Wall clock time and date at job start Tue Mar 31 2020 02:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42097 * 108.57971 * 2 1 4 4 O 1.42099 * 108.57976 * 228.96626 * 2 1 3 5 5 C 1.81408 * 101.91685 * 114.48126 * 2 1 3 6 6 C 1.53000 * 109.46799 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 5 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58544 * 10 9 7 12 12 C 1.53035 * 109.38268 * 305.59133 * 11 10 9 13 13 C 1.53043 * 109.53810 * 61.23936 * 12 11 10 14 14 H 1.09005 * 109.49595 * 58.58664 * 13 12 11 15 15 C 1.50705 * 109.52169 * 178.66288 * 13 12 11 16 16 H 1.08006 * 119.99596 * 119.85554 * 15 13 12 17 17 C 1.37871 * 120.00476 * 299.85549 * 15 13 12 18 18 N 1.31522 * 119.99903 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00389 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47291 * 89.99719 * 19 17 15 21 21 H 1.48496 * 109.47506 * 210.00164 * 19 17 15 22 22 H 1.48500 * 109.46810 * 329.99917 * 19 17 15 23 23 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 24 24 H 1.08995 * 109.47346 * 305.51790 * 1 2 3 25 25 H 1.09006 * 109.47053 * 65.51572 * 1 2 3 26 26 H 1.08998 * 109.47551 * 185.51454 * 1 2 3 27 27 H 1.09001 * 109.46823 * 60.00081 * 5 2 1 28 28 H 1.08992 * 109.47429 * 300.00117 * 5 2 1 29 29 H 1.09002 * 109.47398 * 300.00340 * 6 5 2 30 30 H 1.09001 * 109.47194 * 60.00520 * 6 5 2 31 31 H 1.09000 * 109.59185 * 353.42700 * 10 9 7 32 32 H 1.09004 * 109.58365 * 113.84987 * 10 9 7 33 33 H 1.09003 * 109.56176 * 185.55325 * 11 10 9 34 34 H 1.09000 * 109.36023 * 65.50261 * 11 10 9 35 35 H 1.09007 * 109.46249 * 301.21815 * 12 11 10 36 36 H 1.09006 * 109.45861 * 181.25777 * 12 11 10 37 37 H 0.96996 * 120.00298 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.58607 * 246.15487 * 23 9 7 39 39 H 1.09000 * 109.58547 * 6.57598 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8843 -1.0160 5 6 2.1886 -0.7355 1.6154 6 6 3.7054 -0.8194 1.7981 7 6 4.0166 -1.4311 3.1398 8 8 3.1141 -1.7663 3.8774 9 7 5.2978 -1.6045 3.5205 10 6 6.4017 -1.2081 2.6358 11 6 7.3397 -2.3989 2.4461 12 6 7.7859 -2.9170 3.8152 13 6 6.5636 -3.3842 4.6089 14 1 6.0463 -4.1664 4.0533 15 6 7.0067 -3.9246 5.9441 16 1 6.6496 -3.4696 6.8563 17 6 7.8678 -4.9999 6.0014 18 7 8.3022 -5.5543 4.8906 19 14 8.4163 -5.6702 7.6564 20 1 7.4687 -6.7227 8.1029 21 1 9.7770 -6.2510 7.5289 22 1 8.4394 -4.5697 8.6531 23 6 5.6170 -2.1999 4.8252 24 1 -0.3634 0.5970 0.8364 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3634 -1.0229 0.0988 27 1 1.7609 -1.7368 1.6666 28 1 1.7609 -0.1170 2.4043 29 1 4.1327 -1.4383 1.0091 30 1 4.1335 0.1817 1.7467 31 1 6.0030 -0.9011 1.6689 32 1 6.9517 -0.3814 3.0857 33 1 8.2128 -2.0880 1.8724 34 1 6.8151 -3.1904 1.9109 35 1 8.2887 -2.1177 4.3598 36 1 8.4728 -3.7527 3.6810 37 1 8.9083 -6.3105 4.9308 38 1 6.1015 -1.4559 5.4577 39 1 4.7006 -2.5472 5.3024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701206037.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:07 Heat of formation + Delta-G solvation = -142.317170 kcal Electronic energy + Delta-G solvation = -21439.964463 eV Core-core repulsion = 18087.559502 eV Total energy + Delta-G solvation = -3352.404961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.16163 -38.48638 -37.95373 -37.01658 -35.41259 -34.20786 -33.01239 -31.91939 -30.34093 -27.46410 -26.69406 -24.93980 -23.32406 -21.48786 -19.83963 -19.74475 -18.72937 -18.14796 -17.30789 -17.21742 -16.85840 -16.58000 -16.47167 -16.33116 -15.14376 -14.99915 -14.87621 -14.49703 -14.31426 -13.91731 -13.87771 -13.67477 -13.60615 -13.41202 -13.08164 -12.98893 -12.88855 -12.69602 -12.58170 -12.44422 -12.00161 -11.94311 -11.85276 -11.61620 -11.53676 -11.28706 -10.89727 -10.70050 -10.44127 -9.51832 -8.11672 -6.27028 -0.90252 1.40529 1.41532 1.51463 1.59815 1.89019 2.06876 2.42858 2.76744 3.15003 3.17526 3.41528 3.65580 3.86586 4.06817 4.16804 4.23816 4.28576 4.33834 4.39888 4.53222 4.59375 4.62535 4.81017 4.85560 4.92108 4.97684 5.03739 5.11124 5.27375 5.46715 5.54446 5.60347 5.92032 6.12343 6.33214 6.52591 6.82664 7.16038 7.41314 8.92060 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036753 B = 0.003364 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.668715 B = 8321.722849 C = 8604.739253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.443 3.557 3 O -0.976 6.976 4 O -0.980 6.980 5 C -0.597 4.597 6 C -0.138 4.138 7 C 0.509 3.491 8 O -0.587 6.587 9 N -0.609 5.609 10 C 0.103 3.897 11 C -0.130 4.130 12 C -0.107 4.107 13 C 0.040 3.960 14 H -0.013 1.013 15 C -0.538 4.538 16 H 0.053 0.947 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 0.956 3.044 20 H -0.279 1.279 21 H -0.281 1.281 22 H -0.267 1.267 23 C 0.129 3.871 24 H 0.152 0.848 25 H 0.143 0.857 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 12.775 -10.743 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.629 3.371 3 O -0.973 6.973 4 O -0.977 6.977 5 C -0.725 4.725 6 C -0.178 4.178 7 C 0.298 3.702 8 O -0.468 6.468 9 N -0.340 5.340 10 C -0.018 4.018 11 C -0.168 4.168 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.005 0.995 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.183 4.183 18 N -0.552 5.552 19 Si 0.781 3.219 20 H -0.205 1.205 21 H -0.206 1.206 22 H -0.191 1.191 23 C 0.007 3.993 24 H 0.170 0.830 25 H 0.161 0.839 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.169 0.831 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.783 12.775 -11.084 20.613 hybrid contribution 0.021 -1.269 1.708 2.128 sum -11.762 11.506 -9.376 18.938 Atomic orbital electron populations 1.30081 1.21544 1.13810 1.13566 1.07001 0.79998 0.74022 0.76104 1.93550 1.81090 1.35990 1.86716 1.93558 1.81130 1.67690 1.55352 1.30205 1.02524 1.15906 1.23883 1.21528 0.95435 1.05252 0.95582 1.20990 0.81863 0.78302 0.89065 1.90627 1.46204 1.53434 1.56578 1.48387 1.06282 1.60434 1.18910 1.21980 0.87699 0.97310 0.94826 1.21862 0.99600 0.97480 0.97903 1.21432 0.99269 0.99487 0.94289 1.18884 0.92640 0.91408 0.95030 0.99521 1.21446 1.28071 1.15205 0.92967 0.92885 1.25701 0.96112 0.96667 0.99813 1.70012 1.33736 1.23460 1.28031 0.85593 0.77489 0.78573 0.80219 1.20540 1.20622 1.19125 1.21560 0.98604 0.95558 0.83608 0.82989 0.83896 0.83273 0.83819 0.83145 0.86045 0.85007 0.86842 0.89603 0.89117 0.93619 0.94340 0.91997 0.92936 0.91963 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.27 10.62 113.37 1.20 -2.07 16 2 S 2.44 33.45 5.36 -56.49 -0.30 33.15 16 3 O -0.98 -20.17 18.10 -127.37 -2.30 -22.48 16 4 O -0.98 -21.50 18.10 -127.37 -2.31 -23.80 16 5 C -0.60 -9.56 5.09 71.98 0.37 -9.19 16 6 C -0.14 -2.98 4.05 29.85 0.12 -2.86 16 7 C 0.51 16.83 7.70 87.66 0.67 17.51 16 8 O -0.59 -23.59 15.39 -3.02 -0.05 -23.64 16 9 N -0.61 -21.40 2.98 -819.81 -2.44 -23.85 16 10 C 0.10 2.85 6.31 86.22 0.54 3.40 16 11 C -0.13 -4.38 6.06 30.53 0.19 -4.20 16 12 C -0.11 -4.77 4.97 30.62 0.15 -4.62 16 13 C 0.04 1.99 2.25 -11.48 -0.03 1.96 16 14 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 15 C -0.54 -29.78 8.56 25.60 0.22 -29.56 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C 0.02 0.89 5.30 84.65 0.45 1.34 16 18 N -0.91 -52.32 11.32 21.45 0.24 -52.08 16 19 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 C 0.13 5.61 5.66 86.35 0.49 6.10 16 24 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.14 2.18 8.10 -2.39 -0.02 2.16 16 28 H 0.15 2.03 8.10 -2.39 -0.02 2.01 16 29 H 0.12 2.32 7.68 -2.39 -0.02 2.30 16 30 H 0.13 2.18 7.95 -2.39 -0.02 2.16 16 31 H 0.11 2.23 5.93 -2.39 -0.01 2.22 16 32 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.06 3.20 6.05 -2.38 -0.01 3.19 16 37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.06 2.65 7.01 -2.39 -0.02 2.63 16 Total: -1.00 -80.69 328.85 0.28 -80.41 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.03 Total: 8.90 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.38 Total: -22.19 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.20 Total: -75.93 kcal Atomic # 8 Polarization: -65.26 SS G_CDS: -4.66 Total: -69.91 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 33.45 SS G_CDS: -0.30 Total: 33.15 kcal Total: -80.69 0.28 -80.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701206037.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.903 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds