Wall clock time and date at job start Tue Mar 31 2020 02:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00298 * 2 1 4 4 H 1.48496 * 109.46954 * 273.07326 * 3 2 1 5 5 H 1.48501 * 109.46929 * 33.06950 * 3 2 1 6 6 H 1.48500 * 109.47094 * 153.07089 * 3 2 1 7 7 C 1.37879 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00198 * 1.70111 * 7 2 1 9 9 C 1.50701 * 119.99901 * 181.70237 * 7 2 1 10 10 C 1.52994 * 115.55124 * 90.83521 * 9 7 2 11 11 N 1.46502 * 109.47354 * 65.22171 * 10 9 7 12 12 C 1.34775 * 119.99963 * 175.21412 * 11 10 9 13 13 O 1.21504 * 120.00089 * 4.51857 * 12 11 10 14 14 C 1.48220 * 119.99824 * 184.51852 * 12 11 10 15 15 C 1.39637 * 119.65437 * 185.16003 * 14 12 11 16 16 C 1.38547 * 119.24361 * 180.22769 * 15 14 12 17 17 C 1.38582 * 118.55657 * 359.50877 * 16 15 14 18 18 C 1.39592 * 119.24527 * 0.24714 * 17 16 15 19 19 C 1.48223 * 119.65426 * 179.97438 * 18 17 16 20 20 N 1.34778 * 120.00145 * 174.85331 * 19 18 17 21 21 O 1.21512 * 119.99795 * 354.85939 * 19 18 17 22 22 N 1.32340 * 119.65510 * 4.88797 * 14 12 11 23 23 C 1.53000 * 117.49660 * 236.50273 * 9 7 2 24 24 C 1.53001 * 117.49882 * 305.16041 * 9 7 2 25 25 H 0.97003 * 119.99585 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47019 * 305.21739 * 10 9 7 27 27 H 1.08998 * 109.46919 * 185.22199 * 10 9 7 28 28 H 0.96991 * 119.99728 * 355.20838 * 11 10 9 29 29 H 1.07993 * 120.37427 * 0.02562 * 15 14 12 30 30 H 1.08003 * 120.71759 * 179.78123 * 16 15 14 31 31 H 1.07999 * 120.37807 * 180.22649 * 17 16 15 32 32 H 0.97001 * 119.99882 * 4.93610 * 20 19 18 33 33 H 0.97000 * 120.00009 * 184.93433 * 20 19 18 34 34 H 1.08999 * 117.50400 * 215.00325 * 23 9 7 35 35 H 1.09000 * 117.50295 * 0.02572 * 23 9 7 36 36 H 1.09003 * 117.49967 * 359.97438 * 24 9 7 37 37 H 1.08996 * 117.49894 * 144.97170 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4317 2.0839 -1.3980 5 1 1.4807 2.6330 0.7640 6 1 3.5777 1.4222 0.6341 7 6 2.0045 -1.1941 -0.0005 8 1 1.4648 -2.1292 -0.0287 9 6 3.5110 -1.1944 0.0382 10 6 4.1352 -1.2358 1.4345 11 7 3.8066 -2.5099 2.0788 12 6 4.3317 -2.8113 3.2828 13 8 5.0112 -1.9936 3.8712 14 6 4.0804 -4.1402 3.8893 15 6 4.5360 -4.4070 5.1820 16 6 4.3006 -5.6536 5.7388 17 6 3.6081 -6.5929 4.9913 18 6 3.1763 -6.2585 3.7067 19 6 2.4354 -7.2564 2.8991 20 7 1.9251 -6.9089 1.7010 21 8 2.2879 -8.3877 3.3172 22 7 3.4220 -5.0597 3.2019 23 6 4.2464 -1.9262 -1.0863 24 6 4.2456 -0.3962 -1.0407 25 1 -0.4850 0.8401 0.0004 26 1 3.7419 -0.4140 2.0327 27 1 5.2177 -1.1392 1.3515 28 1 3.2110 -3.1364 1.6388 29 1 5.0685 -3.6512 5.7401 30 1 4.6453 -5.8867 6.7354 31 1 3.4052 -7.5726 5.3979 32 1 2.1033 -6.0285 1.3348 33 1 1.3797 -7.5392 1.2048 34 1 5.1749 -2.4371 -0.8315 35 1 3.6407 -2.4070 -1.8544 36 1 3.6393 0.1289 -1.7788 37 1 5.1733 0.0999 -0.7556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619542026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:24 Heat of formation + Delta-G solvation = -12.695600 kcal Electronic energy + Delta-G solvation = -22313.268293 eV Core-core repulsion = 18863.332945 eV Total energy + Delta-G solvation = -3449.935348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93255 -39.40495 -38.43763 -37.08758 -34.09834 -33.65976 -32.53531 -32.16725 -31.62968 -27.10446 -25.54595 -25.06137 -24.02855 -21.86017 -21.33723 -20.22439 -19.40499 -18.31095 -17.55359 -17.03473 -16.50161 -16.14682 -15.59841 -15.46205 -15.07524 -15.02194 -14.72289 -14.41753 -13.99082 -13.61634 -13.47285 -13.06872 -12.78991 -12.50278 -12.29846 -12.11417 -11.21921 -10.97680 -10.87264 -10.52717 -10.26509 -10.25057 -10.08883 -9.81372 -9.75782 -9.54809 -9.42435 -9.23201 -8.73181 -8.61906 -8.41851 -6.20519 -4.25726 0.31980 0.72278 2.38045 3.07124 3.16804 3.24147 3.35804 3.36930 3.42275 3.81933 3.95162 4.35373 4.61270 4.65547 4.72584 4.74939 4.93755 5.08683 5.26755 5.31636 5.59838 5.68780 5.81634 5.96413 6.00317 6.14867 6.21634 6.37210 6.40876 6.61070 6.64034 6.88842 6.95257 7.02359 7.11497 7.40840 7.62040 8.02385 8.07035 8.35453 8.53053 8.79206 9.42310 10.90545 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.004587 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.856983 B = 6103.165646 C = 6777.075476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.080 3.920 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.256 1.256 7 C -0.492 4.492 8 H 0.079 0.921 9 C -0.016 4.016 10 C 0.154 3.846 11 N -0.677 5.677 12 C 0.560 3.440 13 O -0.546 6.546 14 C 0.091 3.909 15 C -0.091 4.091 16 C -0.088 4.088 17 C -0.096 4.096 18 C 0.072 3.928 19 C 0.582 3.418 20 N -0.831 5.831 21 O -0.542 6.542 22 N -0.429 5.429 23 C -0.178 4.178 24 C -0.192 4.192 25 H 0.266 0.734 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.414 0.586 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.416 0.584 33 H 0.406 0.594 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -10.683 6.818 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.017 4.017 10 C 0.031 3.969 11 N -0.325 5.325 12 C 0.343 3.657 13 O -0.425 6.425 14 C -0.050 4.050 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.068 4.068 19 C 0.365 3.635 20 N -0.394 5.394 21 O -0.419 6.419 22 N -0.143 5.143 23 C -0.215 4.215 24 C -0.230 4.230 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.251 0.749 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.247 0.753 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.695 -10.428 6.738 14.607 hybrid contribution 0.156 0.748 0.151 0.779 sum 7.851 -9.681 6.890 14.242 Atomic orbital electron populations 1.69884 1.06386 1.27297 1.49405 1.24990 0.94608 0.99171 0.93579 0.86838 0.80767 0.83279 0.78263 1.20561 1.22195 1.18039 1.20174 0.86010 0.94578 1.52169 0.90254 1.19617 0.95181 1.00900 0.86039 1.21228 0.97253 0.84410 0.94023 1.45747 1.47114 1.21328 1.18276 1.17793 0.80847 0.85078 0.81969 1.90758 1.40842 1.48688 1.62170 1.21352 0.96882 0.94167 0.92614 1.22383 0.96456 0.97651 0.94737 1.21656 0.96635 0.92423 1.00614 1.22292 0.94749 1.01136 0.93492 1.21071 1.00126 0.91822 0.93819 1.17794 0.78222 0.86111 0.81397 1.43667 1.53813 1.21404 1.20467 1.90819 1.59693 1.19897 1.71447 1.67416 1.09908 1.00619 1.36387 1.22883 1.01183 0.93684 1.03793 1.22937 1.01500 0.94245 1.04277 0.92451 0.91550 0.93213 0.74931 0.82771 0.83246 0.83009 0.75260 0.76230 0.90890 0.89314 0.89175 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.79 24.74 -169.99 -4.21 16.58 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -5.75 6.01 56.52 0.34 -5.41 16 7 C -0.49 -12.43 9.22 -34.44 -0.32 -12.75 16 8 H 0.08 2.15 8.06 -52.48 -0.42 1.72 16 9 C -0.02 -0.34 0.86 -155.66 -0.13 -0.47 16 10 C 0.15 3.10 5.24 -4.04 -0.02 3.08 16 11 N -0.68 -12.30 5.46 -61.13 -0.33 -12.63 16 12 C 0.56 9.81 7.80 -12.16 -0.09 9.71 16 13 O -0.55 -10.80 16.34 5.36 0.09 -10.71 16 14 C 0.09 1.32 6.75 -83.02 -0.56 0.76 16 15 C -0.09 -1.06 9.63 -38.95 -0.38 -1.43 16 16 C -0.09 -0.79 10.16 -39.34 -0.40 -1.19 16 17 C -0.10 -1.00 9.63 -38.95 -0.38 -1.37 16 18 C 0.07 0.91 6.75 -83.02 -0.56 0.35 16 19 C 0.58 7.45 8.08 -12.16 -0.10 7.35 16 20 N -0.83 -8.62 8.86 30.62 0.27 -8.35 16 21 O -0.54 -8.16 17.17 5.36 0.09 -8.07 16 22 N -0.43 -5.87 8.74 -6.37 -0.06 -5.92 16 23 C -0.18 -3.27 9.96 -26.69 -0.27 -3.53 16 24 C -0.19 -3.79 7.19 -26.69 -0.19 -3.98 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.07 1.46 7.60 -51.93 -0.39 1.07 16 27 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 28 H 0.41 7.24 7.69 -40.82 -0.31 6.93 16 29 H 0.15 1.64 7.65 -52.49 -0.40 1.24 16 30 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.15 1.36 7.65 -52.49 -0.40 0.96 16 32 H 0.42 4.24 8.17 -40.82 -0.33 3.90 16 33 H 0.41 3.43 8.93 -40.82 -0.36 3.07 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.09 1.87 6.66 -51.93 -0.35 1.53 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -31.38 323.52 -6.27 -37.66 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.29 Total: 12.98 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.49 Total: -1.43 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.66 Total: -51.89 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.18 Total: -18.78 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.21 Total: 16.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.38 -6.27 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619542026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.961 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds