Wall clock time and date at job start Tue Mar 31 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48503 * 109.46867 * 264.98778 * 3 2 1 5 5 H 1.48494 * 109.47278 * 24.99023 * 3 2 1 6 6 H 1.48504 * 109.47198 * 144.99168 * 3 2 1 7 7 C 1.37875 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00585 * 190.18952 * 7 2 1 9 9 C 1.50703 * 119.99867 * 10.19473 * 7 2 1 10 10 O 1.42895 * 113.28375 * 52.41111 * 9 7 2 11 11 C 1.53502 * 114.20821 * 185.47866 * 9 7 2 12 12 N 1.47060 * 87.98511 * 139.65294 * 11 9 7 13 13 C 1.34780 * 136.05673 * 152.84557 * 12 11 9 14 14 O 1.21486 * 119.99889 * 359.97438 * 13 12 11 15 15 C 1.48453 * 120.00502 * 179.97438 * 13 12 11 16 16 C 1.39529 * 120.55184 * 179.97438 * 15 13 12 17 17 C 1.38762 * 118.26252 * 180.02562 * 16 15 13 18 18 N 1.32201 * 119.14831 * 359.97438 * 17 16 15 19 19 C 1.31883 * 121.03814 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.04643 * 180.02562 * 19 18 17 21 21 C 1.53003 * 117.49660 * 8.76405 * 20 19 18 22 22 C 1.53003 * 117.49816 * 300.10696 * 20 19 18 23 23 N 1.31588 * 121.91429 * 0.02562 * 19 18 17 24 24 C 1.47060 * 87.88989 * 333.10123 * 12 11 9 25 25 H 0.97004 * 119.99546 * 0.02562 * 1 2 3 26 26 H 0.96702 * 113.99774 * 317.07311 * 10 9 7 27 27 H 1.09000 * 113.46466 * 24.86754 * 11 9 7 28 28 H 1.09000 * 113.51708 * 254.44557 * 11 9 7 29 29 H 1.08000 * 120.87252 * 0.04957 * 16 15 13 30 30 H 1.08006 * 120.42688 * 180.02562 * 17 16 15 31 31 H 1.08997 * 115.55698 * 154.43946 * 20 19 18 32 32 H 1.09004 * 117.49973 * 0.02562 * 21 20 19 33 33 H 1.09000 * 117.50010 * 145.02001 * 21 20 19 34 34 H 1.08994 * 117.50249 * 214.97832 * 22 20 19 35 35 H 1.09006 * 117.49840 * 359.97438 * 22 20 19 36 36 H 1.08997 * 113.47224 * 141.68313 * 24 12 11 37 37 H 1.09005 * 113.46714 * 272.12405 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9852 -1.3948 5 1 1.3978 2.6809 0.5914 6 1 3.4898 1.4730 0.8032 7 6 2.0045 -1.1940 0.0005 8 1 3.0717 -1.2014 0.1660 9 6 1.2688 -2.4889 -0.2299 10 8 0.4646 -2.4792 -1.4110 11 6 2.1384 -3.7438 -0.0709 12 7 1.0011 -4.3827 0.6080 13 6 0.5577 -5.6438 0.7805 14 8 1.1710 -6.5747 0.2978 15 6 -0.6802 -5.8952 1.5605 16 6 -1.1498 -7.1960 1.7458 17 6 -2.3118 -7.3763 2.4825 18 7 -2.9294 -6.3187 2.9802 19 6 -2.4582 -5.1023 2.7861 20 6 -3.1979 -3.9286 3.3745 21 6 -4.3463 -4.2293 4.3398 22 6 -4.6461 -3.7119 2.9307 23 7 -1.3608 -4.8836 2.0937 24 6 0.5568 -3.0398 1.0103 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0355 -1.6616 -1.5396 27 1 3.0023 -3.5941 0.5767 28 1 2.3990 -4.2153 -1.0185 29 1 -0.6225 -8.0404 1.3272 30 1 -2.7062 -8.3681 2.6478 31 1 -2.5940 -3.0428 3.5712 32 1 -4.5664 -5.2761 4.5496 33 1 -4.4980 -3.5412 5.1714 34 1 -4.9949 -2.6836 2.8359 35 1 -5.0635 -4.4180 2.2128 36 1 -0.5253 -2.9133 0.9798 37 1 0.9951 -2.7006 1.9489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619444182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:32 Heat of formation + Delta-G solvation = 19.063816 kcal Electronic energy + Delta-G solvation = -22764.642513 eV Core-core repulsion = 19316.084357 eV Total energy + Delta-G solvation = -3448.558156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43042 -41.16220 -39.26491 -37.91713 -35.99583 -34.96246 -34.22489 -32.89119 -30.66329 -27.72284 -26.86098 -26.14023 -25.99318 -23.24258 -23.01734 -21.75889 -20.33162 -19.46164 -18.89857 -18.36122 -17.32667 -16.99189 -16.85914 -16.65343 -16.43792 -15.99156 -15.87184 -15.33227 -15.07420 -14.89354 -14.48866 -14.15713 -13.84731 -13.58984 -13.24546 -12.80943 -12.72188 -12.40775 -12.25136 -12.20602 -12.05404 -11.95828 -11.89515 -11.77021 -11.39213 -11.02978 -10.82040 -10.51930 -10.38857 -10.09931 -9.69855 -8.25957 -6.42158 -0.67411 -0.15171 1.47681 1.50754 1.55686 1.59028 1.69798 2.41101 2.52497 2.54945 2.86135 2.94438 3.12157 3.31738 3.62188 3.64663 3.89071 3.91501 4.08231 4.12147 4.14454 4.35676 4.47571 4.54220 4.58339 4.78595 4.79650 4.87964 4.95414 5.06508 5.14892 5.20543 5.23332 5.32273 5.71261 5.76061 5.87967 6.60088 6.63808 6.78224 6.98690 7.26485 7.30914 8.79939 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.005283 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.792455 B = 5298.638962 C = 6712.876599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.219 3.781 10 O -0.578 6.578 11 C 0.109 3.891 12 N -0.616 5.616 13 C 0.577 3.423 14 O -0.573 6.573 15 C 0.119 3.881 16 C -0.177 4.177 17 C 0.167 3.833 18 N -0.507 5.507 19 C 0.337 3.663 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.148 4.148 23 N -0.506 5.506 24 C 0.114 3.886 25 H 0.274 0.726 26 H 0.384 0.616 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.174 0.826 30 H 0.229 0.771 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.260 -7.995 8.312 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.166 4.166 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.093 0.907 9 C 0.178 3.822 10 O -0.387 6.387 11 C -0.013 4.013 12 N -0.346 5.346 13 C 0.365 3.635 14 O -0.454 6.454 15 C -0.028 4.028 16 C -0.200 4.200 17 C -0.001 4.001 18 N -0.221 5.221 19 C 0.070 3.930 20 C -0.151 4.151 21 C -0.165 4.165 22 C -0.187 4.187 23 N -0.223 5.223 24 C -0.008 4.008 25 H 0.083 0.917 26 H 0.234 0.766 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.192 0.808 30 H 0.245 0.755 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.339 -8.373 8.375 14.483 hybrid contribution 0.892 0.751 -0.593 1.308 sum -7.447 -7.622 7.781 13.195 Atomic orbital electron populations 1.69861 1.07036 1.28830 1.48626 1.25738 0.95708 1.02463 0.92643 0.85458 0.78666 0.78417 0.78412 1.20154 1.20817 1.19186 1.21514 0.95499 0.90704 1.51977 0.90675 1.19768 0.87941 0.91978 0.82543 1.86061 1.63824 1.44251 1.44577 1.23458 0.90702 0.90609 0.96531 1.49687 1.28133 1.05366 1.51440 1.17789 0.84206 0.81174 0.80341 1.90690 1.59502 1.42721 1.52522 1.21522 0.94268 0.91565 0.95403 1.23183 0.99072 0.97556 1.00165 1.24109 0.88703 0.99707 0.87593 1.68137 1.33312 0.99387 1.21280 1.22564 0.88049 0.92385 0.89958 1.20752 0.91446 0.95266 1.07686 1.23109 0.96538 1.03840 0.92975 1.23053 0.93051 1.03587 0.98964 1.68233 1.08574 1.36020 1.09451 1.23749 1.00793 0.76042 1.00245 0.91679 0.76584 0.87251 0.91741 0.80829 0.75485 0.86102 0.87153 0.86004 0.86525 0.89152 0.91653 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.87 11.81 21.45 0.25 -45.62 16 2 C 0.04 1.81 5.21 84.65 0.44 2.25 16 3 Si 0.97 39.20 29.55 68.60 2.03 41.23 16 4 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.56 -27.95 8.65 25.60 0.22 -27.73 16 8 H 0.08 3.63 7.83 -2.91 -0.02 3.60 16 9 C 0.22 10.75 1.40 -11.29 -0.02 10.73 16 10 O -0.58 -30.32 13.56 -148.98 -2.02 -32.34 16 11 C 0.11 4.85 8.04 83.18 0.67 5.52 16 12 N -0.62 -27.92 3.69 -862.03 -3.18 -31.10 16 13 C 0.58 25.15 8.08 86.97 0.70 25.85 16 14 O -0.57 -26.39 17.20 -3.67 -0.06 -26.45 16 15 C 0.12 4.41 6.79 41.99 0.29 4.70 16 16 C -0.18 -4.85 9.72 22.71 0.22 -4.63 16 17 C 0.17 3.54 11.31 84.76 0.96 4.50 16 18 N -0.51 -13.20 9.33 -187.88 -1.75 -14.95 16 19 C 0.34 10.55 7.31 138.78 1.01 11.57 16 20 C -0.13 -3.50 6.23 -11.54 -0.07 -3.57 16 21 C -0.13 -2.40 10.01 30.62 0.31 -2.09 16 22 C -0.15 -3.18 10.24 30.62 0.31 -2.87 16 23 N -0.51 -18.98 8.12 -177.08 -1.44 -20.42 16 24 C 0.11 5.34 6.93 83.09 0.58 5.91 16 25 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 26 H 0.38 20.12 7.09 -74.06 -0.53 19.60 16 27 H 0.11 4.38 8.10 -2.39 -0.02 4.36 16 28 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.17 4.12 7.74 -2.91 -0.02 4.10 16 30 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.12 3.43 8.14 -2.39 -0.02 3.42 16 32 H 0.11 2.05 7.54 -2.38 -0.02 2.03 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.06 3.25 7.21 -2.39 -0.02 3.23 16 37 H 0.08 3.61 8.10 -2.38 -0.02 3.59 16 Total: -1.00 -63.16 325.18 0.03 -63.13 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.59 Total: 36.38 kcal Atomic # 6 Polarization: 24.52 SS G_CDS: 5.62 Total: 30.14 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -6.12 Total: -112.09 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: -2.08 Total: -58.79 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -63.16 0.03 -63.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619444182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.195 kcal (2) G-P(sol) polarization free energy of solvation -63.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds