.565 4.565 14 H 0.100 0.900 15 C -0.207 4.207 16 N -0.397 5.397 17 Si 0.933 3.067 18 H -0.190 1.190 19 H -0.190 1.190 20 H -0.176 1.176 21 C -0.331 4.331 22 C -0.027 4.027 23 N -0.308 5.308 24 C 0.302 3.698 25 O -0.444 6.444 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.261 0.739 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.679 13.958 6.765 18.832 hybrid contribution -0.708 -0.018 1.174 1.371 sum -11.387 13.940 7.939 19.673 Atomic orbital electron populations 1.21789 0.76282 1.03389 1.03839 1.48277 1.07740 1.07298 1.71703 1.22456 0.88282 0.86201 1.04689 1.22674 0.98838 0.89742 1.03694 1.22301 0.93510 0.98552 1.02149 0.81727 1.20774 0.81029 0.82096 0.86429 1.90764 1.43953 1.71778 1.31664 1.43573 1.45451 1.07131 1.33301 1.18335 0.90972 0.87935 0.89578 1.21188 1.15920 0.92430 1.06211 1.17898 0.89347 0.93539 0.89590 1.20826 1.15003 0.93105 1.27594 0.89969 1.28651 0.90157 1.10511 0.91370 1.70589 1.22469 1.15660 1.30935 0.83008 0.77642 0.68061 0.77940 1.19044 1.18964 1.17648 1.21912 1.12073 0.96052 1.03043 1.22183 0.93399 0.91212 0.95884 1.67400 1.16993 1.39304 1.07132 1.20614 0.88781 0.84889 0.75562 1.90733 1.78764 1.22632 1.52243 0.91898 0.88875 0.90258 0.87705 0.87091 0.85483 0.90543 0.73940 0.87087 0.90022 0.87653 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 11.14 127.77 1.42 2.62 16 2 N -0.62 -11.19 3.33 -842.89 -2.81 -13.99 16 3 C 0.11 1.10 7.35 86.83 0.64 1.74 16 4 C -0.11 -1.86 6.45 31.65 0.20 -1.66 16 5 C -0.14 -3.39 3.34 -11.55 -0.04 -3.43 16 6 H 0.17 2.90 8.14 -2.39 -0.02 2.88 16 7 C 0.51 19.25 7.12 87.66 0.62 19.87 16 8 O -0.51 -22.93 13.78 -3.02 -0.04 -22.98 16 9 N -0.65 -26.99 5.16 -308.65 -1.59 -28.59 16 10 C 0.36 18.25 7.41 132.75 0.98 19.23 16 11 C -0.33 -17.43 9.73 22.98 0.22 -17.21 16 12 C 0.10 5.79 5.45 -21.11 -0.11 5.67 16 13 C -0.54 -28.87 8.96 23.52 0.21 -28.66 16 14 H 0.08 4.29 8.05 -2.91 -0.02 4.26 16 15 C 0.02 0.76 4.77 85.29 0.41 1.17 16 16 N -0.78 -40.65 12.37 21.84 0.27 -40.38 16 17 Si 1.12 41.58 30.05 68.60 2.06 43.64 16 18 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 20 H -0.25 -8.51 7.11 99.48 0.71 -7.81 16 21 C -0.31 -16.61 8.26 22.84 0.19 -16.42 16 22 C 0.12 6.47 11.15 84.50 0.94 7.41 16 23 N -0.59 -31.44 7.86 -193.54 -1.52 -32.97 16 24 C 0.52 13.72 7.43 87.90 0.65 14.37 16 25 O -0.56 -19.72 16.04 -3.03 -0.05 -19.77 16 26 H 0.06 1.15 7.53 -2.38 -0.02 1.13 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.13 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.73 7.06 -2.38 -0.02 1.72 16 33 H 0.42 15.68 7.69 -92.71 -0.71 14.97 16 34 H 0.11 5.43 8.06 -2.91 -0.02 5.40 16 35 H 0.29 15.81 7.02 -92.71 -0.65 15.16 16 36 H 0.11 5.71 6.40 -2.91 -0.02 5.69 16 37 H 0.15 6.69 8.06 -2.92 -0.02 6.67 16 Total: -1.00 -77.09 317.20 3.18 -73.91 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: 0.52 Total: 36.41 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 6.35 Total: 4.71 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -5.65 Total: -115.92 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.09 Total: -42.75 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.06 Total: 43.64 kcal Total: -77.09 3.18 -73.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613994367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.296 kcal (2) G-P(sol) polarization free energy of solvation -77.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds