Wall clock time and date at job start Tue Mar 31 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00298 * 2 1 4 4 H 1.48496 * 109.46954 * 273.07326 * 3 2 1 5 5 H 1.48501 * 109.46929 * 33.06950 * 3 2 1 6 6 H 1.48500 * 109.47094 * 153.07089 * 3 2 1 7 7 C 1.37879 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00198 * 1.70111 * 7 2 1 9 9 C 1.50701 * 119.99901 * 181.70237 * 7 2 1 10 10 C 1.52994 * 115.55124 * 90.83521 * 9 7 2 11 11 N 1.46502 * 109.47354 * 65.22171 * 10 9 7 12 12 C 1.34775 * 119.99963 * 175.21412 * 11 10 9 13 13 O 1.21504 * 120.00089 * 4.51857 * 12 11 10 14 14 C 1.48220 * 119.99824 * 184.51852 * 12 11 10 15 15 C 1.39637 * 119.65437 * 185.16003 * 14 12 11 16 16 C 1.38547 * 119.24361 * 180.22769 * 15 14 12 17 17 C 1.38582 * 118.55657 * 359.50877 * 16 15 14 18 18 C 1.39592 * 119.24527 * 0.24714 * 17 16 15 19 19 C 1.48223 * 119.65426 * 179.97438 * 18 17 16 20 20 N 1.34778 * 120.00145 * 174.85331 * 19 18 17 21 21 O 1.21512 * 119.99795 * 354.85939 * 19 18 17 22 22 N 1.32340 * 119.65510 * 4.88797 * 14 12 11 23 23 C 1.53000 * 117.49660 * 236.50273 * 9 7 2 24 24 C 1.53001 * 117.49882 * 305.16041 * 9 7 2 25 25 H 0.97003 * 119.99585 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47019 * 305.21739 * 10 9 7 27 27 H 1.08998 * 109.46919 * 185.22199 * 10 9 7 28 28 H 0.96991 * 119.99728 * 355.20838 * 11 10 9 29 29 H 1.07993 * 120.37427 * 0.02562 * 15 14 12 30 30 H 1.08003 * 120.71759 * 179.78123 * 16 15 14 31 31 H 1.07999 * 120.37807 * 180.22649 * 17 16 15 32 32 H 0.97001 * 119.99882 * 4.93610 * 20 19 18 33 33 H 0.97000 * 120.00009 * 184.93433 * 20 19 18 34 34 H 1.08999 * 117.50400 * 215.00325 * 23 9 7 35 35 H 1.09000 * 117.50295 * 0.02572 * 23 9 7 36 36 H 1.09003 * 117.49967 * 359.97438 * 24 9 7 37 37 H 1.08996 * 117.49894 * 144.97170 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4317 2.0839 -1.3980 5 1 1.4807 2.6330 0.7640 6 1 3.5777 1.4222 0.6341 7 6 2.0045 -1.1941 -0.0005 8 1 1.4648 -2.1292 -0.0287 9 6 3.5110 -1.1944 0.0382 10 6 4.1352 -1.2358 1.4345 11 7 3.8066 -2.5099 2.0788 12 6 4.3317 -2.8113 3.2828 13 8 5.0112 -1.9936 3.8712 14 6 4.0804 -4.1402 3.8893 15 6 4.5360 -4.4070 5.1820 16 6 4.3006 -5.6536 5.7388 17 6 3.6081 -6.5929 4.9913 18 6 3.1763 -6.2585 3.7067 19 6 2.4354 -7.2564 2.8991 20 7 1.9251 -6.9089 1.7010 21 8 2.2879 -8.3877 3.3172 22 7 3.4220 -5.0597 3.2019 23 6 4.2464 -1.9262 -1.0863 24 6 4.2456 -0.3962 -1.0407 25 1 -0.4850 0.8401 0.0004 26 1 3.7419 -0.4140 2.0327 27 1 5.2177 -1.1392 1.3515 28 1 3.2110 -3.1364 1.6388 29 1 5.0685 -3.6512 5.7401 30 1 4.6453 -5.8867 6.7354 31 1 3.4052 -7.5726 5.3979 32 1 2.1033 -6.0285 1.3348 33 1 1.3797 -7.5392 1.2048 34 1 5.1749 -2.4371 -0.8315 35 1 3.6407 -2.4070 -1.8544 36 1 3.6393 0.1289 -1.7788 37 1 5.1733 0.0999 -0.7556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619542026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:23 Heat of formation + Delta-G solvation = -37.942939 kcal Electronic energy + Delta-G solvation = -22314.363099 eV Core-core repulsion = 18863.332945 eV Total energy + Delta-G solvation = -3451.030155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94229 -40.63663 -39.59690 -38.66033 -35.26026 -34.87082 -34.19587 -33.48575 -32.60844 -28.64401 -27.36985 -26.01064 -25.17504 -23.39479 -22.32417 -21.49385 -21.05148 -19.47714 -18.65810 -18.35403 -17.90640 -17.08115 -16.98707 -16.82006 -16.47052 -16.25541 -15.98639 -15.68234 -15.26395 -14.89139 -14.69469 -14.49388 -14.22532 -14.15145 -13.70092 -13.16990 -13.07533 -12.74825 -12.17172 -12.00345 -11.96000 -11.53560 -11.27718 -11.11064 -10.97949 -10.78662 -10.75791 -10.63359 -10.41244 -10.32156 -9.91864 -8.27787 -6.34374 -0.62224 -0.19154 1.35378 1.38138 1.42549 1.52602 1.90127 2.05483 2.30201 2.38564 2.78985 2.90247 3.07626 3.25999 3.68850 3.82279 3.86793 3.92767 4.02179 4.32984 4.37281 4.42500 4.42706 4.52889 4.78457 4.87345 4.92794 4.98070 5.10803 5.29335 5.37667 5.46172 5.51160 5.71063 5.74533 6.15373 6.30156 6.39832 6.67232 6.75154 7.12972 7.16382 7.36409 8.86484 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.004587 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.856983 B = 6103.165646 C = 6777.075476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.270 1.270 5 H -0.306 1.306 6 H -0.236 1.236 7 C -0.478 4.478 8 H 0.048 0.952 9 C -0.040 4.040 10 C 0.162 3.838 11 N -0.681 5.681 12 C 0.560 3.440 13 O -0.573 6.573 14 C 0.065 3.935 15 C -0.088 4.088 16 C -0.066 4.066 17 C -0.087 4.087 18 C 0.055 3.945 19 C 0.580 3.420 20 N -0.820 5.820 21 O -0.568 6.568 22 N -0.439 5.439 23 C -0.152 4.152 24 C -0.191 4.191 25 H 0.263 0.737 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.415 0.585 29 H 0.164 0.836 30 H 0.196 0.804 31 H 0.170 0.830 32 H 0.418 0.582 33 H 0.415 0.585 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.931 -11.528 7.783 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.196 1.196 5 H -0.234 1.234 6 H -0.159 1.159 7 C -0.516 4.516 8 H 0.066 0.934 9 C -0.041 4.041 10 C 0.038 3.962 11 N -0.329 5.329 12 C 0.346 3.654 13 O -0.453 6.453 14 C -0.076 4.076 15 C -0.109 4.109 16 C -0.091 4.091 17 C -0.108 4.108 18 C -0.086 4.086 19 C 0.363 3.637 20 N -0.383 5.383 21 O -0.447 6.447 22 N -0.154 5.154 23 C -0.189 4.189 24 C -0.229 4.229 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.252 0.748 29 H 0.181 0.819 30 H 0.213 0.787 31 H 0.188 0.812 32 H 0.249 0.751 33 H 0.248 0.752 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.953 -11.283 7.672 16.889 hybrid contribution -0.565 0.870 -0.125 1.045 sum 9.388 -10.414 7.547 15.923 Atomic orbital electron populations 1.70020 1.08109 1.27823 1.52378 1.25734 0.95112 1.02513 0.93953 0.86021 0.80344 0.79342 0.78609 1.19578 1.23418 1.15886 1.20356 0.88487 0.93003 1.49739 0.93408 1.19463 0.92887 1.04251 0.87526 1.20982 0.97771 0.84576 0.92834 1.45732 1.47549 1.20771 1.18852 1.18218 0.79829 0.86079 0.81305 1.90728 1.41939 1.49950 1.62680 1.21016 0.99447 0.93096 0.94033 1.22581 0.95787 0.98988 0.93513 1.22102 0.94634 0.90485 1.01914 1.22615 0.93520 1.02137 0.92489 1.21192 1.01014 0.91414 0.94994 1.17913 0.78152 0.85851 0.81765 1.43629 1.53126 1.21587 1.19911 1.90802 1.60998 1.20805 1.72144 1.67250 1.10139 1.01015 1.36952 1.22898 1.01437 0.93154 1.01448 1.23014 1.01857 0.95273 1.02764 0.92764 0.94083 0.91658 0.74781 0.81880 0.78698 0.81208 0.75071 0.75200 0.88069 0.89495 0.90336 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.33 13.96 21.45 0.30 -56.03 16 2 C 0.02 1.37 5.47 84.66 0.46 1.83 16 3 Si 0.93 42.92 24.74 68.60 1.70 44.62 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.24 -10.00 6.01 99.48 0.60 -9.40 16 7 C -0.48 -24.55 9.22 25.60 0.24 -24.32 16 8 H 0.05 2.69 8.06 -2.91 -0.02 2.66 16 9 C -0.04 -1.65 0.86 -52.93 -0.05 -1.69 16 10 C 0.16 6.37 5.24 86.38 0.45 6.82 16 11 N -0.68 -24.58 5.46 -465.63 -2.54 -27.12 16 12 C 0.56 19.37 7.80 86.90 0.68 20.05 16 13 O -0.57 -22.32 16.34 -3.73 -0.06 -22.38 16 14 C 0.06 1.80 6.75 42.06 0.28 2.09 16 15 C -0.09 -1.82 9.63 22.68 0.22 -1.60 16 16 C -0.07 -0.94 10.16 22.43 0.23 -0.71 16 17 C -0.09 -1.56 9.63 22.68 0.22 -1.34 16 18 C 0.05 1.31 6.75 42.05 0.28 1.59 16 19 C 0.58 14.37 8.08 86.90 0.70 15.08 16 20 N -0.82 -16.68 8.86 -175.34 -1.55 -18.24 16 21 O -0.57 -16.59 17.17 -3.75 -0.06 -16.66 16 22 N -0.44 -11.67 8.74 -174.08 -1.52 -13.19 16 23 C -0.15 -5.21 9.96 30.62 0.30 -4.91 16 24 C -0.19 -7.07 7.19 30.62 0.22 -6.85 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.04 1.80 7.60 -2.39 -0.02 1.78 16 27 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 28 H 0.42 14.63 7.69 -92.71 -0.71 13.92 16 29 H 0.16 3.08 7.65 -2.91 -0.02 3.05 16 30 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 31 H 0.17 2.47 7.65 -2.91 -0.02 2.45 16 32 H 0.42 8.46 8.17 -92.71 -0.76 7.71 16 33 H 0.42 6.83 8.93 -92.71 -0.83 6.01 16 34 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.08 3.10 6.66 -2.39 -0.02 3.09 16 37 H 0.10 3.23 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -69.39 323.52 -0.76 -70.15 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -1.26 Total: 32.81 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.24 Total: 6.02 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -5.32 Total: -114.58 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.13 Total: -39.03 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.70 Total: 44.62 kcal Total: -69.39 -0.76 -70.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619542026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.209 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds