Wall clock time and date at job start Tue Mar 31 2020 02:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42097 * 108.57971 * 2 1 4 4 O 1.42099 * 108.57976 * 228.96626 * 2 1 3 5 5 C 1.81408 * 101.91685 * 114.48126 * 2 1 3 6 6 C 1.53000 * 109.46799 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 5 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58544 * 10 9 7 12 12 C 1.53035 * 109.38268 * 305.59133 * 11 10 9 13 13 C 1.53043 * 109.53810 * 61.23936 * 12 11 10 14 14 H 1.09005 * 109.49595 * 58.58664 * 13 12 11 15 15 C 1.50705 * 109.52169 * 178.66288 * 13 12 11 16 16 H 1.08006 * 119.99596 * 119.85554 * 15 13 12 17 17 C 1.37871 * 120.00476 * 299.85549 * 15 13 12 18 18 N 1.31522 * 119.99903 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00389 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47291 * 89.99719 * 19 17 15 21 21 H 1.48496 * 109.47506 * 210.00164 * 19 17 15 22 22 H 1.48500 * 109.46810 * 329.99917 * 19 17 15 23 23 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 24 24 H 1.08995 * 109.47346 * 305.51790 * 1 2 3 25 25 H 1.09006 * 109.47053 * 65.51572 * 1 2 3 26 26 H 1.08998 * 109.47551 * 185.51454 * 1 2 3 27 27 H 1.09001 * 109.46823 * 60.00081 * 5 2 1 28 28 H 1.08992 * 109.47429 * 300.00117 * 5 2 1 29 29 H 1.09002 * 109.47398 * 300.00340 * 6 5 2 30 30 H 1.09001 * 109.47194 * 60.00520 * 6 5 2 31 31 H 1.09000 * 109.59185 * 353.42700 * 10 9 7 32 32 H 1.09004 * 109.58365 * 113.84987 * 10 9 7 33 33 H 1.09003 * 109.56176 * 185.55325 * 11 10 9 34 34 H 1.09000 * 109.36023 * 65.50261 * 11 10 9 35 35 H 1.09007 * 109.46249 * 301.21815 * 12 11 10 36 36 H 1.09006 * 109.45861 * 181.25777 * 12 11 10 37 37 H 0.96996 * 120.00298 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.58607 * 246.15487 * 23 9 7 39 39 H 1.09000 * 109.58547 * 6.57598 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8843 -1.0160 5 6 2.1886 -0.7355 1.6154 6 6 3.7054 -0.8194 1.7981 7 6 4.0166 -1.4311 3.1398 8 8 3.1141 -1.7663 3.8774 9 7 5.2978 -1.6045 3.5205 10 6 6.4017 -1.2081 2.6358 11 6 7.3397 -2.3989 2.4461 12 6 7.7859 -2.9170 3.8152 13 6 6.5636 -3.3842 4.6089 14 1 6.0463 -4.1664 4.0533 15 6 7.0067 -3.9246 5.9441 16 1 6.6496 -3.4696 6.8563 17 6 7.8678 -4.9999 6.0014 18 7 8.3022 -5.5543 4.8906 19 14 8.4163 -5.6702 7.6564 20 1 7.4687 -6.7227 8.1029 21 1 9.7770 -6.2510 7.5289 22 1 8.4394 -4.5697 8.6531 23 6 5.6170 -2.1999 4.8252 24 1 -0.3634 0.5970 0.8364 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3634 -1.0229 0.0988 27 1 1.7609 -1.7368 1.6666 28 1 1.7609 -0.1170 2.4043 29 1 4.1327 -1.4383 1.0091 30 1 4.1335 0.1817 1.7467 31 1 6.0030 -0.9011 1.6689 32 1 6.9517 -0.3814 3.0857 33 1 8.2128 -2.0880 1.8724 34 1 6.8151 -3.1904 1.9109 35 1 8.2887 -2.1177 4.3598 36 1 8.4728 -3.7527 3.6810 37 1 8.9083 -6.3105 4.9308 38 1 6.1015 -1.4559 5.4577 39 1 4.7006 -2.5472 5.3024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701206037.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:07 Heat of formation + Delta-G solvation = -115.644467 kcal Electronic energy + Delta-G solvation = -21438.807848 eV Core-core repulsion = 18087.559502 eV Total energy + Delta-G solvation = -3351.248346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77205 -37.20776 -36.94420 -36.26513 -33.69417 -33.09926 -31.39212 -30.26300 -29.90691 -26.01157 -25.05565 -23.61897 -21.72028 -19.90057 -19.11975 -18.39156 -17.46322 -16.55446 -16.44991 -16.27403 -15.78680 -15.42655 -15.24623 -14.60910 -13.83085 -13.67379 -13.56271 -13.51566 -13.26188 -12.91071 -12.78262 -12.44480 -12.31649 -12.22392 -12.13753 -12.02354 -11.58490 -11.33795 -11.01555 -10.90119 -10.84673 -10.72375 -10.34596 -9.99462 -9.86330 -9.55805 -9.36927 -8.86640 -8.42277 -7.97931 -6.05011 -4.12379 -0.29586 2.46046 2.90539 3.22592 3.28014 3.34836 3.37855 3.56044 3.75523 4.29847 4.39985 4.46265 4.47649 4.72884 4.73790 5.15470 5.24967 5.30756 5.34193 5.39780 5.59436 5.61219 5.76255 6.07052 6.29396 6.34503 6.43629 6.61151 6.75450 6.89641 7.12249 7.28894 7.65575 7.85347 7.93463 8.03834 8.32851 8.51855 8.91130 9.52765 11.00574 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036753 B = 0.003364 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.668715 B = 8321.722849 C = 8604.739253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.421 3.579 3 O -0.941 6.941 4 O -0.939 6.939 5 C -0.591 4.591 6 C -0.134 4.134 7 C 0.516 3.484 8 O -0.550 6.550 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.137 4.137 12 C -0.113 4.113 13 C 0.039 3.961 14 H 0.029 0.971 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.116 3.884 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.097 11.146 -9.905 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.604 3.396 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.720 4.720 6 C -0.175 4.175 7 C 0.302 3.698 8 O -0.429 6.429 9 N -0.332 5.332 10 C -0.018 4.018 11 C -0.175 4.175 12 C -0.151 4.151 13 C 0.020 3.980 14 H 0.048 0.952 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.004 4.004 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.873 11.131 -10.232 18.623 hybrid contribution -0.182 -0.736 1.443 1.630 sum -11.056 10.395 -8.789 17.536 Atomic orbital electron populations 1.30247 1.26787 1.11748 1.11677 1.07810 0.78374 0.75779 0.77681 1.93599 1.79039 1.34583 1.86595 1.93611 1.78966 1.66915 1.54099 1.30117 1.04342 1.15096 1.22489 1.21395 0.92944 1.04220 0.98945 1.20077 0.82880 0.79166 0.87637 1.90653 1.45256 1.51971 1.55011 1.48309 1.04757 1.60468 1.19716 1.21742 0.88736 0.98170 0.93175 1.21945 0.97908 0.96809 1.00833 1.21636 1.01118 1.00649 0.91679 1.18976 0.91411 0.91351 0.96241 0.95241 1.21065 1.27834 1.14571 0.91912 0.92475 1.24941 0.96023 0.96371 0.96487 1.69872 1.33384 1.23204 1.26249 0.86566 0.77892 0.79222 0.84150 1.20666 1.21235 1.19879 1.22029 1.00555 0.96415 0.81444 0.85266 0.85336 0.85199 0.84189 0.84305 0.87349 0.87529 0.91004 0.91556 0.92190 0.92265 0.94505 0.88580 0.92932 0.92534 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.94 10.62 101.05 1.07 -1.87 16 2 S 2.42 19.28 5.36 -107.50 -0.58 18.70 16 3 O -0.94 -10.66 18.10 -57.83 -1.05 -11.71 16 4 O -0.94 -11.01 18.10 -57.83 -1.05 -12.05 16 5 C -0.59 -5.34 5.09 37.16 0.19 -5.15 16 6 C -0.13 -1.60 4.05 -27.88 -0.11 -1.71 16 7 C 0.52 8.74 7.70 -10.98 -0.08 8.65 16 8 O -0.55 -10.98 15.39 5.56 0.09 -10.89 16 9 N -0.60 -10.75 2.98 -173.05 -0.52 -11.26 16 10 C 0.10 1.57 6.31 -3.93 -0.02 1.55 16 11 C -0.14 -2.37 6.06 -26.83 -0.16 -2.54 16 12 C -0.11 -2.48 4.97 -26.69 -0.13 -2.61 16 13 C 0.04 0.95 2.25 -91.67 -0.21 0.74 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.52 -13.78 8.56 -34.44 -0.29 -14.08 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 19 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.12 2.46 5.66 -3.74 -0.02 2.44 16 24 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.14 1.17 8.10 -51.92 -0.42 0.75 16 28 H 0.14 1.09 8.10 -51.93 -0.42 0.67 16 29 H 0.11 1.16 7.68 -51.93 -0.40 0.76 16 30 H 0.11 1.05 7.95 -51.93 -0.41 0.64 16 31 H 0.07 0.84 5.93 -51.93 -0.31 0.54 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 2.41 6.05 -51.93 -0.31 2.09 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.80 7.01 -51.93 -0.36 1.43 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -35.62 328.85 -8.39 -44.02 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.99 Total: -0.62 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 0.13 Total: -12.95 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.11 Total: -35.34 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -2.01 Total: -34.65 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 19.28 SS G_CDS: -0.58 Total: 18.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.62 -8.39 -44.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701206037.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.628 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds